2019-07-18T02:14:12 Created temporary directory: /tmp/pip-ephem-wheel-cache-850cg6e7 2019-07-18T02:14:12 Created temporary directory: /tmp/pip-req-tracker-0jfyvg1v 2019-07-18T02:14:12 Created requirements tracker '/tmp/pip-req-tracker-0jfyvg1v' 2019-07-18T02:14:12 Created temporary directory: /tmp/pip-wheel-ig3x4_gp 2019-07-18T02:14:12 Collecting distruct==0.0.13 2019-07-18T02:14:12 1 location(s) to search for versions of distruct: 2019-07-18T02:14:12 * https://pypi.org/simple/distruct/ 2019-07-18T02:14:12 Getting page https://pypi.org/simple/distruct/ 2019-07-18T02:14:12 Analyzing links from page https://pypi.org/simple/distruct/ 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/a7/95/72eab7466e21395889f3aea09c08bf9c02858a65fcd687c58f7292b1c96f/distruct-0.0.4.tar.gz#sha256=ebec318dd5fc1b1ec01dfc78f90edb3dd6f63b3769e65a29503a6e3fb2133138 (from https://pypi.org/simple/distruct/), version: 0.0.4 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/0b/87/75d8d3b9486ceec01e5e13c21ae97ad1fadc0c922b448d26fddbb5dfd75f/distruct-0.0.5.tar.gz#sha256=d9456e8fff1d6eee4149753eb08a521e17eac7b719e8a916acbd7a310801a4de (from https://pypi.org/simple/distruct/), version: 0.0.5 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/8b/c9/f880c839b8666ab8bca9e235aded9167909467e55a56edd263f7713f09e2/distruct-0.0.6.tar.gz#sha256=47932c2af3a91b00ebe3b3a06e402040658be86dd0a58040eedd7758a8ea13dd (from https://pypi.org/simple/distruct/), version: 0.0.6 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/dc/5e/2b1348497dbf152b78142e0ab5c19d3f972fcc9d5b949da3973697d20054/distruct-0.0.7.tar.gz#sha256=9a050348e4e8e34bba456474ef9493d0a645c03b8f6363e2b4010680187bd11a (from https://pypi.org/simple/distruct/), version: 0.0.7 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/16/13/97fc8289ebe37b60764f2a219700b26f08bc0ca71ec41504288ea6daa4ac/distruct-0.0.8.tar.gz#sha256=46a4c0a23c0c6fa817db31550ac88d285734436a6958cb27f40535247eee2afe (from https://pypi.org/simple/distruct/), version: 0.0.8 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/53/0a/5f0f1d613fd828fcd30e62b63523da76defcb55858d9e22b27c83ef34804/distruct-0.0.9.tar.gz#sha256=32483c2d354505d1da62012bc717285ade70f4e18c642c9f0e027a59fc97fc2e (from https://pypi.org/simple/distruct/), version: 0.0.9 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/37/c7/5f5c8071c59082d169513424a8e7613a860e3f76e093f5eaffc9d7003977/distruct-0.0.10.tar.gz#sha256=ea38e769782e8b7cc71d91780f49c751b676e63530a15c4bd35456ae2f4772e5 (from https://pypi.org/simple/distruct/), version: 0.0.10 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/24/8a/27def628c66dad41f5b7fa81842a008af660fcf4f988b0fe2e42f6e29271/distruct-0.0.11.tar.gz#sha256=9e03bf2ff762367f9a6f55ffbb3b47478c4f20150e095ad0474e2f3cac2b6a22 (from https://pypi.org/simple/distruct/), version: 0.0.11 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/cb/fe/4ac57deaea945356387275232e318ef3cc172e8cbba5fe1d1338335d5f67/distruct-0.0.12.tar.gz#sha256=171fe06a9dbaf82907ebf307196d074a474fe45df992a0f1fd9c38b987382ce8 (from https://pypi.org/simple/distruct/), version: 0.0.12 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/30/37/86c98496554eb7142b1821370db649fb70d801d11990d3957203d7e9b6f6/distruct-0.0.13.tar.gz#sha256=d6bb74fe11d525ef7d7279ad4d59eb4cb68aa1227b4875fd574d08734657612e (from https://pypi.org/simple/distruct/), version: 0.0.13 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/16/20/3cf09fbf426363d4e8b89611fe4aa30f26cd135ae3ad38c1d22b858e2924/distruct-0.0.14.tar.gz#sha256=d1383d3924a6cf8d6b554d5e1f2330c7ca4d7c74e8cf7bb8a566d1810ed089d6 (from https://pypi.org/simple/distruct/), version: 0.0.14 2019-07-18T02:14:12 Found link https://files.pythonhosted.org/packages/50/8c/3d41ec1431a2c9127a3dbca20c77499dd803ff30038c68e7e6285d33e4e8/distruct-1.0.0.tar.gz#sha256=61df634fe29c2b193a8a8b0155be06d07df0c4aaf36992d69d76bf67a3e7c9a1 (from https://pypi.org/simple/distruct/), version: 1.0.0 2019-07-18T02:14:12 Using version 0.0.13 (newest of versions: 0.0.13) 2019-07-18T02:14:12 Created temporary directory: /tmp/pip-unpack-6c3od5z5 2019-07-18T02:14:12 Downloading https://files.pythonhosted.org/packages/30/37/86c98496554eb7142b1821370db649fb70d801d11990d3957203d7e9b6f6/distruct-0.0.13.tar.gz (77kB) 2019-07-18T02:14:12 Downloading from URL https://files.pythonhosted.org/packages/30/37/86c98496554eb7142b1821370db649fb70d801d11990d3957203d7e9b6f6/distruct-0.0.13.tar.gz#sha256=d6bb74fe11d525ef7d7279ad4d59eb4cb68aa1227b4875fd574d08734657612e (from https://pypi.org/simple/distruct/) 2019-07-18T02:14:12 Added distruct==0.0.13 from https://files.pythonhosted.org/packages/30/37/86c98496554eb7142b1821370db649fb70d801d11990d3957203d7e9b6f6/distruct-0.0.13.tar.gz#sha256=d6bb74fe11d525ef7d7279ad4d59eb4cb68aa1227b4875fd574d08734657612e to build tracker '/tmp/pip-req-tracker-0jfyvg1v' 2019-07-18T02:14:12 Running setup.py (path:/tmp/pip-wheel-ig3x4_gp/distruct/setup.py) egg_info for package distruct 2019-07-18T02:14:12 Running command python setup.py egg_info 2019-07-18T02:14:14 running egg_info 2019-07-18T02:14:14 creating pip-egg-info/distruct.egg-info 2019-07-18T02:14:14 writing pip-egg-info/distruct.egg-info/PKG-INFO 2019-07-18T02:14:14 writing dependency_links to pip-egg-info/distruct.egg-info/dependency_links.txt 2019-07-18T02:14:14 writing requirements to pip-egg-info/distruct.egg-info/requires.txt 2019-07-18T02:14:14 writing top-level names to pip-egg-info/distruct.egg-info/top_level.txt 2019-07-18T02:14:14 writing manifest file 'pip-egg-info/distruct.egg-info/SOURCES.txt' 2019-07-18T02:14:15 reading manifest file 'pip-egg-info/distruct.egg-info/SOURCES.txt' 2019-07-18T02:14:15 reading manifest template 'MANIFEST.in' 2019-07-18T02:14:15 writing manifest file 'pip-egg-info/distruct.egg-info/SOURCES.txt' 2019-07-18T02:14:15 Source in /tmp/pip-wheel-ig3x4_gp/distruct has version 0.0.13, which satisfies requirement distruct==0.0.13 from https://files.pythonhosted.org/packages/30/37/86c98496554eb7142b1821370db649fb70d801d11990d3957203d7e9b6f6/distruct-0.0.13.tar.gz#sha256=d6bb74fe11d525ef7d7279ad4d59eb4cb68aa1227b4875fd574d08734657612e 2019-07-18T02:14:15 Removed distruct==0.0.13 from https://files.pythonhosted.org/packages/30/37/86c98496554eb7142b1821370db649fb70d801d11990d3957203d7e9b6f6/distruct-0.0.13.tar.gz#sha256=d6bb74fe11d525ef7d7279ad4d59eb4cb68aa1227b4875fd574d08734657612e from build tracker '/tmp/pip-req-tracker-0jfyvg1v' 2019-07-18T02:14:15 Building wheels for collected packages: distruct 2019-07-18T02:14:15 Created temporary directory: /tmp/pip-wheel-lsbkq23j 2019-07-18T02:14:15 Building wheel for distruct (setup.py): started 2019-07-18T02:14:15 Destination directory: /tmp/pip-wheel-lsbkq23j 2019-07-18T02:14:15 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ig3x4_gp/distruct/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lsbkq23j 2019-07-18T02:14:17 running bdist_wheel 2019-07-18T02:14:17 running build 2019-07-18T02:14:17 running build_py 2019-07-18T02:14:17 creating build 2019-07-18T02:14:17 creating build/lib.linux-armv7l-3.7 2019-07-18T02:14:17 creating build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 copying distruct/config.py -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 copying distruct/topologydb.py -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 copying distruct/__init__.py -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 copying distruct/data.py -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 copying distruct/superimposer.py -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 copying distruct/fileio.py -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:17 creating build/lib.linux-armv7l-3.7/distruct/tools 2019-07-18T02:14:17 copying distruct/tools/pdb.py -> build/lib.linux-armv7l-3.7/distruct/tools 2019-07-18T02:14:17 copying distruct/tools/__init__.py -> build/lib.linux-armv7l-3.7/distruct/tools 2019-07-18T02:14:17 copying distruct/tools/math.py -> build/lib.linux-armv7l-3.7/distruct/tools 2019-07-18T02:14:17 copying distruct/tools/ffparsergmx.py -> build/lib.linux-armv7l-3.7/distruct/tools 2019-07-18T02:14:17 running egg_info 2019-07-18T02:14:17 writing distruct.egg-info/PKG-INFO 2019-07-18T02:14:17 writing dependency_links to distruct.egg-info/dependency_links.txt 2019-07-18T02:14:17 writing requirements to distruct.egg-info/requires.txt 2019-07-18T02:14:17 writing top-level names to distruct.egg-info/top_level.txt 2019-07-18T02:14:18 reading manifest file 'distruct.egg-info/SOURCES.txt' 2019-07-18T02:14:18 reading manifest template 'MANIFEST.in' 2019-07-18T02:14:18 writing manifest file 'distruct.egg-info/SOURCES.txt' 2019-07-18T02:14:18 copying distruct/_diSTruct.pyx -> build/lib.linux-armv7l-3.7/distruct 2019-07-18T02:14:18 creating build/lib.linux-armv7l-3.7/distruct/share 2019-07-18T02:14:18 copying distruct/share/1ptq.dist -> build/lib.linux-armv7l-3.7/distruct/share 2019-07-18T02:14:18 copying distruct/share/amber99sb-ildn.xml -> build/lib.linux-armv7l-3.7/distruct/share 2019-07-18T02:14:18 copying distruct/share/generate.py -> build/lib.linux-armv7l-3.7/distruct/share 2019-07-18T02:14:18 creating build/lib.linux-armv7l-3.7/distruct/src 2019-07-18T02:14:18 copying distruct/src/BioMaxentStress.cpp -> build/lib.linux-armv7l-3.7/distruct/src 2019-07-18T02:14:18 copying distruct/src/BioMaxentStress.h -> build/lib.linux-armv7l-3.7/distruct/src 2019-07-18T02:14:18 copying distruct/src/DuckingWrapper.h -> build/lib.linux-armv7l-3.7/distruct/src 2019-07-18T02:14:18 creating build/lib.linux-armv7l-3.7/distruct/src/aux 2019-07-18T02:14:18 copying distruct/src/aux/sig.h -> build/lib.linux-armv7l-3.7/distruct/src/aux 2019-07-18T02:14:18 creating build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_Distructure.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_MaxEntStress.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_distruct.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_ffparsergmx.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_fileio.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_pdb.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 copying distruct/tests/test_superimposer.py -> build/lib.linux-armv7l-3.7/distruct/tests 2019-07-18T02:14:18 running build_ext 2019-07-18T02:14:18 cythoning distruct/_diSTruct.pyx to distruct/_diSTruct.cpp 2019-07-18T02:14:19 /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ig3x4_gp/distruct/distruct/_diSTruct.pyx 2019-07-18T02:14:19 tree = Parsing.p_module(s, pxd, full_module_name) 2019-07-18T02:14:22 building '_diSTruct' extension 2019-07-18T02:14:22 creating build/temp.linux-armv7l-3.7 2019-07-18T02:14:22 creating build/temp.linux-armv7l-3.7/distruct 2019-07-18T02:14:22 creating build/temp.linux-armv7l-3.7/distruct/src 2019-07-18T02:14:22 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/tmpawj76eso/networkit/cpp/ -Idistruct/src/ -I/usr/include/python3.7m -c distruct/src/BioMaxentStress.cpp -o build/temp.linux-armv7l-3.7/distruct/src/BioMaxentStress.o -fopenmp -std=c++11 2019-07-18T02:14:22 In file included from distruct/src/BioMaxentStress.cpp:18: 2019-07-18T02:14:22 distruct/src/BioMaxentStress.h:19:10: fatal error: viz/GraphLayoutAlgorithm.h: No such file or directory 2019-07-18T02:14:22 #include 2019-07-18T02:14:22 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2019-07-18T02:14:22 compilation terminated. 2019-07-18T02:14:22 error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1 2019-07-18T02:14:22 Building wheel for distruct (setup.py): finished with status 'error' 2019-07-18T02:14:22 ERROR: Failed building wheel for distruct 2019-07-18T02:14:22 Running setup.py clean for distruct 2019-07-18T02:14:22 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-ig3x4_gp/distruct/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2019-07-18T02:14:24 running clean 2019-07-18T02:14:24 removing 'build/temp.linux-armv7l-3.7' (and everything under it) 2019-07-18T02:14:24 removing 'build/lib.linux-armv7l-3.7' (and everything under it) 2019-07-18T02:14:24 'build/bdist.linux-armv7l' does not exist -- can't clean it 2019-07-18T02:14:24 'build/scripts-3.7' does not exist -- can't clean it 2019-07-18T02:14:24 removing 'build' 2019-07-18T02:14:24 Failed to build distruct 2019-07-18T02:14:24 Cleaning up... 2019-07-18T02:14:24 Removing source in /tmp/pip-wheel-ig3x4_gp/distruct 2019-07-18T02:14:24 Removed build tracker '/tmp/pip-req-tracker-0jfyvg1v' 2019-07-18T02:14:24 ERROR: Failed to build one or more wheels 2019-07-18T02:14:24 Exception information: 2019-07-18T02:14:24 Traceback (most recent call last): 2019-07-18T02:14:24 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 178, in main 2019-07-18T02:14:24 status = self.run(options, args) 2019-07-18T02:14:24 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2019-07-18T02:14:24 "Failed to build one or more wheels" 2019-07-18T02:14:24 pip._internal.exceptions.CommandError: Failed to build one or more wheels