2019-07-15T16:40:54 Created temporary directory: /tmp/pip-ephem-wheel-cache-yq9xc1vo
2019-07-15T16:40:54 Created temporary directory: /tmp/pip-req-tracker-adutjne4
2019-07-15T16:40:54 Created requirements tracker '/tmp/pip-req-tracker-adutjne4'
2019-07-15T16:40:54 Created temporary directory: /tmp/pip-wheel-b5zcp4sd
2019-07-15T16:40:54 Collecting ISAMBARD==2.2.0
2019-07-15T16:40:54   1 location(s) to search for versions of ISAMBARD:
2019-07-15T16:40:54   * https://pypi.org/simple/isambard/
2019-07-15T16:40:54   Getting page https://pypi.org/simple/isambard/
2019-07-15T16:40:54   Analyzing links from page https://pypi.org/simple/isambard/
2019-07-15T16:40:54     Found link https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 (from https://pypi.org/simple/isambard/), version: 2.0.1
2019-07-15T16:40:54     Found link https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 (from https://pypi.org/simple/isambard/), version: 2.2.0
2019-07-15T16:40:54   Using version 2.2.0 (newest of versions: 2.2.0)
2019-07-15T16:40:54   Created temporary directory: /tmp/pip-unpack-n86hm8z0
2019-07-15T16:40:54   Downloading https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz (359kB)
2019-07-15T16:40:54   Downloading from URL https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 (from https://pypi.org/simple/isambard/)
2019-07-15T16:40:55   Added ISAMBARD==2.2.0 from https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 to build tracker '/tmp/pip-req-tracker-adutjne4'
2019-07-15T16:40:55     Running setup.py (path:/tmp/pip-wheel-b5zcp4sd/ISAMBARD/setup.py) egg_info for package ISAMBARD
2019-07-15T16:40:55     Running command python setup.py egg_info
2019-07-15T16:40:59     Compiling src/isambard/specifications/ta_polypeptide.pyx because it depends on /usr/lib/python3/dist-packages/Cython/Includes/libc/math.pxd.
2019-07-15T16:40:59     [1/1] Cythonizing src/isambard/specifications/ta_polypeptide.pyx
2019-07-15T16:40:59     running egg_info
2019-07-15T16:40:59     creating pip-egg-info/ISAMBARD.egg-info
2019-07-15T16:40:59     writing pip-egg-info/ISAMBARD.egg-info/PKG-INFO
2019-07-15T16:40:59     writing dependency_links to pip-egg-info/ISAMBARD.egg-info/dependency_links.txt
2019-07-15T16:40:59     writing requirements to pip-egg-info/ISAMBARD.egg-info/requires.txt
2019-07-15T16:40:59     writing top-level names to pip-egg-info/ISAMBARD.egg-info/top_level.txt
2019-07-15T16:40:59     writing manifest file 'pip-egg-info/ISAMBARD.egg-info/SOURCES.txt'
2019-07-15T16:40:59     reading manifest file 'pip-egg-info/ISAMBARD.egg-info/SOURCES.txt'
2019-07-15T16:41:00     reading manifest template 'MANIFEST.in'
2019-07-15T16:41:00     writing manifest file 'pip-egg-info/ISAMBARD.egg-info/SOURCES.txt'
2019-07-15T16:41:00     /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-b5zcp4sd/ISAMBARD/src/isambard/specifications/ta_polypeptide.pyx
2019-07-15T16:41:00       tree = Parsing.p_module(s, pxd, full_module_name)
2019-07-15T16:41:00   Source in /tmp/pip-wheel-b5zcp4sd/ISAMBARD has version 2.2.0, which satisfies requirement ISAMBARD==2.2.0 from https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51
2019-07-15T16:41:00   Removed ISAMBARD==2.2.0 from https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 from build tracker '/tmp/pip-req-tracker-adutjne4'
2019-07-15T16:41:00 Building wheels for collected packages: ISAMBARD
2019-07-15T16:41:00   Created temporary directory: /tmp/pip-wheel-19wuvykb
2019-07-15T16:41:00   Building wheel for ISAMBARD (setup.py): started
2019-07-15T16:41:00   Destination directory: /tmp/pip-wheel-19wuvykb
2019-07-15T16:41:00   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-b5zcp4sd/ISAMBARD/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-19wuvykb
2019-07-15T16:41:03   running bdist_wheel
2019-07-15T16:41:03   running build
2019-07-15T16:41:03   running build_py
2019-07-15T16:41:03   creating build
2019-07-15T16:41:03   creating build/lib.linux-armv7l-3.7
2019-07-15T16:41:03   creating build/lib.linux-armv7l-3.7/isambard
2019-07-15T16:41:03   copying src/isambard/__init__.py -> build/lib.linux-armv7l-3.7/isambard
2019-07-15T16:41:03   creating build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   copying src/isambard/specifications/nucleic_acid_strand.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   copying src/isambard/specifications/__init__.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   copying src/isambard/specifications/coiledcoil.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   copying src/isambard/specifications/nucleic_acid_duplex.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   copying src/isambard/specifications/solenoid.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   copying src/isambard/specifications/helix.py -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:03   creating build/lib.linux-armv7l-3.7/isambard/evaluation
2019-07-15T16:41:03   copying src/isambard/evaluation/dssp.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2019-07-15T16:41:03   copying src/isambard/evaluation/contact_order.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2019-07-15T16:41:04   copying src/isambard/evaluation/__init__.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2019-07-15T16:41:04   copying src/isambard/evaluation/hydrophobic_fitness.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2019-07-15T16:41:04   copying src/isambard/evaluation/pacc.py -> build/lib.linux-armv7l-3.7/isambard/evaluation
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/optimisation
2019-07-15T16:41:04   copying src/isambard/optimisation/__init__.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2019-07-15T16:41:04   copying src/isambard/optimisation/evo_optimizers.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2019-07-15T16:41:04   copying src/isambard/optimisation/base_evo_opt.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2019-07-15T16:41:04   copying src/isambard/optimisation/mmc_optimizer.py -> build/lib.linux-armv7l-3.7/isambard/optimisation
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/modelling
2019-07-15T16:41:04   copying src/isambard/modelling/__init__.py -> build/lib.linux-armv7l-3.7/isambard/modelling
2019-07-15T16:41:04   copying src/isambard/modelling/non_canonical.py -> build/lib.linux-armv7l-3.7/isambard/modelling
2019-07-15T16:41:04   copying src/isambard/modelling/scwrl.py -> build/lib.linux-armv7l-3.7/isambard/modelling
2019-07-15T16:41:04   running egg_info
2019-07-15T16:41:04   writing src/ISAMBARD.egg-info/PKG-INFO
2019-07-15T16:41:04   writing dependency_links to src/ISAMBARD.egg-info/dependency_links.txt
2019-07-15T16:41:04   writing requirements to src/ISAMBARD.egg-info/requires.txt
2019-07-15T16:41:04   writing top-level names to src/ISAMBARD.egg-info/top_level.txt
2019-07-15T16:41:04   reading manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2019-07-15T16:41:04   reading manifest template 'MANIFEST.in'
2019-07-15T16:41:04   writing manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/__pycache__
2019-07-15T16:41:04   copying src/isambard/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/ta_polypeptide.c -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:04   copying src/isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:04   copying src/isambard/specifications/ta_polypeptide.pyx -> build/lib.linux-armv7l-3.7/isambard/specifications
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/__pycache__/helix.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   copying src/isambard/specifications/__pycache__/solenoid.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2019-07-15T16:41:04   copying src/isambard/evaluation/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2019-07-15T16:41:04   copying src/isambard/evaluation/__pycache__/contact_order.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2019-07-15T16:41:04   copying src/isambard/evaluation/__pycache__/dssp.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2019-07-15T16:41:04   copying src/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2019-07-15T16:41:04   copying src/isambard/evaluation/__pycache__/pacc.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__
2019-07-15T16:41:04   copying src/isambard/optimisation/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__
2019-07-15T16:41:04   copying src/isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__
2019-07-15T16:41:04   copying src/isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__
2019-07-15T16:41:04   copying src/isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/create_loop_data.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/create_loop_database.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/create_loop_db.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/extract_loop_data.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/loop_fitter.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/loop_fitting.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/non_canonical.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   copying src/isambard/modelling/__pycache__/scwrl.cpython-36.pyc -> build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals
2019-07-15T16:41:04   copying src/isambard/modelling/reference_ampals/README.md -> build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals
2019-07-15T16:41:04   creating build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/non_canonical_amino_acids
2019-07-15T16:41:04   copying src/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/non_canonical_amino_acids
2019-07-15T16:41:04   running build_ext
2019-07-15T16:41:04   building 'isambard.specifications.ta_polypeptide' extension
2019-07-15T16:41:04   creating build/temp.linux-armv7l-3.7
2019-07-15T16:41:04   creating build/temp.linux-armv7l-3.7/src
2019-07-15T16:41:04   creating build/temp.linux-armv7l-3.7/src/isambard
2019-07-15T16:41:04   creating build/temp.linux-armv7l-3.7/src/isambard/specifications
2019-07-15T16:41:04   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c src/isambard/specifications/ta_polypeptide.c -o build/temp.linux-armv7l-3.7/src/isambard/specifications/ta_polypeptide.o
2019-07-15T16:41:35   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/isambard/specifications/ta_polypeptide.o -o build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.cpython-37m-arm-linux-gnueabihf.so
2019-07-15T16:41:35   installing to build/bdist.linux-armv7l/wheel
2019-07-15T16:41:35   running install
2019-07-15T16:41:35   running install_lib
2019-07-15T16:41:35   creating build/bdist.linux-armv7l
2019-07-15T16:41:35   creating build/bdist.linux-armv7l/wheel
2019-07-15T16:41:35   creating build/bdist.linux-armv7l/wheel/isambard
2019-07-15T16:41:35   creating build/bdist.linux-armv7l/wheel/isambard/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/__init__.py -> build/bdist.linux-armv7l/wheel/isambard
2019-07-15T16:41:35   creating build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:35   creating build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__/solenoid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__pycache__/helix.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/nucleic_acid_strand.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/coiledcoil.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:35   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/specifications/nucleic_acid_duplex.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.c -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/specifications/solenoid.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/specifications/helix.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/specifications/ta_polypeptide.pyx -> build/bdist.linux-armv7l/wheel/isambard/specifications
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/evaluation
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/dssp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/contact_order.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__pycache__/pacc.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/dssp.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/contact_order.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/hydrophobic_fitness.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/evaluation/pacc.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/optimisation
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/evo_optimizers.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/base_evo_opt.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/optimisation/mmc_optimizer.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/modelling
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/non_canonical.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/extract_loop_data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/create_loop_db.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/create_loop_database.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/loop_fitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/create_loop_data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/loop_fitter.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__pycache__/scwrl.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/reference_ampals/README.md -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/non_canonical.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2019-07-15T16:41:36   copying build/lib.linux-armv7l-3.7/isambard/modelling/scwrl.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2019-07-15T16:41:36   running install_egg_info
2019-07-15T16:41:36   Copying src/ISAMBARD.egg-info to build/bdist.linux-armv7l/wheel/ISAMBARD-2.2.0-py3.7.egg-info
2019-07-15T16:41:36   running install_scripts
2019-07-15T16:41:36   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2019-07-15T16:41:36   creating build/bdist.linux-armv7l/wheel/ISAMBARD-2.2.0.dist-info/WHEEL
2019-07-15T16:41:36   creating '/tmp/pip-wheel-19wuvykb/ISAMBARD-2.2.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-15T16:41:36   adding 'isambard/__init__.py'
2019-07-15T16:41:36   adding 'isambard/__pycache__/__init__.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/evaluation/__init__.py'
2019-07-15T16:41:36   adding 'isambard/evaluation/contact_order.py'
2019-07-15T16:41:36   adding 'isambard/evaluation/dssp.py'
2019-07-15T16:41:36   adding 'isambard/evaluation/hydrophobic_fitness.py'
2019-07-15T16:41:36   adding 'isambard/evaluation/pacc.py'
2019-07-15T16:41:36   adding 'isambard/evaluation/__pycache__/__init__.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/evaluation/__pycache__/contact_order.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/evaluation/__pycache__/dssp.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/evaluation/__pycache__/pacc.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__init__.py'
2019-07-15T16:41:36   adding 'isambard/modelling/non_canonical.py'
2019-07-15T16:41:36   adding 'isambard/modelling/scwrl.py'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/__init__.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/create_loop_data.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/create_loop_database.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/create_loop_db.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/extract_loop_data.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/loop_fitter.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/loop_fitting.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/non_canonical.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/__pycache__/scwrl.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/modelling/reference_ampals/README.md'
2019-07-15T16:41:36   adding 'isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle'
2019-07-15T16:41:36   adding 'isambard/optimisation/__init__.py'
2019-07-15T16:41:36   adding 'isambard/optimisation/base_evo_opt.py'
2019-07-15T16:41:36   adding 'isambard/optimisation/evo_optimizers.py'
2019-07-15T16:41:36   adding 'isambard/optimisation/mmc_optimizer.py'
2019-07-15T16:41:36   adding 'isambard/optimisation/__pycache__/__init__.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc'
2019-07-15T16:41:36   adding 'isambard/specifications/__init__.py'
2019-07-15T16:41:36   adding 'isambard/specifications/coiledcoil.py'
2019-07-15T16:41:36   adding 'isambard/specifications/helix.py'
2019-07-15T16:41:36   adding 'isambard/specifications/nucleic_acid_duplex.py'
2019-07-15T16:41:36   adding 'isambard/specifications/nucleic_acid_strand.py'
2019-07-15T16:41:36   adding 'isambard/specifications/solenoid.py'
2019-07-15T16:41:36   adding 'isambard/specifications/ta_polypeptide.c'
2019-07-15T16:41:37   adding 'isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so'
2019-07-15T16:41:37   adding 'isambard/specifications/ta_polypeptide.cpython-37m-arm-linux-gnueabihf.so'
2019-07-15T16:41:37   adding 'isambard/specifications/ta_polypeptide.pyx'
2019-07-15T16:41:37   adding 'isambard/specifications/__pycache__/__init__.cpython-36.pyc'
2019-07-15T16:41:37   adding 'isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc'
2019-07-15T16:41:37   adding 'isambard/specifications/__pycache__/helix.cpython-36.pyc'
2019-07-15T16:41:37   adding 'isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc'
2019-07-15T16:41:37   adding 'isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc'
2019-07-15T16:41:37   adding 'isambard/specifications/__pycache__/solenoid.cpython-36.pyc'
2019-07-15T16:41:37   adding 'ISAMBARD-2.2.0.dist-info/LICENSE.txt'
2019-07-15T16:41:37   adding 'ISAMBARD-2.2.0.dist-info/METADATA'
2019-07-15T16:41:37   adding 'ISAMBARD-2.2.0.dist-info/WHEEL'
2019-07-15T16:41:37   adding 'ISAMBARD-2.2.0.dist-info/top_level.txt'
2019-07-15T16:41:37   adding 'ISAMBARD-2.2.0.dist-info/RECORD'
2019-07-15T16:41:37   removing build/bdist.linux-armv7l/wheel
2019-07-15T16:41:37   Building wheel for ISAMBARD (setup.py): finished with status 'done'
2019-07-15T16:41:37   Stored in directory: /tmp/tmplbixij43
2019-07-15T16:41:37 Successfully built ISAMBARD
2019-07-15T16:41:37 Cleaning up...
2019-07-15T16:41:37   Removing source in /tmp/pip-wheel-b5zcp4sd/ISAMBARD
2019-07-15T16:41:37 Removed build tracker '/tmp/pip-req-tracker-adutjne4'