2019-07-14T20:01:19 Created temporary directory: /tmp/pip-ephem-wheel-cache-p90lvtfy 2019-07-14T20:01:19 Created temporary directory: /tmp/pip-req-tracker-yeb758ld 2019-07-14T20:01:19 Created requirements tracker '/tmp/pip-req-tracker-yeb758ld' 2019-07-14T20:01:19 Created temporary directory: /tmp/pip-wheel-qhl7rrca 2019-07-14T20:01:19 Collecting phydms==2.1.4 2019-07-14T20:01:19 1 location(s) to search for versions of phydms: 2019-07-14T20:01:19 * https://pypi.org/simple/phydms/ 2019-07-14T20:01:19 Getting page https://pypi.org/simple/phydms/ 2019-07-14T20:01:20 Analyzing links from page https://pypi.org/simple/phydms/ 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/11/8b/924f010cb273c3d58b5ebca589d32044b7d38f2355a3e4018596a926b5a3/phydms-1.0.0.tar.gz#sha256=28f8fe31062699196a4dbacf76d3ff511730d04cccd0fe7c337b6b4c14dfa023 (from https://pypi.org/simple/phydms/), version: 1.0.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/6f/19/f8d04c628f5d06cb911a58cfa6b53988298500bdaeea689695a1d1801595/phydms-1.0.1.tar.gz#sha256=4a5a2ccb4f4d64db9a8ff6211653a2c27e6594995dacafda80a2f09464dc3924 (from https://pypi.org/simple/phydms/), version: 1.0.1 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/7a/9e/d72b19e0423c6347f7d2a3ee341e6c7d95762391a5f4727c71c55cd36315/phydms-1.0.2.tar.gz#sha256=0a9f45574b40c4889273d21e15d1f409a81b53e7b92f46233dde09f820eb36d9 (from https://pypi.org/simple/phydms/), version: 1.0.2 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/97/04/aff84721a0b84aaf193e5cd4e03afc481959566ed1d89903d6157f682bbf/phydms-1.1.0.tar.gz#sha256=ee376ab454e30059e87c6045a2b355fabd4870be4007082a55c82bae21e5fe7b (from https://pypi.org/simple/phydms/), version: 1.1.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/b8/a4/9a766d44bdddb39d4b27970590671065ccaad8bf6f2c103d4cba4860e6e6/phydms-1.2.0.tar.gz#sha256=594107afd6b2cc29701093c4b3a88da9901e9aa316222f61d9e325fa695d44ce (from https://pypi.org/simple/phydms/), version: 1.2.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/89/8d/0fda131f5a9c10f1b0c5f9a07d45aa5a488c6504b2991acf6bd43cee0087/phydms-1.2.1.tar.gz#sha256=c3487b938aa93d21b5b478e6e9124efb375b730c960848cf3f0d7725edfaa352 (from https://pypi.org/simple/phydms/), version: 1.2.1 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/cf/1d/bcc6f877c3129cd15943bcdaaac04707799d698827a2a171c30c94854d26/phydms-1.2.2.tar.gz#sha256=56117e112039a4cb778b76572d46780ba96cb5b9eaec05c4aad5bda8ec4f4883 (from https://pypi.org/simple/phydms/), version: 1.2.2 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/af/f0/7be30b868a70e2d56f14e956dc89fa29fb6423ffc40cc5ea2a4b7e5a1da3/phydms-1.2.3.tar.gz#sha256=a4d8bba85902503840486a2c4a54fd15231f4367fde00a96e32f4739c17908a5 (from https://pypi.org/simple/phydms/), version: 1.2.3 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/bc/6a/8359a5c0574156f52584ca5af73006ca00ad22ada8e0a5043045ad2351a8/phydms-1.2.4.tar.gz#sha256=15de1268b9ccff63b8d5dce1af42fce0b74d785ef55c740f9f9884cfcb00568e (from https://pypi.org/simple/phydms/), version: 1.2.4 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/95/94/83ad1639e1b4f5443f4f87a02808f1baa343443b3bc6bd56d1dfd62101bd/phydms-1.2.5.tar.gz#sha256=490d6d14bf61a156815f0301e010d972d4c6661d8dfc0ba88baae1f7a752cc49 (from https://pypi.org/simple/phydms/), version: 1.2.5 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/95/4a/69ec601ce4654d6c91c614e12122a3e1ba1b7a02275e38c0aaa15246cb64/phydms-1.3.0.tar.gz#sha256=06ed1fad6a3b0c1ad9be57ddb785b0ed570fda7fd22e669de49d6a1a1b28eb00 (from https://pypi.org/simple/phydms/), version: 1.3.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/c9/26/1663b6f3005d5e2c280ebaa2bca84251710ea7eb81a63ce2ef6d753577ae/phydms-2.0.0.tar.gz#sha256=1db0c03642c75eede6cdbf64a102c45c3a5ab04999e2e75d049a3f97e2a7b0fa (from https://pypi.org/simple/phydms/), version: 2.0.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/3d/a6/7f55eca9d765e342a1726e6ec8e2ad1595b3d1d80eeb83bba8d6c7774db9/phydms-2.0.1.tar.gz#sha256=fea9fef5140294461020f830dbf1902d06291fc9d7278b4b865fc8e4c3942dba (from https://pypi.org/simple/phydms/), version: 2.0.1 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/21/ba/99e6c7d184abf29f1948f423c8d4f3131b547570e066fec231719fbb1891/phydms-2.0.2.tar.gz#sha256=d47a40f8c600c2936fbf2e78727fbf4e3e528b9e64b978930cc597159d1d9291 (from https://pypi.org/simple/phydms/), version: 2.0.2 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/a8/8e/91ee2e972a9837b0eb948696887c690c9dba13fc51b7cfddd755a69a9ebe/phydms-2.0.3.tar.gz#sha256=3c7e37c6c8ee6c8ecd0d619718c7c809e61c83b23465185e1d7e860c646c74e5 (from https://pypi.org/simple/phydms/), version: 2.0.3 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/39/9a/79c9350297cd356d5b85f21ae368af4c2f6feb579e464a26b4f3033044e1/phydms-2.0.4.tar.gz#sha256=42051e72175f6093b44323a97bb3435d7fdcd407951cae237c22b12910c8b664 (from https://pypi.org/simple/phydms/), version: 2.0.4 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/5f/20/e6b2886824048f55f96c74b582635240fe379901fcc2ae9cc16d805e1e67/phydms-2.0.5.tar.gz#sha256=8c6c1d69ceef92ba113b49aed6bc62b9fd738cc1f1aa31772ee2d6456c8dafbf (from https://pypi.org/simple/phydms/), version: 2.0.5 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/99/34/b560ee996e5e8b6b264c817aed8677ce28ac81e4287c6c70c8c95cf21c93/phydms-2.1.0.tar.gz#sha256=79d456f886cfaf626ef99df9aabae72f5d113cffa6a23bc17aa1f011dfba283c (from https://pypi.org/simple/phydms/), version: 2.1.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/c5/a3/041d15a1abbf422ac6f1c91eb23ba0db1e50777dba5a64e6df7fa2140871/phydms-2.1.1.tar.gz#sha256=7cd0f452a963fde64cc808cee8d198fdef4a1d81b5379c5aad2bf47ca0c1c852 (from https://pypi.org/simple/phydms/), version: 2.1.1 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/64/71/bdc4e1435808360148cfb1e94a23cb90699d8d8b2b90591d0b2776ae12de/phydms-2.1.2.tar.gz#sha256=7e7c970a7a73e730d57611edf2061f89d2e4b7f89c7f70ec2dbd912d5df759ba (from https://pypi.org/simple/phydms/), version: 2.1.2 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/30/6b/f6a25dc2940fd2fe23489136fa1c5e6c013114f9f35423be6a0242b6b161/phydms-2.1.3.tar.gz#sha256=36ca87804ba5e580aa0d16ab1f55b15eea3af76afbe0c4938887e001b6424ece (from https://pypi.org/simple/phydms/), version: 2.1.3 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz#sha256=048fec8aae41f4cf18ccd9e8f0c0980f654290dd9ce01b37e4f1f950ea54c78b (from https://pypi.org/simple/phydms/), version: 2.1.4 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/f0/f7/3881d836491bb3c0b174925c731ea595ddab5ed78cfe09f1e5221477cb86/phydms-2.2.0.tar.gz#sha256=9094114c44bb944e816e5baaa71e11d106112f993ce31e6531e36f4d358ea1cb (from https://pypi.org/simple/phydms/), version: 2.2.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/4f/b5/e90d6505b94c2a0a383d9ef281247366ba7e6d40770107df276f511b1e8c/phydms-2.2.1.tar.gz#sha256=702749858c1811b824ad0cd026c8cbfbd80961511cdfc06d6605746edf269eb3 (from https://pypi.org/simple/phydms/), version: 2.2.1 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/7b/ec/541e7deb49c50b1d154c54e7446c27aa132f279ceb8dd7cef39aa5cfd5d8/phydms-2.2.2.tar.gz#sha256=c85ad79c851bbcbd9c6c8e5515e92138c539d5bab7861f0ae3ac82a036c5ff0c (from https://pypi.org/simple/phydms/), version: 2.2.2 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/4c/ff/cf382034d5ceef9c4a6e60fbe8db814239039cf3282dbf461c2b9120ea4d/phydms-2.3.0.tar.gz#sha256=9031830847e875f9bee68f233740bf7e634131737cc7f7d490da84760a149c73 (from https://pypi.org/simple/phydms/), version: 2.3.0 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/2a/fc/8487f272f7436859fd869c9e01ee742c0f41d369593baf9fb063625b08cc/phydms-2.3.1.tar.gz#sha256=163681770b1e97e9c8fdbbebebd3b3296fd046d5ee48058ea3929f6a4a7ea1bb (from https://pypi.org/simple/phydms/), version: 2.3.1 2019-07-14T20:01:20 Found link https://files.pythonhosted.org/packages/42/e3/9ce35b49c05d49740b734134e122735c46382c494a6edffa594389afe0bd/phydms-2.3.2.tar.gz#sha256=7ec6cdf59600907f967ff9e6a811425a1f1e955bd1f14c910108660e52947e75 (from https://pypi.org/simple/phydms/), version: 2.3.2 2019-07-14T20:01:20 Using version 2.1.4 (newest of versions: 2.1.4) 2019-07-14T20:01:20 Created temporary directory: /tmp/pip-unpack-oz76t2dd 2019-07-14T20:01:20 Downloading https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz (593kB) 2019-07-14T20:01:20 Downloading from URL https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz#sha256=048fec8aae41f4cf18ccd9e8f0c0980f654290dd9ce01b37e4f1f950ea54c78b (from https://pypi.org/simple/phydms/) 2019-07-14T20:01:20 Added phydms==2.1.4 from https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz#sha256=048fec8aae41f4cf18ccd9e8f0c0980f654290dd9ce01b37e4f1f950ea54c78b to build tracker '/tmp/pip-req-tracker-yeb758ld' 2019-07-14T20:01:20 Running setup.py (path:/tmp/pip-wheel-qhl7rrca/phydms/setup.py) egg_info for package phydms 2019-07-14T20:01:20 Running command python setup.py egg_info 2019-07-14T20:01:22 running egg_info 2019-07-14T20:01:22 creating pip-egg-info/phydms.egg-info 2019-07-14T20:01:22 writing pip-egg-info/phydms.egg-info/PKG-INFO 2019-07-14T20:01:22 writing dependency_links to pip-egg-info/phydms.egg-info/dependency_links.txt 2019-07-14T20:01:22 writing requirements to pip-egg-info/phydms.egg-info/requires.txt 2019-07-14T20:01:26 Compiling phydmslib/numutils.pyx because it depends on /usr/lib/python3/dist-packages/Cython/Includes/numpy/__init__.pxd. 2019-07-14T20:01:26 [1/1] Cythonizing phydmslib/numutils.pyx 2019-07-14T20:01:26 writing top-level names to pip-egg-info/phydms.egg-info/top_level.txt 2019-07-14T20:01:26 writing manifest file 'pip-egg-info/phydms.egg-info/SOURCES.txt' 2019-07-14T20:01:26 reading manifest file 'pip-egg-info/phydms.egg-info/SOURCES.txt' 2019-07-14T20:01:26 reading manifest template 'MANIFEST.in' 2019-07-14T20:01:26 /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-qhl7rrca/phydms/phydmslib/numutils.pyx 2019-07-14T20:01:26 tree = Parsing.p_module(s, pxd, full_module_name) 2019-07-14T20:01:26 warning: no files found matching '*.rst' under directory 'phydmslib' 2019-07-14T20:01:26 warning: no files found matching '*.h' under directory 'phydmslib' 2019-07-14T20:01:26 warning: no previously-included files matching '*.so' found anywhere in distribution 2019-07-14T20:01:26 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2019-07-14T20:01:26 warning: no previously-included files matching '.git*' found anywhere in distribution 2019-07-14T20:01:26 warning: no previously-included files matching '._*' found anywhere in distribution 2019-07-14T20:01:26 warning: no previously-included files matching 'slurm-*' found anywhere in distribution 2019-07-14T20:01:26 warning: no previously-included files matching '*.sbatch' found anywhere in distribution 2019-07-14T20:01:26 writing manifest file 'pip-egg-info/phydms.egg-info/SOURCES.txt' 2019-07-14T20:01:26 Source in /tmp/pip-wheel-qhl7rrca/phydms has version 2.1.4, which satisfies requirement phydms==2.1.4 from https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz#sha256=048fec8aae41f4cf18ccd9e8f0c0980f654290dd9ce01b37e4f1f950ea54c78b 2019-07-14T20:01:26 Removed phydms==2.1.4 from https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz#sha256=048fec8aae41f4cf18ccd9e8f0c0980f654290dd9ce01b37e4f1f950ea54c78b from build tracker '/tmp/pip-req-tracker-yeb758ld' 2019-07-14T20:01:26 Building wheels for collected packages: phydms 2019-07-14T20:01:26 Created temporary directory: /tmp/pip-wheel-b2pxyrx0 2019-07-14T20:01:26 Building wheel for phydms (setup.py): started 2019-07-14T20:01:26 Destination directory: /tmp/pip-wheel-b2pxyrx0 2019-07-14T20:01:26 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-qhl7rrca/phydms/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-b2pxyrx0 2019-07-14T20:01:28 running bdist_wheel 2019-07-14T20:01:29 running build 2019-07-14T20:01:29 running build_py 2019-07-14T20:01:30 creating build 2019-07-14T20:01:30 creating build/lib.linux-armv7l-3.7 2019-07-14T20:01:30 creating build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/models.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/file_io.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/__init__.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/parsearguments.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/_metadata.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/utils.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/constants.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/simulate.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/treelikelihood.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/weblogo.py -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 copying phydmslib/_weblogo_template.eps -> build/lib.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 running build_ext 2019-07-14T20:01:30 building 'phydmslib.numutils' extension 2019-07-14T20:01:30 creating build/temp.linux-armv7l-3.7 2019-07-14T20:01:30 creating build/temp.linux-armv7l-3.7/phydmslib 2019-07-14T20:01:30 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c phydmslib/numutils.c -o build/temp.linux-armv7l-3.7/phydmslib/numutils.o -Wno-unused-function 2019-07-14T20:01:30 In file included from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2019-07-14T20:01:30 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2019-07-14T20:01:30 from /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2019-07-14T20:01:30 from phydmslib/numutils.c:635: 2019-07-14T20:01:30 /home/piwheels/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2019-07-14T20:01:30 #warning "Using deprecated NumPy API, disable it with " \ 2019-07-14T20:01:30 ^~~~~~~ 2019-07-14T20:01:38 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/phydmslib/numutils.o -o build/lib.linux-armv7l-3.7/phydmslib/numutils.cpython-37m-arm-linux-gnueabihf.so 2019-07-14T20:01:38 running build_scripts 2019-07-14T20:01:38 creating build/scripts-3.7 2019-07-14T20:01:39 copying and adjusting scripts/phydms -> build/scripts-3.7 2019-07-14T20:01:39 copying and adjusting scripts/phydms_comprehensive -> build/scripts-3.7 2019-07-14T20:01:39 copying and adjusting scripts/phydms_prepalignment -> build/scripts-3.7 2019-07-14T20:01:39 copying and adjusting scripts/phydms_logoplot -> build/scripts-3.7 2019-07-14T20:01:39 copying and adjusting scripts/phydms_divpressure -> build/scripts-3.7 2019-07-14T20:01:39 changing mode of build/scripts-3.7/phydms from 644 to 755 2019-07-14T20:01:39 changing mode of build/scripts-3.7/phydms_comprehensive from 644 to 755 2019-07-14T20:01:39 changing mode of build/scripts-3.7/phydms_prepalignment from 644 to 755 2019-07-14T20:01:39 changing mode of build/scripts-3.7/phydms_logoplot from 644 to 755 2019-07-14T20:01:39 changing mode of build/scripts-3.7/phydms_divpressure from 644 to 755 2019-07-14T20:01:39 installing to build/bdist.linux-armv7l/wheel 2019-07-14T20:01:39 running install 2019-07-14T20:01:39 running install_lib 2019-07-14T20:01:39 creating build/bdist.linux-armv7l 2019-07-14T20:01:39 creating build/bdist.linux-armv7l/wheel 2019-07-14T20:01:39 creating build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/models.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/file_io.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/__init__.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/parsearguments.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/_metadata.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/numutils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/utils.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/constants.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/simulate.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/_weblogo_template.eps -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/treelikelihood.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 copying build/lib.linux-armv7l-3.7/phydmslib/weblogo.py -> build/bdist.linux-armv7l/wheel/phydmslib 2019-07-14T20:01:39 running install_egg_info 2019-07-14T20:01:39 running egg_info 2019-07-14T20:01:39 writing phydms.egg-info/PKG-INFO 2019-07-14T20:01:39 writing dependency_links to phydms.egg-info/dependency_links.txt 2019-07-14T20:01:39 writing requirements to phydms.egg-info/requires.txt 2019-07-14T20:01:39 writing top-level names to phydms.egg-info/top_level.txt 2019-07-14T20:01:39 reading manifest file 'phydms.egg-info/SOURCES.txt' 2019-07-14T20:01:39 reading manifest template 'MANIFEST.in' 2019-07-14T20:01:39 warning: no files found matching '*.rst' under directory 'phydmslib' 2019-07-14T20:01:39 warning: no files found matching '*.h' under directory 'phydmslib' 2019-07-14T20:01:39 warning: no previously-included files matching '*.so' found anywhere in distribution 2019-07-14T20:01:39 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2019-07-14T20:01:39 warning: no previously-included files matching '.git*' found anywhere in distribution 2019-07-14T20:01:39 warning: no previously-included files matching '._*' found anywhere in distribution 2019-07-14T20:01:39 warning: no previously-included files matching 'slurm-*' found anywhere in distribution 2019-07-14T20:01:39 warning: no previously-included files matching '*.sbatch' found anywhere in distribution 2019-07-14T20:01:39 writing manifest file 'phydms.egg-info/SOURCES.txt' 2019-07-14T20:01:39 Copying phydms.egg-info to build/bdist.linux-armv7l/wheel/phydms-2.1.4-py3.7.egg-info 2019-07-14T20:01:39 running install_scripts 2019-07-14T20:01:39 creating build/bdist.linux-armv7l/wheel/phydms-2.1.4.data 2019-07-14T20:01:39 creating build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts 2019-07-14T20:01:39 copying build/scripts-3.7/phydms_prepalignment -> build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts 2019-07-14T20:01:39 copying build/scripts-3.7/phydms_divpressure -> build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts 2019-07-14T20:01:39 copying build/scripts-3.7/phydms_comprehensive -> build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts 2019-07-14T20:01:39 copying build/scripts-3.7/phydms -> build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts 2019-07-14T20:01:39 copying build/scripts-3.7/phydms_logoplot -> build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts 2019-07-14T20:01:39 changing mode of build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts/phydms_prepalignment to 755 2019-07-14T20:01:39 changing mode of build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts/phydms_divpressure to 755 2019-07-14T20:01:39 changing mode of build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts/phydms_comprehensive to 755 2019-07-14T20:01:39 changing mode of build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts/phydms to 755 2019-07-14T20:01:39 changing mode of build/bdist.linux-armv7l/wheel/phydms-2.1.4.data/scripts/phydms_logoplot to 755 2019-07-14T20:01:39 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2019-07-14T20:01:39 creating build/bdist.linux-armv7l/wheel/phydms-2.1.4.dist-info/WHEEL 2019-07-14T20:01:39 creating '/tmp/pip-wheel-b2pxyrx0/phydms-2.1.4-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2019-07-14T20:01:39 adding 'phydms-2.1.4.data/scripts/phydms' 2019-07-14T20:01:39 adding 'phydms-2.1.4.data/scripts/phydms_comprehensive' 2019-07-14T20:01:39 adding 'phydms-2.1.4.data/scripts/phydms_divpressure' 2019-07-14T20:01:39 adding 'phydms-2.1.4.data/scripts/phydms_logoplot' 2019-07-14T20:01:39 adding 'phydms-2.1.4.data/scripts/phydms_prepalignment' 2019-07-14T20:01:39 adding 'phydmslib/__init__.py' 2019-07-14T20:01:39 adding 'phydmslib/_metadata.py' 2019-07-14T20:01:39 adding 'phydmslib/_weblogo_template.eps' 2019-07-14T20:01:39 adding 'phydmslib/constants.py' 2019-07-14T20:01:39 adding 'phydmslib/file_io.py' 2019-07-14T20:01:39 adding 'phydmslib/models.py' 2019-07-14T20:01:39 adding 'phydmslib/numutils.cpython-37m-arm-linux-gnueabihf.so' 2019-07-14T20:01:39 adding 'phydmslib/parsearguments.py' 2019-07-14T20:01:39 adding 'phydmslib/simulate.py' 2019-07-14T20:01:39 adding 'phydmslib/treelikelihood.py' 2019-07-14T20:01:39 adding 'phydmslib/utils.py' 2019-07-14T20:01:39 adding 'phydmslib/weblogo.py' 2019-07-14T20:01:39 adding 'phydms-2.1.4.dist-info/LICENSE.txt' 2019-07-14T20:01:39 adding 'phydms-2.1.4.dist-info/METADATA' 2019-07-14T20:01:39 adding 'phydms-2.1.4.dist-info/WHEEL' 2019-07-14T20:01:39 adding 'phydms-2.1.4.dist-info/top_level.txt' 2019-07-14T20:01:39 adding 'phydms-2.1.4.dist-info/RECORD' 2019-07-14T20:01:39 removing build/bdist.linux-armv7l/wheel 2019-07-14T20:01:39 Building wheel for phydms (setup.py): finished with status 'done' 2019-07-14T20:01:39 Stored in directory: /tmp/tmpdeic0_jb 2019-07-14T20:01:39 Successfully built phydms 2019-07-14T20:01:39 Cleaning up... 2019-07-14T20:01:39 Removing source in /tmp/pip-wheel-qhl7rrca/phydms 2019-07-14T20:01:39 Removed build tracker '/tmp/pip-req-tracker-yeb758ld'