2019-07-17T08:51:11 Created temporary directory: /tmp/pip-ephem-wheel-cache-scfjzq9f
2019-07-17T08:51:11 Created temporary directory: /tmp/pip-req-tracker-l79ae8en
2019-07-17T08:51:11 Created requirements tracker '/tmp/pip-req-tracker-l79ae8en'
2019-07-17T08:51:11 Created temporary directory: /tmp/pip-wheel-j6n1x4a_
2019-07-17T08:51:11 Collecting scipion-em-eman2==1.0.4
2019-07-17T08:51:11   1 location(s) to search for versions of scipion-em-eman2:
2019-07-17T08:51:11   * https://pypi.org/simple/scipion-em-eman2/
2019-07-17T08:51:11   Getting page https://pypi.org/simple/scipion-em-eman2/
2019-07-17T08:51:11   Analyzing links from page https://pypi.org/simple/scipion-em-eman2/
2019-07-17T08:51:11     Found link https://files.pythonhosted.org/packages/a7/0f/7d43b6c07af0e5fa106f0b1fc01de1a6a99e6232a0436fcd20abffe580b5/scipion-em-eman2-1.0.0.tar.gz#sha256=4d20f96f49786911b7d7ef56ff2f7a82ec7f923f3db64d3f00a784bf647353d6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.0
2019-07-17T08:51:11     Found link https://files.pythonhosted.org/packages/80/b7/9196fe07a94d2a0fa1a791afd66470766a02cace55303598b9afd5e67b04/scipion-em-eman2-1.0.1.tar.gz#sha256=ac698992904e0677790ab735d662185742cc4902fd0fd8e246640e4e898520b7 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.1
2019-07-17T08:51:11     Found link https://files.pythonhosted.org/packages/00/80/5ab64971bf1409b607df23af77185cfe2a05a9d274f3104d83d1a21fbd62/scipion-em-eman2-1.0.2.tar.gz#sha256=6bea98c34bebbb95ddd7e16bf347aac6f6b1bd13298677ec792c0eb829f1c475 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.2
2019-07-17T08:51:11     Found link https://files.pythonhosted.org/packages/4b/76/6cb8d5d87de446dec6cc0cb8ba31c717d43f3e1b43b3299d22791a3066c9/scipion-em-eman2-1.0.3.tar.gz#sha256=1066b6c6bca5c5d36179df756e0374c3e82943b516260560129ecbffe3f8c05c (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.3
2019-07-17T08:51:11     Found link https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.4
2019-07-17T08:51:11     Found link https://files.pythonhosted.org/packages/e3/5a/2192c7e097a8db09d3ea10c795b2e220ea059882d1a918dd84aff6439d79/scipion-em-eman2-1.0.5.tar.gz#sha256=98c2eb48fd8c6ffa1d4fdf281076e63591e4106074872bb18bd53abec3fbdfd6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.5
2019-07-17T08:51:11   Using version 1.0.4 (newest of versions: 1.0.4)
2019-07-17T08:51:11   Created temporary directory: /tmp/pip-unpack-3cc1d88g
2019-07-17T08:51:11   Downloading https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz (104kB)
2019-07-17T08:51:11   Downloading from URL https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5 (from https://pypi.org/simple/scipion-em-eman2/)
2019-07-17T08:51:12   Added scipion-em-eman2==1.0.4 from https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5 to build tracker '/tmp/pip-req-tracker-l79ae8en'
2019-07-17T08:51:12     Running setup.py (path:/tmp/pip-wheel-j6n1x4a_/scipion-em-eman2/setup.py) egg_info for package scipion-em-eman2
2019-07-17T08:51:12     Running command python setup.py egg_info
2019-07-17T08:51:13     running egg_info
2019-07-17T08:51:13     creating pip-egg-info/scipion_em_eman2.egg-info
2019-07-17T08:51:13     writing top-level names to pip-egg-info/scipion_em_eman2.egg-info/top_level.txt
2019-07-17T08:51:13     writing pip-egg-info/scipion_em_eman2.egg-info/PKG-INFO
2019-07-17T08:51:13     writing dependency_links to pip-egg-info/scipion_em_eman2.egg-info/dependency_links.txt
2019-07-17T08:51:13     writing manifest file 'pip-egg-info/scipion_em_eman2.egg-info/SOURCES.txt'
2019-07-17T08:51:14     reading manifest file 'pip-egg-info/scipion_em_eman2.egg-info/SOURCES.txt'
2019-07-17T08:51:14     reading manifest template 'MANIFEST.in'
2019-07-17T08:51:14     writing manifest file 'pip-egg-info/scipion_em_eman2.egg-info/SOURCES.txt'
2019-07-17T08:51:14   Source in /tmp/pip-wheel-j6n1x4a_/scipion-em-eman2 has version 1.0.4, which satisfies requirement scipion-em-eman2==1.0.4 from https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5
2019-07-17T08:51:14   Removed scipion-em-eman2==1.0.4 from https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5 from build tracker '/tmp/pip-req-tracker-l79ae8en'
2019-07-17T08:51:14 Building wheels for collected packages: scipion-em-eman2
2019-07-17T08:51:14   Created temporary directory: /tmp/pip-wheel-ftos7o6e
2019-07-17T08:51:14   Building wheel for scipion-em-eman2 (setup.py): started
2019-07-17T08:51:14   Destination directory: /tmp/pip-wheel-ftos7o6e
2019-07-17T08:51:14   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-j6n1x4a_/scipion-em-eman2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ftos7o6e
2019-07-17T08:51:16   running bdist_wheel
2019-07-17T08:51:16   running build
2019-07-17T08:51:16   running build_py
2019-07-17T08:51:16   creating build
2019-07-17T08:51:16   creating build/lib
2019-07-17T08:51:16   creating build/lib/eman2
2019-07-17T08:51:16   copying eman2/bibtex.py -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/constants.py -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/viewers.py -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/__init__.py -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/e2ih.py -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/e2converter.py -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/wizards.py -> build/lib/eman2
2019-07-17T08:51:16   creating build/lib/eman2/tests
2019-07-17T08:51:16   copying eman2/tests/__init__.py -> build/lib/eman2/tests
2019-07-17T08:51:16   copying eman2/tests/test_protocols_eman.py -> build/lib/eman2/tests
2019-07-17T08:51:16   creating build/lib/eman2/convert
2019-07-17T08:51:16   copying eman2/convert/dataimport.py -> build/lib/eman2/convert
2019-07-17T08:51:16   copying eman2/convert/__init__.py -> build/lib/eman2/convert
2019-07-17T08:51:16   copying eman2/convert/convert.py -> build/lib/eman2/convert
2019-07-17T08:51:16   creating build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_autopick_sparx.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_autopick_boxer.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_refineasy.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_refine2d_bispec.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_ctf.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_reconstruct.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/__init__.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_boxing.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_tiltvalidate.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_initialmodel.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/protocols/protocol_refine2d.py -> build/lib/eman2/protocols
2019-07-17T08:51:16   copying eman2/eman2_logo.png -> build/lib/eman2
2019-07-17T08:51:16   copying eman2/protocols.conf -> build/lib/eman2
2019-07-17T08:51:16   installing to build/bdist.linux-armv7l/wheel
2019-07-17T08:51:16   running install
2019-07-17T08:51:16   running install_lib
2019-07-17T08:51:16   creating build/bdist.linux-armv7l
2019-07-17T08:51:16   creating build/bdist.linux-armv7l/wheel
2019-07-17T08:51:16   creating build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   creating build/bdist.linux-armv7l/wheel/eman2/tests
2019-07-17T08:51:16   copying build/lib/eman2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/tests
2019-07-17T08:51:16   copying build/lib/eman2/tests/test_protocols_eman.py -> build/bdist.linux-armv7l/wheel/eman2/tests
2019-07-17T08:51:16   copying build/lib/eman2/bibtex.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   copying build/lib/eman2/constants.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   copying build/lib/eman2/eman2_logo.png -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   copying build/lib/eman2/viewers.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   copying build/lib/eman2/protocols.conf -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   copying build/lib/eman2/__init__.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   copying build/lib/eman2/e2ih.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:16   creating build/bdist.linux-armv7l/wheel/eman2/convert
2019-07-17T08:51:16   copying build/lib/eman2/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/eman2/convert
2019-07-17T08:51:17   copying build/lib/eman2/convert/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/convert
2019-07-17T08:51:17   copying build/lib/eman2/convert/convert.py -> build/bdist.linux-armv7l/wheel/eman2/convert
2019-07-17T08:51:17   creating build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_autopick_sparx.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_autopick_boxer.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_refineasy.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_refine2d_bispec.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_ctf.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_boxing.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_tiltvalidate.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/protocols/protocol_refine2d.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2019-07-17T08:51:17   copying build/lib/eman2/e2converter.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:17   copying build/lib/eman2/wizards.py -> build/bdist.linux-armv7l/wheel/eman2
2019-07-17T08:51:17   running install_egg_info
2019-07-17T08:51:17   running egg_info
2019-07-17T08:51:17   writing scipion_em_eman2.egg-info/PKG-INFO
2019-07-17T08:51:17   writing top-level names to scipion_em_eman2.egg-info/top_level.txt
2019-07-17T08:51:17   writing dependency_links to scipion_em_eman2.egg-info/dependency_links.txt
2019-07-17T08:51:17   reading manifest file 'scipion_em_eman2.egg-info/SOURCES.txt'
2019-07-17T08:51:17   reading manifest template 'MANIFEST.in'
2019-07-17T08:51:17   writing manifest file 'scipion_em_eman2.egg-info/SOURCES.txt'
2019-07-17T08:51:17   Copying scipion_em_eman2.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_eman2-1.0.4-py3.5.egg-info
2019-07-17T08:51:17   running install_scripts
2019-07-17T08:51:17   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2019-07-17T08:51:17   creating build/bdist.linux-armv7l/wheel/scipion_em_eman2-1.0.4.dist-info/WHEEL
2019-07-17T08:51:17   creating '/tmp/pip-wheel-ftos7o6e/scipion_em_eman2-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-17T08:51:17   adding 'eman2/__init__.py'
2019-07-17T08:51:17   adding 'eman2/bibtex.py'
2019-07-17T08:51:17   adding 'eman2/constants.py'
2019-07-17T08:51:17   adding 'eman2/e2converter.py'
2019-07-17T08:51:17   adding 'eman2/e2ih.py'
2019-07-17T08:51:17   adding 'eman2/eman2_logo.png'
2019-07-17T08:51:17   adding 'eman2/protocols.conf'
2019-07-17T08:51:17   adding 'eman2/viewers.py'
2019-07-17T08:51:17   adding 'eman2/wizards.py'
2019-07-17T08:51:17   adding 'eman2/convert/__init__.py'
2019-07-17T08:51:17   adding 'eman2/convert/convert.py'
2019-07-17T08:51:17   adding 'eman2/convert/dataimport.py'
2019-07-17T08:51:17   adding 'eman2/protocols/__init__.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_autopick_boxer.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_autopick_sparx.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_boxing.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_ctf.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_initialmodel.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_reconstruct.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_refine2d.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_refine2d_bispec.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_refineasy.py'
2019-07-17T08:51:17   adding 'eman2/protocols/protocol_tiltvalidate.py'
2019-07-17T08:51:17   adding 'eman2/tests/__init__.py'
2019-07-17T08:51:17   adding 'eman2/tests/test_protocols_eman.py'
2019-07-17T08:51:17   adding 'scipion_em_eman2-1.0.4.dist-info/LICENSE'
2019-07-17T08:51:17   adding 'scipion_em_eman2-1.0.4.dist-info/METADATA'
2019-07-17T08:51:17   adding 'scipion_em_eman2-1.0.4.dist-info/WHEEL'
2019-07-17T08:51:17   adding 'scipion_em_eman2-1.0.4.dist-info/top_level.txt'
2019-07-17T08:51:17   adding 'scipion_em_eman2-1.0.4.dist-info/RECORD'
2019-07-17T08:51:17   removing build/bdist.linux-armv7l/wheel
2019-07-17T08:51:17   Building wheel for scipion-em-eman2 (setup.py): finished with status 'done'
2019-07-17T08:51:17   Stored in directory: /tmp/tmpaax_reh2
2019-07-17T08:51:17 Successfully built scipion-em-eman2
2019-07-17T08:51:17 Cleaning up...
2019-07-17T08:51:17   Removing source in /tmp/pip-wheel-j6n1x4a_/scipion-em-eman2
2019-07-17T08:51:17 Removed build tracker '/tmp/pip-req-tracker-l79ae8en'