Created temporary directory: /tmp/pip-ephem-wheel-cache-wx2g5ab0 Created temporary directory: /tmp/pip-req-tracker-cjxrawfn Created requirements tracker '/tmp/pip-req-tracker-cjxrawfn' Created temporary directory: /tmp/pip-wheel-42ew4sua Collecting gvc4bam==1.0 1 location(s) to search for versions of gvc4bam: * https://pypi.org/simple/gvc4bam/ Getting page https://pypi.org/simple/gvc4bam/ Analyzing links from page https://pypi.org/simple/gvc4bam/ Found link https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 (from https://pypi.org/simple/gvc4bam/), version: 1.0 Using version 1.0 (newest of versions: 1.0) Created temporary directory: /tmp/pip-unpack-64_j4pqx Downloading https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz Downloading from URL https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 (from https://pypi.org/simple/gvc4bam/) Added gvc4bam==1.0 from https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 to build tracker '/tmp/pip-req-tracker-cjxrawfn' Running setup.py (path:/tmp/pip-wheel-42ew4sua/gvc4bam/setup.py) egg_info for package gvc4bam Running command python setup.py egg_info running egg_info creating pip-egg-info/gvc4bam.egg-info writing top-level names to pip-egg-info/gvc4bam.egg-info/top_level.txt writing pip-egg-info/gvc4bam.egg-info/PKG-INFO writing requirements to pip-egg-info/gvc4bam.egg-info/requires.txt writing dependency_links to pip-egg-info/gvc4bam.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-42ew4sua/gvc4bam has version 1.0, which satisfies requirement gvc4bam==1.0 from https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 Removed gvc4bam==1.0 from https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 from build tracker '/tmp/pip-req-tracker-cjxrawfn' Building wheels for collected packages: gvc4bam Created temporary directory: /tmp/pip-wheel-b70ih2lf Running setup.py bdist_wheel for gvc4bam: started Destination directory: /tmp/pip-wheel-b70ih2lf Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-42ew4sua/gvc4bam/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-b70ih2lf running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/gvc4bam copying gvc4bam/tb_bam_choice.py -> build/lib/gvc4bam copying gvc4bam/gvc_pipeline.py -> build/lib/gvc4bam copying gvc4bam/cnv.py -> build/lib/gvc4bam copying gvc4bam/bam_load_check.py -> build/lib/gvc4bam copying gvc4bam/__init__.py -> build/lib/gvc4bam copying gvc4bam/gvc_vcf_pipeline.py -> build/lib/gvc4bam copying gvc4bam/variant_interface.py -> build/lib/gvc4bam copying gvc4bam/predict.py -> build/lib/gvc4bam copying gvc4bam/bed_check_sort_reg.py -> build/lib/gvc4bam copying gvc4bam/vcf_oncodecode.py -> build/lib/gvc4bam copying gvc4bam/tb_volumes.py -> build/lib/gvc4bam copying gvc4bam/tb_split_ccd.py -> build/lib/gvc4bam copying gvc4bam/check_runtime.py -> build/lib/gvc4bam copying gvc4bam/gvc_check.py -> build/lib/gvc4bam copying gvc4bam/qc_pipeline.py -> build/lib/gvc4bam running build_scripts creating build/scripts-3.4 copying tools/bam_vcf.py -> build/scripts-3.4 copying gvc4bam/gvc_vcf_pipeline.py -> build/scripts-3.4 copying tools/check_runtime.py -> build/scripts-3.4 changing mode of build/scripts-3.4/bam_vcf.py from 644 to 755 changing mode of build/scripts-3.4/gvc_vcf_pipeline.py from 644 to 755 changing mode of build/scripts-3.4/check_runtime.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/tb_bam_choice.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/gvc_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/cnv.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/bam_load_check.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/__init__.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/gvc_vcf_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/variant_interface.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/predict.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/bed_check_sort_reg.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/vcf_oncodecode.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/tb_volumes.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/tb_split_ccd.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/check_runtime.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/gvc_check.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/qc_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam running install_egg_info running egg_info writing top-level names to gvc4bam.egg-info/top_level.txt writing gvc4bam.egg-info/PKG-INFO writing requirements to gvc4bam.egg-info/requires.txt writing dependency_links to gvc4bam.egg-info/dependency_links.txt reading manifest file 'gvc4bam.egg-info/SOURCES.txt' writing manifest file 'gvc4bam.egg-info/SOURCES.txt' Copying gvc4bam.egg-info to build/bdist.linux-armv7l/wheel/gvc4bam-1.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts copying build/scripts-3.4/gvc_vcf_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts copying build/scripts-3.4/bam_vcf.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts copying build/scripts-3.4/check_runtime.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts/gvc_vcf_pipeline.py to 755 changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts/bam_vcf.py to 755 changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.data/scripts/check_runtime.py to 755 creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.dist-info/WHEEL creating '/tmp/pip-wheel-b70ih2lf/gvc4bam-1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'gvc4bam/__init__.py' adding 'gvc4bam/bam_load_check.py' adding 'gvc4bam/bed_check_sort_reg.py' adding 'gvc4bam/check_runtime.py' adding 'gvc4bam/cnv.py' adding 'gvc4bam/gvc_check.py' adding 'gvc4bam/gvc_pipeline.py' adding 'gvc4bam/gvc_vcf_pipeline.py' adding 'gvc4bam/predict.py' adding 'gvc4bam/qc_pipeline.py' adding 'gvc4bam/tb_bam_choice.py' adding 'gvc4bam/tb_split_ccd.py' adding 'gvc4bam/tb_volumes.py' adding 'gvc4bam/variant_interface.py' adding 'gvc4bam/vcf_oncodecode.py' adding 'gvc4bam-1.0.data/scripts/bam_vcf.py' adding 'gvc4bam-1.0.data/scripts/check_runtime.py' adding 'gvc4bam-1.0.data/scripts/gvc_vcf_pipeline.py' adding 'gvc4bam-1.0.dist-info/METADATA' adding 'gvc4bam-1.0.dist-info/WHEEL' adding 'gvc4bam-1.0.dist-info/top_level.txt' adding 'gvc4bam-1.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for gvc4bam: finished with status 'done' Stored in directory: /tmp/tmp3_t8cnd6 Successfully built gvc4bam Cleaning up... Removing source in /tmp/pip-wheel-42ew4sua/gvc4bam Removed build tracker '/tmp/pip-req-tracker-cjxrawfn'