2019-07-14T19:53:46 Created temporary directory: /tmp/pip-ephem-wheel-cache-shkr5ly5
2019-07-14T19:53:46 Created temporary directory: /tmp/pip-req-tracker-65k4rv9o
2019-07-14T19:53:46 Created requirements tracker '/tmp/pip-req-tracker-65k4rv9o'
2019-07-14T19:53:46 Created temporary directory: /tmp/pip-wheel-keke3twd
2019-07-14T19:53:46 Collecting motifscan==1.1
2019-07-14T19:53:46   1 location(s) to search for versions of motifscan:
2019-07-14T19:53:46   * https://pypi.org/simple/motifscan/
2019-07-14T19:53:46   Getting page https://pypi.org/simple/motifscan/
2019-07-14T19:53:46   Analyzing links from page https://pypi.org/simple/motifscan/
2019-07-14T19:53:46     Found link https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 (from https://pypi.org/simple/motifscan/), version: 1.1
2019-07-14T19:53:46     Found link https://files.pythonhosted.org/packages/12/fc/0974ba6cbffbbd9d6d4fd6e69f433d3a22c9936d2f85ff01f8d7e573bed9/motifscan-1.1.2.tar.gz#sha256=7ba31fed062fc1d228ac9178383dc12711bf4f65d98ade383eccf23a4abe0099 (from https://pypi.org/simple/motifscan/), version: 1.1.2
2019-07-14T19:53:46   Using version 1.1 (newest of versions: 1.1)
2019-07-14T19:53:46   Created temporary directory: /tmp/pip-unpack-ttymgqte
2019-07-14T19:53:46   Downloading https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz (11.5MB)
2019-07-14T19:53:46   Downloading from URL https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 (from https://pypi.org/simple/motifscan/)
2019-07-14T19:53:51   Added motifscan==1.1 from https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 to build tracker '/tmp/pip-req-tracker-65k4rv9o'
2019-07-14T19:53:51     Running setup.py (path:/tmp/pip-wheel-keke3twd/motifscan/setup.py) egg_info for package motifscan
2019-07-14T19:53:51     Running command python setup.py egg_info
2019-07-14T19:53:53     running egg_info
2019-07-14T19:53:53     creating pip-egg-info/motifscan.egg-info
2019-07-14T19:53:53     writing pip-egg-info/motifscan.egg-info/PKG-INFO
2019-07-14T19:53:53     writing dependency_links to pip-egg-info/motifscan.egg-info/dependency_links.txt
2019-07-14T19:53:53     writing requirements to pip-egg-info/motifscan.egg-info/requires.txt
2019-07-14T19:53:53     writing top-level names to pip-egg-info/motifscan.egg-info/top_level.txt
2019-07-14T19:53:53     writing manifest file 'pip-egg-info/motifscan.egg-info/SOURCES.txt'
2019-07-14T19:53:53     reading manifest file 'pip-egg-info/motifscan.egg-info/SOURCES.txt'
2019-07-14T19:53:53     reading manifest template 'MANIFEST.in'
2019-07-14T19:53:53     writing manifest file 'pip-egg-info/motifscan.egg-info/SOURCES.txt'
2019-07-14T19:53:54   Source in /tmp/pip-wheel-keke3twd/motifscan has version 1.1, which satisfies requirement motifscan==1.1 from https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284
2019-07-14T19:53:54   Removed motifscan==1.1 from https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 from build tracker '/tmp/pip-req-tracker-65k4rv9o'
2019-07-14T19:53:54 Building wheels for collected packages: motifscan
2019-07-14T19:53:54   Created temporary directory: /tmp/pip-wheel-9fu9ydak
2019-07-14T19:53:54   Building wheel for motifscan (setup.py): started
2019-07-14T19:53:54   Destination directory: /tmp/pip-wheel-9fu9ydak
2019-07-14T19:53:54   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-keke3twd/motifscan/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9fu9ydak
2019-07-14T19:53:55   running bdist_wheel
2019-07-14T19:53:55   running build
2019-07-14T19:53:55   running build_py
2019-07-14T19:53:55   creating build
2019-07-14T19:53:55   creating build/lib.linux-armv7l-3.7
2019-07-14T19:53:55   creating build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/_version.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/enrich.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/core.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/plot.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/stats.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/workflow.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/utils.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   copying motifscan/__init__.py -> build/lib.linux-armv7l-3.7/motifscan
2019-07-14T19:53:55   creating build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/genomeio.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/peakio.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/outputwriter.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/motifio.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/constants.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/__init__.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   copying motifscan/io/geneio.py -> build/lib.linux-armv7l-3.7/motifscan/io
2019-07-14T19:53:55   creating build/lib.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:55   copying motifscan/lib/genome.py -> build/lib.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:55   copying motifscan/lib/peak.py -> build/lib.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:55   copying motifscan/lib/matrix.py -> build/lib.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:55   copying motifscan/lib/motif.py -> build/lib.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:55   copying motifscan/lib/__init__.py -> build/lib.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:55   running build_ext
2019-07-14T19:53:56   building 'motifscan.score_c' extension
2019-07-14T19:53:56   creating build/temp.linux-armv7l-3.7
2019-07-14T19:53:56   creating build/temp.linux-armv7l-3.7/motifscan
2019-07-14T19:53:56   creating build/temp.linux-armv7l-3.7/motifscan/lib
2019-07-14T19:53:56   g++ -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c motifscan/lib/score.cpp -o build/temp.linux-armv7l-3.7/motifscan/lib/score.o
2019-07-14T19:53:57   motifscan/lib/score.cpp: In function ‘MAT* expandMAT(double*, size_t)’:
2019-07-14T19:53:57   motifscan/lib/score.cpp:83:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2019-07-14T19:53:57        for(i=0;i<s;i++)
2019-07-14T19:53:57                ~^~
2019-07-14T19:53:57   motifscan/lib/score.cpp: In function ‘double* sliding_score(double*, int, double*, int)’:
2019-07-14T19:53:57   motifscan/lib/score.cpp:184:12: warning: unused variable ‘sum’ [-Wunused-variable]
2019-07-14T19:53:57        double sum = 0;
2019-07-14T19:53:57               ^~~
2019-07-14T19:53:57   motifscan/lib/score.cpp: In function ‘MOTIF_RES* motif_scan_core(MAT*, MAT*, double*, double, double)’:
2019-07-14T19:53:57   motifscan/lib/score.cpp:337:19: warning: left operand of comma operator has no effect [-Wunused-value]
2019-07-14T19:53:57        for(i=0,j=0; i<tarnum,j<ratio_len; j++)
2019-07-14T19:53:57                     ~^~~~~~~
2019-07-14T19:53:58   arm-linux-gnueabihf-g++ -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/motifscan/lib/score.o -o build/lib.linux-armv7l-3.7/motifscan/score_c.cpython-37m-arm-linux-gnueabihf.so --shared
2019-07-14T19:53:58   running build_scripts
2019-07-14T19:53:58   creating build/scripts-3.7
2019-07-14T19:53:58   copying and adjusting bin/motifscan -> build/scripts-3.7
2019-07-14T19:53:58   copying and adjusting bin/motifcompile -> build/scripts-3.7
2019-07-14T19:53:58   copying and adjusting bin/genomecompile -> build/scripts-3.7
2019-07-14T19:53:58   changing mode of build/scripts-3.7/motifscan from 644 to 755
2019-07-14T19:53:58   changing mode of build/scripts-3.7/motifcompile from 644 to 755
2019-07-14T19:53:58   changing mode of build/scripts-3.7/genomecompile from 644 to 755
2019-07-14T19:53:58   installing to build/bdist.linux-armv7l/wheel
2019-07-14T19:53:58   running install
2019-07-14T19:53:58   running install_lib
2019-07-14T19:53:58   creating build/bdist.linux-armv7l
2019-07-14T19:53:58   creating build/bdist.linux-armv7l/wheel
2019-07-14T19:53:58   creating build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/_version.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   creating build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/genomeio.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/peakio.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/outputwriter.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/motifio.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/constants.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/io/geneio.py -> build/bdist.linux-armv7l/wheel/motifscan/io
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/enrich.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   creating build/bdist.linux-armv7l/wheel/motifscan/lib
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/lib/genome.py -> build/bdist.linux-armv7l/wheel/motifscan/lib
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/lib/peak.py -> build/bdist.linux-armv7l/wheel/motifscan/lib
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/lib/matrix.py -> build/bdist.linux-armv7l/wheel/motifscan/lib
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/lib/motif.py -> build/bdist.linux-armv7l/wheel/motifscan/lib
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/lib/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan/lib
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/core.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/plot.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/stats.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/workflow.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/utils.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/score_c.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   copying build/lib.linux-armv7l-3.7/motifscan/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan
2019-07-14T19:53:58   running install_egg_info
2019-07-14T19:53:58   running egg_info
2019-07-14T19:53:58   writing motifscan.egg-info/PKG-INFO
2019-07-14T19:53:58   writing dependency_links to motifscan.egg-info/dependency_links.txt
2019-07-14T19:53:58   writing requirements to motifscan.egg-info/requires.txt
2019-07-14T19:53:58   writing top-level names to motifscan.egg-info/top_level.txt
2019-07-14T19:53:59   reading manifest file 'motifscan.egg-info/SOURCES.txt'
2019-07-14T19:53:59   reading manifest template 'MANIFEST.in'
2019-07-14T19:53:59   writing manifest file 'motifscan.egg-info/SOURCES.txt'
2019-07-14T19:53:59   Copying motifscan.egg-info to build/bdist.linux-armv7l/wheel/motifscan-1.1-py3.7.egg-info
2019-07-14T19:53:59   running install_scripts
2019-07-14T19:53:59   creating build/bdist.linux-armv7l/wheel/motifscan-1.1.data
2019-07-14T19:53:59   creating build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts
2019-07-14T19:53:59   copying build/scripts-3.7/motifscan -> build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts
2019-07-14T19:53:59   copying build/scripts-3.7/motifcompile -> build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts
2019-07-14T19:53:59   copying build/scripts-3.7/genomecompile -> build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts
2019-07-14T19:53:59   changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts/motifscan to 755
2019-07-14T19:53:59   changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts/motifcompile to 755
2019-07-14T19:53:59   changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts/genomecompile to 755
2019-07-14T19:53:59   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2019-07-14T19:53:59   creating build/bdist.linux-armv7l/wheel/motifscan-1.1.dist-info/WHEEL
2019-07-14T19:53:59   creating '/tmp/pip-wheel-9fu9ydak/motifscan-1.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-14T19:53:59   adding 'motifscan/__init__.py'
2019-07-14T19:53:59   adding 'motifscan/_version.py'
2019-07-14T19:53:59   adding 'motifscan/core.py'
2019-07-14T19:53:59   adding 'motifscan/enrich.py'
2019-07-14T19:53:59   adding 'motifscan/plot.py'
2019-07-14T19:53:59   adding 'motifscan/score_c.cpython-37m-arm-linux-gnueabihf.so'
2019-07-14T19:53:59   adding 'motifscan/stats.py'
2019-07-14T19:53:59   adding 'motifscan/utils.py'
2019-07-14T19:53:59   adding 'motifscan/workflow.py'
2019-07-14T19:53:59   adding 'motifscan/io/__init__.py'
2019-07-14T19:53:59   adding 'motifscan/io/constants.py'
2019-07-14T19:53:59   adding 'motifscan/io/geneio.py'
2019-07-14T19:53:59   adding 'motifscan/io/genomeio.py'
2019-07-14T19:53:59   adding 'motifscan/io/motifio.py'
2019-07-14T19:53:59   adding 'motifscan/io/outputwriter.py'
2019-07-14T19:53:59   adding 'motifscan/io/peakio.py'
2019-07-14T19:53:59   adding 'motifscan/lib/__init__.py'
2019-07-14T19:53:59   adding 'motifscan/lib/genome.py'
2019-07-14T19:53:59   adding 'motifscan/lib/matrix.py'
2019-07-14T19:53:59   adding 'motifscan/lib/motif.py'
2019-07-14T19:53:59   adding 'motifscan/lib/peak.py'
2019-07-14T19:53:59   adding 'motifscan-1.1.data/scripts/genomecompile'
2019-07-14T19:53:59   adding 'motifscan-1.1.data/scripts/motifcompile'
2019-07-14T19:53:59   adding 'motifscan-1.1.data/scripts/motifscan'
2019-07-14T19:53:59   adding 'motifscan-1.1.dist-info/LICENSE'
2019-07-14T19:53:59   adding 'motifscan-1.1.dist-info/METADATA'
2019-07-14T19:53:59   adding 'motifscan-1.1.dist-info/WHEEL'
2019-07-14T19:53:59   adding 'motifscan-1.1.dist-info/top_level.txt'
2019-07-14T19:53:59   adding 'motifscan-1.1.dist-info/RECORD'
2019-07-14T19:53:59   removing build/bdist.linux-armv7l/wheel
2019-07-14T19:53:59   Building wheel for motifscan (setup.py): finished with status 'done'
2019-07-14T19:53:59   Stored in directory: /tmp/tmpznrifllk
2019-07-14T19:53:59 Successfully built motifscan
2019-07-14T19:53:59 Cleaning up...
2019-07-14T19:53:59   Removing source in /tmp/pip-wheel-keke3twd/motifscan
2019-07-14T19:53:59 Removed build tracker '/tmp/pip-req-tracker-65k4rv9o'