2019-07-24T09:45:01 Created temporary directory: /tmp/pip-ephem-wheel-cache-zl3uqg23
2019-07-24T09:45:01 Created temporary directory: /tmp/pip-req-tracker-rdne7z3e
2019-07-24T09:45:01 Created requirements tracker '/tmp/pip-req-tracker-rdne7z3e'
2019-07-24T09:45:01 Created temporary directory: /tmp/pip-wheel-nwbs6y_k
2019-07-24T09:45:01 Collecting AdaptivePELE==1.6.2
2019-07-24T09:45:01   1 location(s) to search for versions of AdaptivePELE:
2019-07-24T09:45:01   * https://pypi.org/simple/adaptivepele/
2019-07-24T09:45:01   Getting page https://pypi.org/simple/adaptivepele/
2019-07-24T09:45:01   Analyzing links from page https://pypi.org/simple/adaptivepele/
2019-07-24T09:45:01     Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2019-07-24T09:45:01     Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2019-07-24T09:45:01     Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2019-07-24T09:45:01     Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2019-07-24T09:45:01   Using version 1.6.2 (newest of versions: 1.6.2)
2019-07-24T09:45:01   Created temporary directory: /tmp/pip-unpack-4au51rkm
2019-07-24T09:45:02   Downloading https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz (4.5MB)
2019-07-24T09:45:02   Downloading from URL https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/)
2019-07-24T09:45:04   Added AdaptivePELE==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 to build tracker '/tmp/pip-req-tracker-rdne7z3e'
2019-07-24T09:45:04     Running setup.py (path:/tmp/pip-wheel-nwbs6y_k/AdaptivePELE/setup.py) egg_info for package AdaptivePELE
2019-07-24T09:45:04     Running command python setup.py egg_info
2019-07-24T09:45:07     Warning: 'classifiers' should be a list, got type 'tuple'
2019-07-24T09:45:07     running egg_info
2019-07-24T09:45:07     creating pip-egg-info/AdaptivePELE.egg-info
2019-07-24T09:45:07     writing pip-egg-info/AdaptivePELE.egg-info/PKG-INFO
2019-07-24T09:45:07     writing dependency_links to pip-egg-info/AdaptivePELE.egg-info/dependency_links.txt
2019-07-24T09:45:07     writing requirements to pip-egg-info/AdaptivePELE.egg-info/requires.txt
2019-07-24T09:45:07     writing top-level names to pip-egg-info/AdaptivePELE.egg-info/top_level.txt
2019-07-24T09:45:07     writing manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
2019-07-24T09:45:07     reading manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
2019-07-24T09:45:07     reading manifest template 'MANIFEST.in'
2019-07-24T09:45:07     writing manifest file 'pip-egg-info/AdaptivePELE.egg-info/SOURCES.txt'
2019-07-24T09:45:07   Source in /tmp/pip-wheel-nwbs6y_k/AdaptivePELE has version 1.6.2, which satisfies requirement AdaptivePELE==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5
2019-07-24T09:45:07   Removed AdaptivePELE==1.6.2 from https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 from build tracker '/tmp/pip-req-tracker-rdne7z3e'
2019-07-24T09:45:07 Building wheels for collected packages: AdaptivePELE
2019-07-24T09:45:07   Created temporary directory: /tmp/pip-wheel-awdc1o58
2019-07-24T09:45:07   Building wheel for AdaptivePELE (setup.py): started
2019-07-24T09:45:07   Destination directory: /tmp/pip-wheel-awdc1o58
2019-07-24T09:45:07   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-nwbs6y_k/AdaptivePELE/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-awdc1o58
2019-07-24T09:45:09   Warning: 'classifiers' should be a list, got type 'tuple'
2019-07-24T09:45:09   running bdist_wheel
2019-07-24T09:45:09   running build
2019-07-24T09:45:09   running build_py
2019-07-24T09:45:09   creating build
2019-07-24T09:45:09   creating build/lib.linux-armv7l-3.7
2019-07-24T09:45:09   creating build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:09   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:09   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:09   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:09   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:09   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:09   creating build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:09   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-24T09:45:10   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-24T09:45:10   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-24T09:45:10   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-24T09:45:10   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-24T09:45:10   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-24T09:45:10   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-24T09:45:10   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-24T09:45:10   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-24T09:45:10   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-24T09:45:10   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-24T09:45:10   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-24T09:45:10   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-24T09:45:10   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-24T09:45:10   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-24T09:45:10   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-24T09:45:10   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-24T09:45:10   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-24T09:45:10   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-24T09:45:10   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-24T09:45:10   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-24T09:45:10   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-24T09:45:10   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-24T09:45:10   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2019-07-24T09:45:10   creating build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2019-07-24T09:45:10   running build_ext
2019-07-24T09:45:10   skipping 'AdaptivePELE/atomset/atomset.c' Cython extension (up-to-date)
2019-07-24T09:45:10   building 'AdaptivePELE.atomset.atomset' extension
2019-07-24T09:45:10   creating build/temp.linux-armv7l-3.7
2019-07-24T09:45:10   creating build/temp.linux-armv7l-3.7/AdaptivePELE
2019-07-24T09:45:10   creating build/temp.linux-armv7l-3.7/AdaptivePELE/atomset
2019-07-24T09:45:10   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.o
2019-07-24T09:45:11   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-24T09:45:11                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-24T09:45:11                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-24T09:45:11                    from AdaptivePELE/atomset/atomset.c:610:
2019-07-24T09:45:11   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-24T09:45:11    #warning "Using deprecated NumPy API, disable it with " \
2019-07-24T09:45:11     ^~~~~~~
2019-07-24T09:47:02   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so
2019-07-24T09:47:02   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2019-07-24T09:47:02   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2019-07-24T09:47:02   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2019-07-24T09:47:03   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-24T09:47:03                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-24T09:47:03                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-24T09:47:03                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2019-07-24T09:47:03   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-24T09:47:03    #warning "Using deprecated NumPy API, disable it with " \
2019-07-24T09:47:03     ^~~~~~~
2019-07-24T09:47:26   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so
2019-07-24T09:47:26   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2019-07-24T09:47:26   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2019-07-24T09:47:26   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.o
2019-07-24T09:47:26   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-24T09:47:26                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-24T09:47:26                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-24T09:47:26                    from AdaptivePELE/atomset/RMSDCalculator.c:610:
2019-07-24T09:47:26   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-24T09:47:26    #warning "Using deprecated NumPy API, disable it with " \
2019-07-24T09:47:26     ^~~~~~~
2019-07-24T09:47:41   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.cpython-37m-arm-linux-gnueabihf.so
2019-07-24T09:47:41   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2019-07-24T09:47:41   building 'AdaptivePELE.freeEnergies.utils' extension
2019-07-24T09:47:41   creating build/temp.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2019-07-24T09:47:41   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.o
2019-07-24T09:47:41   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2019-07-24T09:47:41                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2019-07-24T09:47:41                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2019-07-24T09:47:41                    from AdaptivePELE/freeEnergies/utils.c:610:
2019-07-24T09:47:41   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2019-07-24T09:47:41    #warning "Using deprecated NumPy API, disable it with " \
2019-07-24T09:47:41     ^~~~~~~
2019-07-24T09:48:10   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.cpython-37m-arm-linux-gnueabihf.so
2019-07-24T09:48:10   installing to build/bdist.linux-armv7l/wheel
2019-07-24T09:48:10   running install
2019-07-24T09:48:10   running install_lib
2019-07-24T09:48:10   creating build/bdist.linux-armv7l
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2019-07-24T09:48:10   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/selectOnPlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/simple_postprocessing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:10   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/crossValidationClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/standarize_MD_energies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/analysis_utils.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/generateBox.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2019-07-24T09:48:11   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2019-07-24T09:48:11   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2019-07-24T09:48:11   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2019-07-24T09:48:11   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/generate_topology_object.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2019-07-24T09:48:11   running install_egg_info
2019-07-24T09:48:11   running egg_info
2019-07-24T09:48:11   writing AdaptivePELE.egg-info/PKG-INFO
2019-07-24T09:48:11   writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
2019-07-24T09:48:11   writing requirements to AdaptivePELE.egg-info/requires.txt
2019-07-24T09:48:11   writing top-level names to AdaptivePELE.egg-info/top_level.txt
2019-07-24T09:48:11   reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2019-07-24T09:48:11   reading manifest template 'MANIFEST.in'
2019-07-24T09:48:11   writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2019-07-24T09:48:11   Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.6.2-py3.7.egg-info
2019-07-24T09:48:11   running install_scripts
2019-07-24T09:48:11   creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.6.2.dist-info/WHEEL
2019-07-24T09:48:11   creating '/tmp/pip-wheel-awdc1o58/AdaptivePELE-1.6.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-07-24T09:48:11   adding 'AdaptivePELE/__init__.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/adaptiveSampling.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/automateRoundsAdaptive.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/makeRelease.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/runAllTests.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/__init__.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/addRejectedSteps.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/analyse.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/analyseClustering.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/analysis_utils.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/autoCorrelation.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/bestStructs.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/calculateSASAvalues.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/clusterAdaptiveRun.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/clusters_lagtime_grid.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/compareClustering.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/convertTrajectory.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/correctRMSD.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/count_clusters.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/crossValidationClustering.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/dehidratate_and_align.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/extract_ligand_traj.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/filter_by_radius.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/findfirstbindingevent.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/foldersFirstBindingEvent.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/generateBox.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/histCM.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/identifyClusterSnapshot.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/interactivePlot.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/makePNGs.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/networkCM.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/numberOfClusters.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/pathwayRMSD.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/plot3DNetwork.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/plotAdaptive.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/plotRMSF.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/plotSpawningClusters.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/selectOnPlot.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/simple_postprocessing.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/splitTrajectory.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/standarize_MD_energies.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/trajectory_processing.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/writeClusteringStructures.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/writeNetworkFiles.py'
2019-07-24T09:48:11   adding 'AdaptivePELE/analysis/writeTrajToSnapshot.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/atomset/RMSDCalculator.cpython-37m-arm-linux-gnueabihf.so'
2019-07-24T09:48:12   adding 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so'
2019-07-24T09:48:12   adding 'AdaptivePELE/atomset/__init__.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so'
2019-07-24T09:48:12   adding 'AdaptivePELE/atomset/setup.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/clustering/__init__.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/clustering/clustering.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/clustering/clusteringTypes.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/clustering/thresholdcalculator.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/clustering/thresholdcalculatortypes.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/constants/__init__.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/constants/blockNames.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/constants/constants.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/constants/symmetries.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/__init__.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/calculateDGiterations.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/checkDetailedBalance.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/cluster.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/computeDGGrid.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/computeDeltaG.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/estimate.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/estimateDG.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/estimateDGAdaptive.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/extendTrajectories.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/extractCoords.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/getRepresentativeStructures.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/ownBuildMSM.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/prepareMSMFolders.py'
2019-07-24T09:48:12   adding 'AdaptivePELE/freeEnergies/runMarkovChainModel.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/freeEnergies/utils.cpython-37m-arm-linux-gnueabihf.so'
2019-07-24T09:48:13   adding 'AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/simulation/__init__.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/simulation/openmm_simulations.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/simulation/simulationTypes.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/simulation/simulationrunner.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/spawning/__init__.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/spawning/densitycalculator.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/spawning/densitycalculatortypes.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/spawning/spawning.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/spawning/spawningTypes.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/__init__.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testAdaptiveSampling.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testAtomset.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testClustering.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testDensityCalculator.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testMD.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testMD_CUDA.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testReporter.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testSpawning.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/tests/testThresholdcalculator.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/utilities/PDBLoader.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/utilities/__init__.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/utilities/clusteringUtilities.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/utilities/generate_topology_object.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/utilities/synchronization.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/utilities/utilities.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/validator/__init__.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/validator/controlFileValidator.py'
2019-07-24T09:48:13   adding 'AdaptivePELE/validator/validatorBlockNames.py'
2019-07-24T09:48:13   adding 'AdaptivePELE-1.6.2.dist-info/METADATA'
2019-07-24T09:48:13   adding 'AdaptivePELE-1.6.2.dist-info/WHEEL'
2019-07-24T09:48:13   adding 'AdaptivePELE-1.6.2.dist-info/top_level.txt'
2019-07-24T09:48:13   adding 'AdaptivePELE-1.6.2.dist-info/RECORD'
2019-07-24T09:48:13   removing build/bdist.linux-armv7l/wheel
2019-07-24T09:48:13   Building wheel for AdaptivePELE (setup.py): finished with status 'done'
2019-07-24T09:48:13   Stored in directory: /tmp/tmp0gd8ppb5
2019-07-24T09:48:13 Successfully built AdaptivePELE
2019-07-24T09:48:13 Cleaning up...
2019-07-24T09:48:13   Removing source in /tmp/pip-wheel-nwbs6y_k/AdaptivePELE
2019-07-24T09:48:13 Removed build tracker '/tmp/pip-req-tracker-rdne7z3e'