2019-07-17T08:07:01 Created temporary directory: /tmp/pip-ephem-wheel-cache-6wslu386
2019-07-17T08:07:01 Created temporary directory: /tmp/pip-req-tracker-4p7hjxo5
2019-07-17T08:07:01 Created requirements tracker '/tmp/pip-req-tracker-4p7hjxo5'
2019-07-17T08:07:01 Created temporary directory: /tmp/pip-wheel-umck2ji0
2019-07-17T08:07:01 Collecting scipion-em-relion==1.0.4
2019-07-17T08:07:01   1 location(s) to search for versions of scipion-em-relion:
2019-07-17T08:07:01   * https://pypi.org/simple/scipion-em-relion/
2019-07-17T08:07:01   Getting page https://pypi.org/simple/scipion-em-relion/
2019-07-17T08:07:01   Analyzing links from page https://pypi.org/simple/scipion-em-relion/
2019-07-17T08:07:02     Found link https://files.pythonhosted.org/packages/05/a2/d5f1ffa8537f36f40b34263047919ae34baccbe64147bc68cc6c3f8777d9/scipion-em-relion-1.0.0.tar.gz#sha256=b12f8f634114a7e3cb0b33d7f6204bc47b8b5bb3815d3855feedbada752368fb (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.0
2019-07-17T08:07:02     Found link https://files.pythonhosted.org/packages/48/4b/02aa5c517d8e6db7aa85d26b76f016841c9e34d58e21e04fa23423a9ef06/scipion-em-relion-1.0.1.tar.gz#sha256=6d7d065852276760640e5c6cb90a35fa93e7096556cdd591d015085c4b3a2792 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.1
2019-07-17T08:07:02     Found link https://files.pythonhosted.org/packages/55/7b/90403e2f937a52301e27955b49665b462df0c4ab02da6444c01f3543ae42/scipion-em-relion-1.0.2.tar.gz#sha256=e53dc640184f6e78f8449bd9bf03524820495b8e2eaf219cc558a87da89dbf22 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.2
2019-07-17T08:07:02     Found link https://files.pythonhosted.org/packages/57/e2/3c6741b62688a1b20b159f7efa0139a9573eb17d72d745b3023f2e8a51fd/scipion-em-relion-1.0.3.tar.gz#sha256=5084bfc2edf75de02f0577fe57e3f63de3e20fff862a40525971c5c3682d072a (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.3
2019-07-17T08:07:02     Found link https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.4
2019-07-17T08:07:02     Found link https://files.pythonhosted.org/packages/fb/c0/9945e6d60f050b3493b46e980c1feaab668dee0cd15ba2b5030c2875bbf0/scipion-em-relion-1.0.5.tar.gz#sha256=2eeaed3eef32e0a16656bd36e4648aa68d6f3b45e8caa9e9a7af36e3a72b6449 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.5
2019-07-17T08:07:02   Using version 1.0.4 (newest of versions: 1.0.4)
2019-07-17T08:07:02   Created temporary directory: /tmp/pip-unpack-qq33u9tl
2019-07-17T08:07:02   Downloading https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz (168kB)
2019-07-17T08:07:02   Downloading from URL https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b (from https://pypi.org/simple/scipion-em-relion/)
2019-07-17T08:07:02   Added scipion-em-relion==1.0.4 from https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b to build tracker '/tmp/pip-req-tracker-4p7hjxo5'
2019-07-17T08:07:02     Running setup.py (path:/tmp/pip-wheel-umck2ji0/scipion-em-relion/setup.py) egg_info for package scipion-em-relion
2019-07-17T08:07:02     Running command python setup.py egg_info
2019-07-17T08:07:04     running egg_info
2019-07-17T08:07:04     creating pip-egg-info/scipion_em_relion.egg-info
2019-07-17T08:07:04     writing top-level names to pip-egg-info/scipion_em_relion.egg-info/top_level.txt
2019-07-17T08:07:04     writing dependency_links to pip-egg-info/scipion_em_relion.egg-info/dependency_links.txt
2019-07-17T08:07:04     writing pip-egg-info/scipion_em_relion.egg-info/PKG-INFO
2019-07-17T08:07:04     writing manifest file 'pip-egg-info/scipion_em_relion.egg-info/SOURCES.txt'
2019-07-17T08:07:04     reading manifest file 'pip-egg-info/scipion_em_relion.egg-info/SOURCES.txt'
2019-07-17T08:07:04     reading manifest template 'MANIFEST.in'
2019-07-17T08:07:04     writing manifest file 'pip-egg-info/scipion_em_relion.egg-info/SOURCES.txt'
2019-07-17T08:07:05   Source in /tmp/pip-wheel-umck2ji0/scipion-em-relion has version 1.0.4, which satisfies requirement scipion-em-relion==1.0.4 from https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b
2019-07-17T08:07:05   Removed scipion-em-relion==1.0.4 from https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b from build tracker '/tmp/pip-req-tracker-4p7hjxo5'
2019-07-17T08:07:05 Building wheels for collected packages: scipion-em-relion
2019-07-17T08:07:05   Created temporary directory: /tmp/pip-wheel-8bmr86kl
2019-07-17T08:07:05   Building wheel for scipion-em-relion (setup.py): started
2019-07-17T08:07:05   Destination directory: /tmp/pip-wheel-8bmr86kl
2019-07-17T08:07:05   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-umck2ji0/scipion-em-relion/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8bmr86kl
2019-07-17T08:07:07   running bdist_wheel
2019-07-17T08:07:07   running build
2019-07-17T08:07:07   running build_py
2019-07-17T08:07:07   creating build
2019-07-17T08:07:07   creating build/lib
2019-07-17T08:07:07   creating build/lib/relion
2019-07-17T08:07:07   copying relion/objects.py -> build/lib/relion
2019-07-17T08:07:07   copying relion/__init__.py -> build/lib/relion
2019-07-17T08:07:07   copying relion/bibtex.py -> build/lib/relion
2019-07-17T08:07:07   copying relion/constants.py -> build/lib/relion
2019-07-17T08:07:07   copying relion/wizards.py -> build/lib/relion
2019-07-17T08:07:07   creating build/lib/relion/viewers
2019-07-17T08:07:07   copying relion/viewers/__init__.py -> build/lib/relion/viewers
2019-07-17T08:07:07   copying relion/viewers/viewer_ctfrefine.py -> build/lib/relion/viewers
2019-07-17T08:07:07   copying relion/viewers/viewers.py -> build/lib/relion/viewers
2019-07-17T08:07:07   creating build/lib/relion/tests
2019-07-17T08:07:07   copying relion/tests/test_protocols_relion.py -> build/lib/relion/tests
2019-07-17T08:07:07   copying relion/tests/__init__.py -> build/lib/relion/tests
2019-07-17T08:07:07   copying relion/tests/test_workflow_relion.py -> build/lib/relion/tests
2019-07-17T08:07:07   copying relion/tests/test_workflow_relion3.py -> build/lib/relion/tests
2019-07-17T08:07:07   copying relion/tests/test_convert_relion.py -> build/lib/relion/tests
2019-07-17T08:07:07   creating build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_motioncor.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_extract_particles.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_create_mask3d.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_postprocess.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_ctf_refinement.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_preprocess.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_reconstruct.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/__init__.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_subtract.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_bayesian_polishing.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_center_averages.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_localres.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_symmetrize_volume.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_extract_particles_movies.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_classify2d.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_expand_symmetry.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_export_particles.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_sort.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_multibody.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_initialmodel.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_classify3d.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_polish.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_refine3d.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_autopick_v3.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_autopick_v2.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_export_ctf.py -> build/lib/relion/protocols
2019-07-17T08:07:07   copying relion/protocols/protocol_base.py -> build/lib/relion/protocols
2019-07-17T08:07:07   creating build/lib/relion/convert
2019-07-17T08:07:07   copying relion/convert/metadata.py -> build/lib/relion/convert
2019-07-17T08:07:07   copying relion/convert/__init__.py -> build/lib/relion/convert
2019-07-17T08:07:07   copying relion/convert/convert.py -> build/lib/relion/convert
2019-07-17T08:07:07   copying relion/convert/dataimport.py -> build/lib/relion/convert
2019-07-17T08:07:07   copying relion/relion_logo.png -> build/lib/relion
2019-07-17T08:07:07   copying relion/protocols.conf -> build/lib/relion
2019-07-17T08:07:07   installing to build/bdist.linux-armv7l/wheel
2019-07-17T08:07:07   running install
2019-07-17T08:07:07   running install_lib
2019-07-17T08:07:07   creating build/bdist.linux-armv7l
2019-07-17T08:07:07   creating build/bdist.linux-armv7l/wheel
2019-07-17T08:07:07   creating build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:07   copying build/lib/relion/objects.py -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:07   creating build/bdist.linux-armv7l/wheel/relion/viewers
2019-07-17T08:07:07   copying build/lib/relion/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2019-07-17T08:07:07   copying build/lib/relion/viewers/viewer_ctfrefine.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2019-07-17T08:07:07   copying build/lib/relion/viewers/viewers.py -> build/bdist.linux-armv7l/wheel/relion/viewers
2019-07-17T08:07:07   copying build/lib/relion/__init__.py -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:07   creating build/bdist.linux-armv7l/wheel/relion/tests
2019-07-17T08:07:07   copying build/lib/relion/tests/test_protocols_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2019-07-17T08:07:07   copying build/lib/relion/tests/__init__.py -> build/bdist.linux-armv7l/wheel/relion/tests
2019-07-17T08:07:07   copying build/lib/relion/tests/test_workflow_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2019-07-17T08:07:07   copying build/lib/relion/tests/test_workflow_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests
2019-07-17T08:07:07   copying build/lib/relion/tests/test_convert_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests
2019-07-17T08:07:07   creating build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_ctf_refinement.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:07   copying build/lib/relion/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_subtract.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_bayesian_polishing.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_center_averages.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_localres.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_symmetrize_volume.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_classify2d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_expand_symmetry.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_export_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_sort.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_multibody.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_classify3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_polish.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_refine3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_autopick_v3.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_autopick_v2.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_export_ctf.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   copying build/lib/relion/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/relion/protocols
2019-07-17T08:07:08   creating build/bdist.linux-armv7l/wheel/relion/convert
2019-07-17T08:07:08   copying build/lib/relion/convert/metadata.py -> build/bdist.linux-armv7l/wheel/relion/convert
2019-07-17T08:07:08   copying build/lib/relion/convert/__init__.py -> build/bdist.linux-armv7l/wheel/relion/convert
2019-07-17T08:07:08   copying build/lib/relion/convert/convert.py -> build/bdist.linux-armv7l/wheel/relion/convert
2019-07-17T08:07:08   copying build/lib/relion/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/relion/convert
2019-07-17T08:07:08   copying build/lib/relion/bibtex.py -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:08   copying build/lib/relion/constants.py -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:08   copying build/lib/relion/wizards.py -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:08   copying build/lib/relion/protocols.conf -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:08   copying build/lib/relion/relion_logo.png -> build/bdist.linux-armv7l/wheel/relion
2019-07-17T08:07:08   running install_egg_info
2019-07-17T08:07:08   running egg_info
2019-07-17T08:07:08   writing dependency_links to scipion_em_relion.egg-info/dependency_links.txt
2019-07-17T08:07:08   writing top-level names to scipion_em_relion.egg-info/top_level.txt
2019-07-17T08:07:08   writing scipion_em_relion.egg-info/PKG-INFO
2019-07-17T08:07:08   reading manifest file 'scipion_em_relion.egg-info/SOURCES.txt'
2019-07-17T08:07:08   reading manifest template 'MANIFEST.in'
2019-07-17T08:07:08   writing manifest file 'scipion_em_relion.egg-info/SOURCES.txt'
2019-07-17T08:07:08   Copying scipion_em_relion.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_relion-1.0.4-py3.5.egg-info
2019-07-17T08:07:08   running install_scripts
2019-07-17T08:07:08   creating build/bdist.linux-armv7l/wheel/scipion_em_relion-1.0.4.dist-info/WHEEL
2019-07-17T08:07:09   Building wheel for scipion-em-relion (setup.py): finished with status 'done'
2019-07-17T08:07:09   Stored in directory: /tmp/tmpqv9z2qel
2019-07-17T08:07:09 Successfully built scipion-em-relion
2019-07-17T08:07:09 Cleaning up...
2019-07-17T08:07:09   Removing source in /tmp/pip-wheel-umck2ji0/scipion-em-relion
2019-07-17T08:07:09 Removed build tracker '/tmp/pip-req-tracker-4p7hjxo5'