2019-07-15T09:15:59 Created temporary directory: /tmp/pip-ephem-wheel-cache-burludqr
2019-07-15T09:15:59 Created temporary directory: /tmp/pip-req-tracker-xgnbp9tp
2019-07-15T09:15:59 Created requirements tracker '/tmp/pip-req-tracker-xgnbp9tp'
2019-07-15T09:15:59 Created temporary directory: /tmp/pip-wheel-rw_z4bcm
2019-07-15T09:15:59 Collecting pysmFISH==0.0.4
2019-07-15T09:15:59   1 location(s) to search for versions of pysmFISH:
2019-07-15T09:15:59   * https://pypi.org/simple/pysmfish/
2019-07-15T09:15:59   Getting page https://pypi.org/simple/pysmfish/
2019-07-15T09:15:59   Analyzing links from page https://pypi.org/simple/pysmfish/
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/5b/9b/d5953e46b7343c11207579436a79d8ad22f78dad758b0c2fa623672b03d6/pysmFISH-0-py3-none-any.whl#sha256=7a7d3429469472dd23e37f5371294657a60a7ff8282c3ca424b62e6350c6d958 (from https://pypi.org/simple/pysmfish/), version: 0
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/8d/0a/b88c84846d9680f84ffec4dd0ea955bed109ace2573136d49f1a36405632/pysmFISH-0.0.5-py3-none-any.whl#sha256=05dc65a3503b95b109ae85ee7be047bb4b2a644414de577f519df091ccb7bfdc (from https://pypi.org/simple/pysmfish/), version: 0.0.5
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/82/42/7becea4d3c37cf201d37812fb21ce0f22c2c20d34f393cf46131735a95d0/pysmFISH-0.0.5.tar.gz#sha256=b127e3af6c902cea714b115fbae64feb42af16c932eb07bd700e3853c00ee539 (from https://pypi.org/simple/pysmfish/), version: 0.0.5
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/49/fe/74743007d3b2a2ed3f6384fb1b3d1e7601724446fa3e117de4b1dd638550/pysmFISH-0.0.2.tar.gz#sha256=8d2ace10da4244f5a4b25927bc1f40c468246b97b8b18c2e7d96cf88faaf0fc4 (from https://pypi.org/simple/pysmfish/) (requires-python:>3.6), version: 0.0.2
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/6a/70/8173ab3ae0155625800a9864a314c8dece0963067c0ddc02f240c93adf30/pysmFISH-0.0.3.tar.gz#sha256=bc61c438fc2b7857034794dff11cac590d80f9b5a559aeec9af3b7aae7c5c490 (from https://pypi.org/simple/pysmfish/) (requires-python:>3.6), version: 0.0.3
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/d3/dc/78ba2ddde40f293df8177542e0eb78fc644019a4e4457caf52662dc7a51f/pysmFISH-0.0.4.tar.gz#sha256=f9b46848b13f0575a062bb890e8042b312c4f0bf7facb66cb69bba26f3732fd7 (from https://pypi.org/simple/pysmfish/) (requires-python:>3.6), version: 0.0.4
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/77/4f/a659309b256998047402694890cdcbea761514a5f6c75d121a604882339d/pysmFISH-0.1.0-py3-none-any.whl#sha256=c7f56cd781ea2db88fb9bcfe25e617f5333f00b8c47af9349b0c7556d927b586 (from https://pypi.org/simple/pysmfish/), version: 0.1.0
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/60/f5/a8722a63bfeb4ea4bbb2bd0eeb62c357718f79a52fbbb3bdd754104f797f/pysmFISH-0.1.0.tar.gz#sha256=339432bc5a66e17adad6bbf36c0b9b8ec77cb2bf9529eb19b286b186cb9fcee3 (from https://pypi.org/simple/pysmfish/), version: 0.1.0
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/5a/74/746f9411d69ebb052162bc5bfd9e26a28a1945c75f417de7dd529d71fb08/pysmFISH-0.1.1.tar.gz#sha256=af5415ab540bea64fcbf6f19342eb34f8e208b8330333f6772cc5f1e82e1662c (from https://pypi.org/simple/pysmfish/), version: 0.1.1
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/18/d0/5261a73f55931e1a57235b357b497bc500ea0511f7ce80e1532284f03032/pysmFISH-0.1.2.tar.gz#sha256=1c539cc2d3eefe829fe50f2b8940320fa6b70894ac21c1fa27f8d0ef79e5bfb5 (from https://pypi.org/simple/pysmfish/), version: 0.1.2
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/1d/a2/8c1605d056b738668fe44e5ca4ee3980153e636e08364b9dc24fa1b70c7a/pysmFISH-0.1.3.tar.gz#sha256=219d80dd5c1ca96fd7ae6c28984168c420e0af4c2094f3f18308155005385a38 (from https://pypi.org/simple/pysmfish/), version: 0.1.3
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/be/a4/e5a91424d23e518f62ecc1f922b28e51f0a35a5c1b84cd28fc4747b7c983/pysmFISH-0.1.4.tar.gz#sha256=fa49872a8b2b7e5db5d8fd0d3d97dd0466dc5e2804318b9c52e5ff313fffb664 (from https://pypi.org/simple/pysmfish/), version: 0.1.4
2019-07-15T09:15:59     Found link https://files.pythonhosted.org/packages/a9/6b/2aa9f484f46ad6c23d03e894ce3ace9605b7a4ee9df45394562654109e18/pysmFISH-0.1.5.tar.gz#sha256=d3e480214e08541000e51bb03780a25134a0d5f6a817548c6edf44f03302a001 (from https://pypi.org/simple/pysmfish/), version: 0.1.5
2019-07-15T09:15:59   Using version 0.0.4 (newest of versions: 0.0.4)
2019-07-15T09:15:59   Created temporary directory: /tmp/pip-unpack-gb9gr2ok
2019-07-15T09:15:59   Downloading https://files.pythonhosted.org/packages/d3/dc/78ba2ddde40f293df8177542e0eb78fc644019a4e4457caf52662dc7a51f/pysmFISH-0.0.4.tar.gz (85kB)
2019-07-15T09:15:59   Downloading from URL https://files.pythonhosted.org/packages/d3/dc/78ba2ddde40f293df8177542e0eb78fc644019a4e4457caf52662dc7a51f/pysmFISH-0.0.4.tar.gz#sha256=f9b46848b13f0575a062bb890e8042b312c4f0bf7facb66cb69bba26f3732fd7 (from https://pypi.org/simple/pysmfish/) (requires-python:>3.6)
2019-07-15T09:15:59   Added pysmFISH==0.0.4 from https://files.pythonhosted.org/packages/d3/dc/78ba2ddde40f293df8177542e0eb78fc644019a4e4457caf52662dc7a51f/pysmFISH-0.0.4.tar.gz#sha256=f9b46848b13f0575a062bb890e8042b312c4f0bf7facb66cb69bba26f3732fd7 to build tracker '/tmp/pip-req-tracker-xgnbp9tp'
2019-07-15T09:15:59     Running setup.py (path:/tmp/pip-wheel-rw_z4bcm/pysmFISH/setup.py) egg_info for package pysmFISH
2019-07-15T09:15:59     Running command python setup.py egg_info
2019-07-15T09:16:01     running egg_info
2019-07-15T09:16:01     creating pip-egg-info/pysmFISH.egg-info
2019-07-15T09:16:01     writing pip-egg-info/pysmFISH.egg-info/PKG-INFO
2019-07-15T09:16:01     writing dependency_links to pip-egg-info/pysmFISH.egg-info/dependency_links.txt
2019-07-15T09:16:01     writing entry points to pip-egg-info/pysmFISH.egg-info/entry_points.txt
2019-07-15T09:16:01     writing requirements to pip-egg-info/pysmFISH.egg-info/requires.txt
2019-07-15T09:16:01     writing top-level names to pip-egg-info/pysmFISH.egg-info/top_level.txt
2019-07-15T09:16:01     writing manifest file 'pip-egg-info/pysmFISH.egg-info/SOURCES.txt'
2019-07-15T09:16:01     reading manifest file 'pip-egg-info/pysmFISH.egg-info/SOURCES.txt'
2019-07-15T09:16:01     reading manifest template 'MANIFEST.in'
2019-07-15T09:16:01     writing manifest file 'pip-egg-info/pysmFISH.egg-info/SOURCES.txt'
2019-07-15T09:16:01   Source in /tmp/pip-wheel-rw_z4bcm/pysmFISH has version 0.0.4, which satisfies requirement pysmFISH==0.0.4 from https://files.pythonhosted.org/packages/d3/dc/78ba2ddde40f293df8177542e0eb78fc644019a4e4457caf52662dc7a51f/pysmFISH-0.0.4.tar.gz#sha256=f9b46848b13f0575a062bb890e8042b312c4f0bf7facb66cb69bba26f3732fd7
2019-07-15T09:16:01   Removed pysmFISH==0.0.4 from https://files.pythonhosted.org/packages/d3/dc/78ba2ddde40f293df8177542e0eb78fc644019a4e4457caf52662dc7a51f/pysmFISH-0.0.4.tar.gz#sha256=f9b46848b13f0575a062bb890e8042b312c4f0bf7facb66cb69bba26f3732fd7 from build tracker '/tmp/pip-req-tracker-xgnbp9tp'
2019-07-15T09:16:01 Building wheels for collected packages: pysmFISH
2019-07-15T09:16:01   Created temporary directory: /tmp/pip-wheel-mj448ny0
2019-07-15T09:16:01   Building wheel for pysmFISH (setup.py): started
2019-07-15T09:16:01   Destination directory: /tmp/pip-wheel-mj448ny0
2019-07-15T09:16:01   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-rw_z4bcm/pysmFISH/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-mj448ny0
2019-07-15T09:16:03   running bdist_wheel
2019-07-15T09:16:03   running build
2019-07-15T09:16:03   running build_py
2019-07-15T09:16:04   creating build
2019-07-15T09:16:04   creating build/lib
2019-07-15T09:16:04   creating build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/object_based_segmentation.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/io.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/filtering.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/__init__.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/hdf5_utils.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/utils.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/_version.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/dots_calling.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/counting.py -> build/lib/pysmFISH
2019-07-15T09:16:04   copying pysmFISH/dots_coords_calculations.py -> build/lib/pysmFISH
2019-07-15T09:16:04   creating build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/hybregistration.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/pairwisesingle.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/__init__.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/pairwisehelper.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/hdf5preparation.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/MicroscopeData.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/tilejoining.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/stitching.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/inout.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   copying pysmFISH/stitching_package/GlobalOptimization.py -> build/lib/pysmFISH/stitching_package
2019-07-15T09:16:04   installing to build/bdist.linux-armv7l/wheel
2019-07-15T09:16:04   running install
2019-07-15T09:16:04   running install_lib
2019-07-15T09:16:04   creating build/bdist.linux-armv7l
2019-07-15T09:16:04   creating build/bdist.linux-armv7l/wheel
2019-07-15T09:16:04   creating build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/object_based_segmentation.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/io.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/filtering.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/__init__.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/hdf5_utils.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/utils.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   creating build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/hybregistration.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/pairwisesingle.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/__init__.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/pairwisehelper.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/hdf5preparation.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/MicroscopeData.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/tilejoining.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/stitching.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/inout.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/stitching_package/GlobalOptimization.py -> build/bdist.linux-armv7l/wheel/pysmFISH/stitching_package
2019-07-15T09:16:04   copying build/lib/pysmFISH/_version.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/dots_calling.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/counting.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   copying build/lib/pysmFISH/dots_coords_calculations.py -> build/bdist.linux-armv7l/wheel/pysmFISH
2019-07-15T09:16:04   running install_egg_info
2019-07-15T09:16:04   running egg_info
2019-07-15T09:16:04   writing pysmFISH.egg-info/PKG-INFO
2019-07-15T09:16:04   writing dependency_links to pysmFISH.egg-info/dependency_links.txt
2019-07-15T09:16:04   writing entry points to pysmFISH.egg-info/entry_points.txt
2019-07-15T09:16:04   writing requirements to pysmFISH.egg-info/requires.txt
2019-07-15T09:16:04   writing top-level names to pysmFISH.egg-info/top_level.txt
2019-07-15T09:16:04   reading manifest file 'pysmFISH.egg-info/SOURCES.txt'
2019-07-15T09:16:04   reading manifest template 'MANIFEST.in'
2019-07-15T09:16:04   writing manifest file 'pysmFISH.egg-info/SOURCES.txt'
2019-07-15T09:16:04   Copying pysmFISH.egg-info to build/bdist.linux-armv7l/wheel/pysmFISH-0.0.4-py3.7.egg-info
2019-07-15T09:16:04   running install_scripts
2019-07-15T09:16:04   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2019-07-15T09:16:04   creating build/bdist.linux-armv7l/wheel/pysmFISH-0.0.4.dist-info/WHEEL
2019-07-15T09:16:04   creating '/tmp/pip-wheel-mj448ny0/pysmFISH-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-15T09:16:04   adding 'pysmFISH/__init__.py'
2019-07-15T09:16:04   adding 'pysmFISH/_version.py'
2019-07-15T09:16:04   adding 'pysmFISH/counting.py'
2019-07-15T09:16:04   adding 'pysmFISH/dots_calling.py'
2019-07-15T09:16:04   adding 'pysmFISH/dots_coords_calculations.py'
2019-07-15T09:16:04   adding 'pysmFISH/filtering.py'
2019-07-15T09:16:04   adding 'pysmFISH/hdf5_utils.py'
2019-07-15T09:16:04   adding 'pysmFISH/io.py'
2019-07-15T09:16:04   adding 'pysmFISH/object_based_segmentation.py'
2019-07-15T09:16:04   adding 'pysmFISH/utils.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/GlobalOptimization.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/MicroscopeData.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/__init__.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/hdf5preparation.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/hybregistration.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/inout.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/pairwisehelper.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/pairwisesingle.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/stitching.py'
2019-07-15T09:16:04   adding 'pysmFISH/stitching_package/tilejoining.py'
2019-07-15T09:16:04   adding 'pysmFISH-0.0.4.dist-info/LICENSE'
2019-07-15T09:16:04   adding 'pysmFISH-0.0.4.dist-info/METADATA'
2019-07-15T09:16:04   adding 'pysmFISH-0.0.4.dist-info/WHEEL'
2019-07-15T09:16:04   adding 'pysmFISH-0.0.4.dist-info/entry_points.txt'
2019-07-15T09:16:04   adding 'pysmFISH-0.0.4.dist-info/top_level.txt'
2019-07-15T09:16:04   adding 'pysmFISH-0.0.4.dist-info/RECORD'
2019-07-15T09:16:04   removing build/bdist.linux-armv7l/wheel
2019-07-15T09:16:05   Building wheel for pysmFISH (setup.py): finished with status 'done'
2019-07-15T09:16:05   Stored in directory: /tmp/tmpwqa7ye6j
2019-07-15T09:16:05 Successfully built pysmFISH
2019-07-15T09:16:05 Cleaning up...
2019-07-15T09:16:05   Removing source in /tmp/pip-wheel-rw_z4bcm/pysmFISH
2019-07-15T09:16:05 Removed build tracker '/tmp/pip-req-tracker-xgnbp9tp'