2019-07-16T01:59:00 Created temporary directory: /tmp/pip-ephem-wheel-cache-casivrhp
2019-07-16T01:59:00 Created temporary directory: /tmp/pip-req-tracker-4jdbe2wl
2019-07-16T01:59:00 Created requirements tracker '/tmp/pip-req-tracker-4jdbe2wl'
2019-07-16T01:59:00 Created temporary directory: /tmp/pip-wheel-ck6y27jx
2019-07-16T01:59:00 Collecting scipion-em-xmipp==19.3.3b5
2019-07-16T01:59:00   1 location(s) to search for versions of scipion-em-xmipp:
2019-07-16T01:59:00   * https://pypi.org/simple/scipion-em-xmipp/
2019-07-16T01:59:00   Getting page https://pypi.org/simple/scipion-em-xmipp/
2019-07-16T01:59:01   Analyzing links from page https://pypi.org/simple/scipion-em-xmipp/
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/ac/e8/0b29e46431aa1223befa2a698d198863c12304274306b16832cfd454e3f9/scipion-em-xmipp-1.0.0a1.tar.gz#sha256=4fd9241c7309d7d6b7974e75725b15273b23e03f4312c835c3d88cad41e9eb53 (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0a1
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz#sha256=e832df0ef28809c985011c60136f02da5c81c351b12f72eda1eee8ec27b74e50 (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0b1
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/27/04/5659119b2d4622b274555e6175dec47a4dca6dc7eba56bc469bbadac71a3/scipion-em-xmipp-19.3b0.tar.gz#sha256=4e70574c970e45d3b882883ddd44b70df69a0fe558776c22f4c748649fd98a96 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3b0
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/3a/d9/3171cd2d43aa40510db86a86ed766d314f549f4583119548e538ae97444f/scipion-em-xmipp-19.3.1b0.tar.gz#sha256=345dd18b6faa9bf67595e68bce88bc8b6c8e169faddb504754d63555e1c02fec (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.1b0
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/50/7c/87e8f5031f14f5daf04b3a77e5018028c4d47325635d683428fbe478e719/scipion-em-xmipp-19.3.2b0.tar.gz#sha256=3423ae678c49ecf480f6a9e76a57210a0868d57d357bf6e8ffaa77b62016459b (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.2b0
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/02/10/513a51ad147a24e33797b5114b67e98038390b70cc17df25a7191d468134/scipion-em-xmipp-19.3.3b0.tar.gz#sha256=73a8b13f467597bf7364cc1ebdf70339bfe93a8cddc8ef44a03989a98adbeb70 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b0
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/8f/92/d59d3d7361e247fb3d74ffe5920f7353b38a3a051f91d6b9bf6357581fe9/scipion-em-xmipp-19.3.3b2.tar.gz#sha256=43d02ee96c7420299327a59bb40ed294dd8bfedfbe46feb81e5858ffa39e6086 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b2
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/30/cc/45f5761a8c4f656881dbe55c351a268bcbdfd9ca9d159900755848ecd657/scipion-em-xmipp-19.3.3b3.tar.gz#sha256=e756fd1cb86c6db70fe83a3c1b92fe1e9bda45a3b659365a562c058a42f2af3e (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b3
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/13/53/fd16ab9eff7bc97c50fcab52ecff83523239910c2da6717d84def4678bc5/scipion-em-xmipp-19.3.3b4.tar.gz#sha256=d62576b4f4eead11762a5964a07f05f307fef3e66d2a03d189cdde3a8fdb0a4f (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b4
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz#sha256=a40253cca60b8d9fc1a946919f3b52bd6d01ec9697f1c523d122451499b0674a (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b5
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/28/82/40c0b017805993ad642717a1b7e835ff4124a29c5fdf5d825103c2fe415f/scipion-em-xmipp-19.3.3b6.tar.gz#sha256=5afb34b4d86b455789d0c78d10571f4a8397d01c247de58cd62e3b8a2ad81852 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b6
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/23/da/189566d17133de5827f7850766cde4176f6845b63f0b5c485b2306753307/scipion-em-xmipp-19.3.3b7.tar.gz#sha256=9406963b059a70b9c2a416a2d3b896abcc2c166d3e691dd20608b9c53f979b24 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b7
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/a7/84/175f6dbf280848bd4b1053321385381a2930fa37116241645254068f01b2/scipion-em-xmipp-19.3.3b8.tar.gz#sha256=5ec6315316a908dd66160585107be6f966a3a21d5bf796007c21a933eb51b60f (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b8
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/b8/12/cd3ddb5a1d8aa235c8791e2b230b121477d3bc5ee63792d8d7e66738d835/scipion-em-xmipp-19.4.tar.gz#sha256=5b6b88144a19bd9b75bddb766c79d777bef3bb1b4a7c0bfff5dd5b8cbdcda5ee (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/c0/5b/4ecca6d5dbc925ec19ce98bd3e76b2459be8efd280241cab17f57b7b8bf1/scipion-em-xmipp-19.4.1.tar.gz#sha256=e737dc62f611bd34ad9d6d12bf7e2db7e3479b8e01fb4fed6b7967aea0f11bf1 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.1
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/78/a5/013710e0192dc4d8312b06b17c393d9ae01ee6370fac5c0374ab0f99d540/scipion-em-xmipp-19.4.2.tar.gz#sha256=ee889a8ee479f8023b894e5abf64d6fbccd3ed86d2571dfc351412fecbb9c337 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.2
2019-07-16T01:59:01     Found link https://files.pythonhosted.org/packages/8a/e5/2a7960924fff02c71b3af6308001de11cf4d754db3355562692aa7fc4186/scipion-em-xmipp-19.4.3.tar.gz#sha256=e00db2060707526ab59ddc2275bc38273c69eab0c904f6a040d09e633df94d52 (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.3
2019-07-16T01:59:01   Using version 19.3.3b5 (newest of versions: 19.3.3b5)
2019-07-16T01:59:01   Created temporary directory: /tmp/pip-unpack-ubxdqxrw
2019-07-16T01:59:01   Downloading https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz (619kB)
2019-07-16T01:59:01   Downloading from URL https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz#sha256=a40253cca60b8d9fc1a946919f3b52bd6d01ec9697f1c523d122451499b0674a (from https://pypi.org/simple/scipion-em-xmipp/)
2019-07-16T01:59:03   Added scipion-em-xmipp==19.3.3b5 from https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz#sha256=a40253cca60b8d9fc1a946919f3b52bd6d01ec9697f1c523d122451499b0674a to build tracker '/tmp/pip-req-tracker-4jdbe2wl'
2019-07-16T01:59:03     Running setup.py (path:/tmp/pip-wheel-ck6y27jx/scipion-em-xmipp/setup.py) egg_info for package scipion-em-xmipp
2019-07-16T01:59:03     Running command python setup.py egg_info
2019-07-16T01:59:05     running egg_info
2019-07-16T01:59:05     creating pip-egg-info/scipion_em_xmipp.egg-info
2019-07-16T01:59:05     writing top-level names to pip-egg-info/scipion_em_xmipp.egg-info/top_level.txt
2019-07-16T01:59:05     writing dependency_links to pip-egg-info/scipion_em_xmipp.egg-info/dependency_links.txt
2019-07-16T01:59:05     writing pip-egg-info/scipion_em_xmipp.egg-info/PKG-INFO
2019-07-16T01:59:05     writing manifest file 'pip-egg-info/scipion_em_xmipp.egg-info/SOURCES.txt'
2019-07-16T01:59:05     reading manifest file 'pip-egg-info/scipion_em_xmipp.egg-info/SOURCES.txt'
2019-07-16T01:59:05     reading manifest template 'MANIFEST.in'
2019-07-16T01:59:05     writing manifest file 'pip-egg-info/scipion_em_xmipp.egg-info/SOURCES.txt'
2019-07-16T01:59:05     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:470: UserWarning: Normalizing '19.03.03b5' to '19.3.3b5'
2019-07-16T01:59:05       normalized_version,
2019-07-16T01:59:05   Source in /tmp/pip-wheel-ck6y27jx/scipion-em-xmipp has version 19.3.3b5, which satisfies requirement scipion-em-xmipp==19.3.3b5 from https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz#sha256=a40253cca60b8d9fc1a946919f3b52bd6d01ec9697f1c523d122451499b0674a
2019-07-16T01:59:05   Removed scipion-em-xmipp==19.3.3b5 from https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz#sha256=a40253cca60b8d9fc1a946919f3b52bd6d01ec9697f1c523d122451499b0674a from build tracker '/tmp/pip-req-tracker-4jdbe2wl'
2019-07-16T01:59:05 Building wheels for collected packages: scipion-em-xmipp
2019-07-16T01:59:05   Created temporary directory: /tmp/pip-wheel-2j57k9v9
2019-07-16T01:59:05   Building wheel for scipion-em-xmipp (setup.py): started
2019-07-16T01:59:05   Destination directory: /tmp/pip-wheel-2j57k9v9
2019-07-16T01:59:05   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ck6y27jx/scipion-em-xmipp/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2j57k9v9
2019-07-16T01:59:07   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:470: UserWarning: Normalizing '19.03.03b5' to '19.3.3b5'
2019-07-16T01:59:07     normalized_version,
2019-07-16T01:59:07   running bdist_wheel
2019-07-16T01:59:07   running build
2019-07-16T01:59:07   running build_py
2019-07-16T01:59:08   creating build
2019-07-16T01:59:08   creating build/lib
2019-07-16T01:59:08   creating build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/bibtex.py -> build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/constants.py -> build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/__init__.py -> build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/base.py -> build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/utils.py -> build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/programs.py -> build/lib/xmipp3
2019-07-16T01:59:08   copying xmipp3/wizards.py -> build/lib/xmipp3
2019-07-16T01:59:08   creating build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_split_volume.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_extract_unit_cell.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_mltomo.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_nma_dimred.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_cltomo.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_resolution_monotomo.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_pseudoatoms.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_solid_angles.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_nma_alignment.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_nma.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/nma_plotter.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   copying xmipp3/viewers/viewer_structure_mapping.py -> build/lib/xmipp3/viewers
2019-07-16T01:59:08   creating build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_mltomo.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_monotomo.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_extract_unit_cell.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_structure_mapping.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   copying xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/tests
2019-07-16T01:59:08   creating build/lib/xmipp3/convert
2019-07-16T01:59:08   copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert
2019-07-16T01:59:08   copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert
2019-07-16T01:59:08   copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert
2019-07-16T01:59:08   copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert
2019-07-16T01:59:08   creating build/lib/xmipp3/protocols
2019-07-16T01:59:08   copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:08   copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:08   copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:08   copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:08   copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:08   copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_movie_average.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_3dbionotes.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_enrich.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_split_volume.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_cltomo.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_mltomo.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_solid_angles.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_movie_correlation.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_consensus_classes3D.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_resolution_monotomo.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_extract_unit_cell.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/protocols
2019-07-16T01:59:09   creating build/lib/xmipp3/viewers/nma_gui
2019-07-16T01:59:09   copying xmipp3/viewers/nma_gui/tk_trajectories.py -> build/lib/xmipp3/viewers/nma_gui
2019-07-16T01:59:09   copying xmipp3/viewers/nma_gui/tk_clustering.py -> build/lib/xmipp3/viewers/nma_gui
2019-07-16T01:59:09   copying xmipp3/viewers/nma_gui/matplotlib_point_selector.py -> build/lib/xmipp3/viewers/nma_gui
2019-07-16T01:59:09   copying xmipp3/viewers/nma_gui/matplotlib_point_path.py -> build/lib/xmipp3/viewers/nma_gui
2019-07-16T01:59:09   copying xmipp3/viewers/nma_gui/__init__.py -> build/lib/xmipp3/viewers/nma_gui
2019-07-16T01:59:09   creating build/lib/xmipp3/protocols/pdb
2019-07-16T01:59:09   copying xmipp3/protocols/pdb/protocol_convert_pdb.py -> build/lib/xmipp3/protocols/pdb
2019-07-16T01:59:09   copying xmipp3/protocols/pdb/__init__.py -> build/lib/xmipp3/protocols/pdb
2019-07-16T01:59:09   copying xmipp3/protocols/pdb/protocol_pseudoatoms.py -> build/lib/xmipp3/protocols/pdb
2019-07-16T01:59:09   copying xmipp3/protocols/pdb/protocol_pseudoatoms_base.py -> build/lib/xmipp3/protocols/pdb
2019-07-16T01:59:09   creating build/lib/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:09   creating build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:09   creating build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_nma_dimred.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/data.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_nma.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_nma_alignment.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_structure_mapping.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_batch_cluster.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/__init__.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_nma_base.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/convert.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols/nma/protocol_nma_choose.py -> build/lib/xmipp3/protocols/nma
2019-07-16T01:59:09   copying xmipp3/protocols.conf -> build/lib/xmipp3
2019-07-16T01:59:09   installing to build/bdist.linux-armv7l/wheel
2019-07-16T01:59:09   running install
2019-07-16T01:59:09   running install_lib
2019-07-16T01:59:09   creating build/bdist.linux-armv7l
2019-07-16T01:59:09   creating build/bdist.linux-armv7l/wheel
2019-07-16T01:59:09   creating build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_extract_unit_cell.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_nma_dimred.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_cltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_resolution_monotomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_pseudoatoms.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_nma_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_nma.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/nma_plotter.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/viewer_structure_mapping.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/nma_gui/tk_trajectories.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/nma_gui/tk_clustering.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/nma_gui/matplotlib_point_selector.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/nma_gui/matplotlib_point_path.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui
2019-07-16T01:59:10   copying build/lib/xmipp3/viewers/nma_gui/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/viewers/nma_gui
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_mltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_monotomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_extract_unit_cell.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_structure_mapping.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/xmipp3/tests
2019-07-16T01:59:10   copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/convert
2019-07-16T01:59:10   copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert
2019-07-16T01:59:10   copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert
2019-07-16T01:59:10   copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert
2019-07-16T01:59:10   copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/xmipp3/convert
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/pdb/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/pdb/protocol_pseudoatoms.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/pdb/protocol_pseudoatoms_base.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/pdb
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_3dbionotes.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:10   copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_cltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_movie_correlation.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_nma_dimred.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/data.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_nma.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_nma_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_structure_mapping.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_batch_cluster.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/__init__.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_nma_base.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/convert.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/nma/protocol_nma_choose.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols/nma
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_resolution_monotomo.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_extract_unit_cell.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/xmipp3/protocols
2019-07-16T01:59:11   copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:11   copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/xmipp3
2019-07-16T01:59:11   running install_egg_info
2019-07-16T01:59:11   running egg_info
2019-07-16T01:59:11   writing scipion_em_xmipp.egg-info/PKG-INFO
2019-07-16T01:59:11   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2019-07-16T01:59:11   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2019-07-16T01:59:11   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2019-07-16T01:59:11   reading manifest template 'MANIFEST.in'
2019-07-16T01:59:11   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2019-07-16T01:59:11   Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_xmipp-19.3.3b5-py3.5.egg-info
2019-07-16T01:59:11   running install_scripts
2019-07-16T01:59:11   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2019-07-16T01:59:11   creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-19.3.3b5.dist-info/WHEEL
2019-07-16T01:59:11   creating '/tmp/pip-wheel-2j57k9v9/scipion_em_xmipp-19.3.3b5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-16T01:59:11   adding 'xmipp3/__init__.py'
2019-07-16T01:59:11   adding 'xmipp3/base.py'
2019-07-16T01:59:11   adding 'xmipp3/bibtex.py'
2019-07-16T01:59:11   adding 'xmipp3/constants.py'
2019-07-16T01:59:11   adding 'xmipp3/programs.py'
2019-07-16T01:59:11   adding 'xmipp3/protocols.conf'
2019-07-16T01:59:11   adding 'xmipp3/utils.py'
2019-07-16T01:59:11   adding 'xmipp3/wizards.py'
2019-07-16T01:59:11   adding 'xmipp3/convert/__init__.py'
2019-07-16T01:59:11   adding 'xmipp3/convert/convert.py'
2019-07-16T01:59:11   adding 'xmipp3/convert/dataimport.py'
2019-07-16T01:59:11   adding 'xmipp3/convert/io_coordinates.py'
2019-07-16T01:59:11   adding 'xmipp3/protocols/__init__.py'
2019-07-16T01:59:11   adding 'xmipp3/protocols/protocol_3dbionotes.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_align_volume.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_align_volume_and_particles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_apply_alignment.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_break_symmetry.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_center_particles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_cl2d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_cl2d_align.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_classification_gpuCorr.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_classification_gpuCorr_full.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_classification_gpuCorr_semi.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_classify_kmeans2d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_cltomo.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_compare_angles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_compare_reprojections.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_consensus_classes3D.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_create_gallery.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_ctf_consensus.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_ctf_defocus_group.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_ctf_micrographs.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_deep_denoising.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_denoise_particles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_eliminate_empty_images.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_enrich.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_extract_particles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_extract_particles_movies.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_extract_particles_pairs.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_extract_unit_cell.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_generate_reprojections.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_helical_parameters.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_kerdensom.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_metaprotocol_create_output.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_metaprotocol_create_subset.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_ml2d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_mltomo.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_movie_average.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_movie_correlation.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_movie_gain.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_movie_max_shift.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_movie_opticalflow.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_multiple_fscs.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_multireference_alignability.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_normalize_strain.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_particle_boxsize.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_particle_pick.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_particle_pick_automatic.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_particle_pick_consensus.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_particle_pick_pairs.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_pick_noise.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess_micrographs.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_random_conical_tilt.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_ransac.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_reconstruct_fourier.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_reconstruct_heterogeneous.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_reconstruct_highres.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_reconstruct_significant.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_reconstruct_swarm.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_resolution3d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_resolution_directional.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_resolution_monotomo.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_rotational_spectra.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_rotational_symmetry.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_screen_deepConsensus.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_screen_deeplearning.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_screen_particles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_solid_angles.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_split_volume.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_split_volume_hierarchical_cluster.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_subtract_projection.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_trigger_data.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_validate_nontilt.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_validate_overfitting.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_volume_local_sharpening.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_volume_strain.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_write_testC.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_write_testP.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/convert.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/data.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_batch_cluster.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_nma.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_nma_alignment.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_nma_base.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_nma_choose.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_nma_dimred.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/nma/protocol_structure_mapping.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/pdb/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/pdb/protocol_convert_pdb.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/pdb/protocol_pseudoatoms.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/pdb/protocol_pseudoatoms_base.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_projmatch/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py'
2019-07-16T01:59:12   adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_convert_xmipp.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_compare_angles.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_consensus_classes3D.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_ctf_consensus.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_deep_denoising.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_extract_unit_cell.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_multiple_fsc.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_multireference_alignability.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_structure_mapping.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocol_validate_overfitting.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_add_noise.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_gpuCorr_classifier.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_gpuCorr_fullStreaming.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_gpuCorr_semiStreaming.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_highres.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_localdeblur.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_mixed_movies.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_mltomo.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_monores.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_monotomo.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_realignment_classes.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_solid_angles.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_subtract_projection.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_xmipp_2d.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_xmipp_3d.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_xmipp_mics.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py'
2019-07-16T01:59:12   adding 'xmipp3/tests/test_protocols_xmipp_movies.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/nma_plotter.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/plotter.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_cl2d.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_cltomo.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_ctf_consensus.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_deep_consensus.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_extract_unit_cell.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_ml2d.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_mltomo.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_movie_alignment.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_nma.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_nma_alignment.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_nma_dimred.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_normalize_strain.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_projmatch.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_pseudoatoms.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_ransac.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_reconstruct_highres.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_resolution3d.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_resolution_directional.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_resolution_monotomo.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_solid_angles.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_split_volume.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_structure_mapping.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_swarm.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_validate_nontilt.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_validate_overfitting.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/viewer_volume_strain.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/nma_gui/__init__.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/nma_gui/matplotlib_point_path.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/nma_gui/matplotlib_point_selector.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/nma_gui/tk_clustering.py'
2019-07-16T01:59:12   adding 'xmipp3/viewers/nma_gui/tk_trajectories.py'
2019-07-16T01:59:12   adding 'scipion_em_xmipp-19.3.3b5.dist-info/LICENSE'
2019-07-16T01:59:12   adding 'scipion_em_xmipp-19.3.3b5.dist-info/METADATA'
2019-07-16T01:59:12   adding 'scipion_em_xmipp-19.3.3b5.dist-info/WHEEL'
2019-07-16T01:59:12   adding 'scipion_em_xmipp-19.3.3b5.dist-info/top_level.txt'
2019-07-16T01:59:12   adding 'scipion_em_xmipp-19.3.3b5.dist-info/RECORD'
2019-07-16T01:59:12   removing build/bdist.linux-armv7l/wheel
2019-07-16T01:59:13   Building wheel for scipion-em-xmipp (setup.py): finished with status 'done'
2019-07-16T01:59:13   Stored in directory: /tmp/tmpkpciwowm
2019-07-16T01:59:13 Successfully built scipion-em-xmipp
2019-07-16T01:59:13 Cleaning up...
2019-07-16T01:59:13   Removing source in /tmp/pip-wheel-ck6y27jx/scipion-em-xmipp
2019-07-16T01:59:13 Removed build tracker '/tmp/pip-req-tracker-4jdbe2wl'