2019-07-17T01:32:38 Created temporary directory: /tmp/pip-ephem-wheel-cache-ieppghp5
2019-07-17T01:32:38 Created temporary directory: /tmp/pip-req-tracker-zxkz0rns
2019-07-17T01:32:38 Created requirements tracker '/tmp/pip-req-tracker-zxkz0rns'
2019-07-17T01:32:38 Created temporary directory: /tmp/pip-wheel-do3cwa6a
2019-07-17T01:32:38 Collecting gromacs-py==1.0.0.post2
2019-07-17T01:32:38   1 location(s) to search for versions of gromacs-py:
2019-07-17T01:32:38   * https://pypi.org/simple/gromacs-py/
2019-07-17T01:32:38   Getting page https://pypi.org/simple/gromacs-py/
2019-07-17T01:32:38   Analyzing links from page https://pypi.org/simple/gromacs-py/
2019-07-17T01:32:39     Found link https://files.pythonhosted.org/packages/81/19/aa84c354170f3da5036b2aa34fa95f328ee3b45a094cc2bfe706c21c0526/gromacs_py-1.0.tar.gz#sha256=197044e70905dcc36bf134f402687088ce3f68307545dd9a724a12d110a0e5c1 (from https://pypi.org/simple/gromacs-py/), version: 1.0
2019-07-17T01:32:39     Found link https://files.pythonhosted.org/packages/ea/c2/02fafcd4fd0eb34015e76700fa471653c613ee58c8931c0c06c4453b9b99/gromacs_py-1.0.0.post1.tar.gz#sha256=41ab83f8a5e541ebb3e422c398dea77e06411a9a015605733c2a4bc64d639d73 (from https://pypi.org/simple/gromacs-py/), version: 1.0.0.post1
2019-07-17T01:32:39     Found link https://files.pythonhosted.org/packages/ac/24/d8cff1d35512873e821972103480ed8133bdd0b670dee7520e40a167ff7f/gromacs_py-1.0.0.post2.tar.gz#sha256=16dc1ed4b0a32f1decb4f26065c67a60e67a5845f5bbe54d31c4a8016c95254b (from https://pypi.org/simple/gromacs-py/), version: 1.0.0.post2
2019-07-17T01:32:39     Found link https://files.pythonhosted.org/packages/05/69/2ee04de7229b6a6f33033fdf6c1f3a69f7da76383ac8d488db94698cb3a0/gromacs_py-1.0.0.post3.tar.gz#sha256=c270fb4a29b2b369c8b9b0f2f0d58742d72a472ce8f51051b51ea5fc3c122934 (from https://pypi.org/simple/gromacs-py/), version: 1.0.0.post3
2019-07-17T01:32:39     Found link https://files.pythonhosted.org/packages/a3/5b/afe1e0db10bcacbf20f6971f0a49c08bf37216f00869f699a0afd9a2017d/gromacs_py-1.0.0.post4.tar.gz#sha256=bbedcd55b4a808101681cae97bbf788274fe62de506c95042ac86c54a3358d08 (from https://pypi.org/simple/gromacs-py/), version: 1.0.0.post4
2019-07-17T01:32:39   Using version 1.0.0.post2 (newest of versions: 1.0.0.post2)
2019-07-17T01:32:39   Created temporary directory: /tmp/pip-unpack-q6nqq9pk
2019-07-17T01:32:39   Downloading https://files.pythonhosted.org/packages/ac/24/d8cff1d35512873e821972103480ed8133bdd0b670dee7520e40a167ff7f/gromacs_py-1.0.0.post2.tar.gz (944kB)
2019-07-17T01:32:39   Downloading from URL https://files.pythonhosted.org/packages/ac/24/d8cff1d35512873e821972103480ed8133bdd0b670dee7520e40a167ff7f/gromacs_py-1.0.0.post2.tar.gz#sha256=16dc1ed4b0a32f1decb4f26065c67a60e67a5845f5bbe54d31c4a8016c95254b (from https://pypi.org/simple/gromacs-py/)
2019-07-17T01:32:41   Added gromacs-py==1.0.0.post2 from https://files.pythonhosted.org/packages/ac/24/d8cff1d35512873e821972103480ed8133bdd0b670dee7520e40a167ff7f/gromacs_py-1.0.0.post2.tar.gz#sha256=16dc1ed4b0a32f1decb4f26065c67a60e67a5845f5bbe54d31c4a8016c95254b to build tracker '/tmp/pip-req-tracker-zxkz0rns'
2019-07-17T01:32:41     Running setup.py (path:/tmp/pip-wheel-do3cwa6a/gromacs-py/setup.py) egg_info for package gromacs-py
2019-07-17T01:32:41     Running command python setup.py egg_info
2019-07-17T01:32:56     Unable to init server: Could not connect: Connection refused
2019-07-17T01:32:57     Unable to init server: Could not connect: Connection refused

2019-07-17T01:32:57     (-c:10941): Gdk-CRITICAL **: 01:32:57.570: gdk_cursor_new_for_display: assertion 'GDK_IS_DISPLAY (display)' failed

2019-07-17T01:32:57     (-c:10941): Gdk-CRITICAL **: 01:32:57.600: gdk_cursor_new_for_display: assertion 'GDK_IS_DISPLAY (display)' failed
2019-07-17T01:33:00     Traceback (most recent call last):
2019-07-17T01:33:00       File "<string>", line 1, in <module>
2019-07-17T01:33:00       File "/tmp/pip-wheel-do3cwa6a/gromacs-py/setup.py", line 11, in <module>
2019-07-17T01:33:00         import gromacs_py
2019-07-17T01:33:00       File "/tmp/pip-wheel-do3cwa6a/gromacs-py/gromacs_py/__init__.py", line 10, in <module>
2019-07-17T01:33:00         from gromacs_py.gromacs.gmx5 import TopSys, Itp, TopMol, GmxSys
2019-07-17T01:33:00       File "/tmp/pip-wheel-do3cwa6a/gromacs-py/gromacs_py/gromacs/gmx5.py", line 24, in <module>
2019-07-17T01:33:00         from .tools import pdb2pqr
2019-07-17T01:33:00       File "/tmp/pip-wheel-do3cwa6a/gromacs-py/gromacs_py/gromacs/tools/pdb2pqr.py", line 27, in <module>
2019-07-17T01:33:00         PDB2PQR_BIN = os_command.which('pdb2pqr.py','pdb2pqr_cli')
2019-07-17T01:33:00       File "/tmp/pip-wheel-do3cwa6a/gromacs-py/gromacs_py/gromacs/tools/os_command.py", line 54, in which
2019-07-17T01:33:00         raise IOError("program not found :", program_list)
2019-07-17T01:33:00     OSError: [Errno program not found :] ('pdb2pqr.py', 'pdb2pqr_cli')
2019-07-17T01:33:00     program not found !!
2019-07-17T01:33:00 Cleaning up...
2019-07-17T01:33:00   Removing source in /tmp/pip-wheel-do3cwa6a/gromacs-py
2019-07-17T01:33:01 Removed gromacs-py==1.0.0.post2 from https://files.pythonhosted.org/packages/ac/24/d8cff1d35512873e821972103480ed8133bdd0b670dee7520e40a167ff7f/gromacs_py-1.0.0.post2.tar.gz#sha256=16dc1ed4b0a32f1decb4f26065c67a60e67a5845f5bbe54d31c4a8016c95254b from build tracker '/tmp/pip-req-tracker-zxkz0rns'
2019-07-17T01:33:01 Removed build tracker '/tmp/pip-req-tracker-zxkz0rns'
2019-07-17T01:33:01 ERROR: Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-wheel-do3cwa6a/gromacs-py/
2019-07-17T01:33:01 Exception information:
2019-07-17T01:33:01 Traceback (most recent call last):
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2019-07-17T01:33:01     status = self.run(options, args)
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 164, in run
2019-07-17T01:33:01     resolver.resolve(requirement_set)
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolve.py", line 131, in resolve
2019-07-17T01:33:01     self._resolve_one(requirement_set, req)
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolve.py", line 294, in _resolve_one
2019-07-17T01:33:01     abstract_dist = self._get_abstract_dist_for(req_to_install)
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/resolve.py", line 242, in _get_abstract_dist_for
2019-07-17T01:33:01     self.require_hashes
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 362, in prepare_linked_requirement
2019-07-17T01:33:01     abstract_dist.prep_for_dist(finder, self.build_isolation)
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/operations/prepare.py", line 171, in prep_for_dist
2019-07-17T01:33:01     self.req.prepare_metadata()
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 537, in prepare_metadata
2019-07-17T01:33:01     self.run_egg_info()
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/req/req_install.py", line 615, in run_egg_info
2019-07-17T01:33:01     command_desc='python setup.py egg_info')
2019-07-17T01:33:01   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/utils/misc.py", line 776, in call_subprocess
2019-07-17T01:33:01     % (command_desc, proc.returncode, cwd))
2019-07-17T01:33:01 pip._internal.exceptions.InstallationError: Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-wheel-do3cwa6a/gromacs-py/