Created temporary directory: /tmp/pip-ephem-wheel-cache-dizd763y Created temporary directory: /tmp/pip-req-tracker-vsm5a4nk Created requirements tracker '/tmp/pip-req-tracker-vsm5a4nk' Created temporary directory: /tmp/pip-wheel-o0upydar Collecting gvc4bam==1.0.2 1 location(s) to search for versions of gvc4bam: * https://pypi.org/simple/gvc4bam/ Getting page https://pypi.org/simple/gvc4bam/ Analyzing links from page https://pypi.org/simple/gvc4bam/ Skipping link https://files.pythonhosted.org/packages/1a/7e/cc547f43dab5a9f0260c98034435dfbf3c71651dc754fa3ab0a13e0ca7c8/gvc4bam-1.0-py2-none-any.whl#sha256=302d2bb8e2a287403e0a7853a613a047f92c9f5414ad640696ffcf24e53ef0c8 (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 (from https://pypi.org/simple/gvc4bam/), version: 1.0 Skipping link https://files.pythonhosted.org/packages/49/2d/8df85edc6ad0bbea201a9c502d0f07d30c8a4c60a26bfe4066b3702507ab/gvc4bam-1.0.1-py2-none-any.whl#sha256=5871155f0b36fc74171d2c6d210c3ce01e980ace91997e8d652f4c6f5e2301a7 (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/e7/0d/f1653c76c67720b60e050ce5ee722dbce69790e45eacc678375a621412b3/gvc4bam-1.0.1.tar.gz#sha256=76e31e3e42c6cfb56c85bb5f95627d16b2dc6b5cdf3ed632c8eedfe17c08138a (from https://pypi.org/simple/gvc4bam/), version: 1.0.1 Skipping link https://files.pythonhosted.org/packages/b5/94/de262e913e4cc00929de7c8b452f06586133fefafaeaf5fb339c2826643d/gvc4bam-1.0.2-py2-none-any.whl#sha256=54442cdf54ac0ccee0b5ec668e25e3a0d9f2a6871739747c8155ebb554309cf3 (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz#sha256=11bbad649df5ac895655862b4c7edd9a24be04bdb2a89372b1f15bbcaa372740 (from https://pypi.org/simple/gvc4bam/), version: 1.0.2 Using version 1.0.2 (newest of versions: 1.0.2) Created temporary directory: /tmp/pip-unpack-bsuqsxr7 Downloading https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz Downloading from URL https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz#sha256=11bbad649df5ac895655862b4c7edd9a24be04bdb2a89372b1f15bbcaa372740 (from https://pypi.org/simple/gvc4bam/) Added gvc4bam==1.0.2 from https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz#sha256=11bbad649df5ac895655862b4c7edd9a24be04bdb2a89372b1f15bbcaa372740 to build tracker '/tmp/pip-req-tracker-vsm5a4nk' Running setup.py (path:/tmp/pip-wheel-o0upydar/gvc4bam/setup.py) egg_info for package gvc4bam Running command python setup.py egg_info running egg_info creating pip-egg-info/gvc4bam.egg-info writing pip-egg-info/gvc4bam.egg-info/PKG-INFO writing top-level names to pip-egg-info/gvc4bam.egg-info/top_level.txt writing dependency_links to pip-egg-info/gvc4bam.egg-info/dependency_links.txt writing requirements to pip-egg-info/gvc4bam.egg-info/requires.txt writing manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-o0upydar/gvc4bam has version 1.0.2, which satisfies requirement gvc4bam==1.0.2 from https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz#sha256=11bbad649df5ac895655862b4c7edd9a24be04bdb2a89372b1f15bbcaa372740 Removed gvc4bam==1.0.2 from https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz#sha256=11bbad649df5ac895655862b4c7edd9a24be04bdb2a89372b1f15bbcaa372740 from build tracker '/tmp/pip-req-tracker-vsm5a4nk' Building wheels for collected packages: gvc4bam Created temporary directory: /tmp/pip-wheel-tf6flwlo Running setup.py bdist_wheel for gvc4bam: started Destination directory: /tmp/pip-wheel-tf6flwlo Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-o0upydar/gvc4bam/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-tf6flwlo running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/gvc4bam copying gvc4bam/gvc_vcf_pipeline.py -> build/lib/gvc4bam copying gvc4bam/variant_interface.py -> build/lib/gvc4bam copying gvc4bam/vcf_oncodecode.py -> build/lib/gvc4bam copying gvc4bam/tb_split_ccd.py -> build/lib/gvc4bam copying gvc4bam/bam_load_check.py -> build/lib/gvc4bam copying gvc4bam/cnv.py -> build/lib/gvc4bam copying gvc4bam/check_runtime.py -> build/lib/gvc4bam copying gvc4bam/gvc_pipeline.py -> build/lib/gvc4bam copying gvc4bam/tb_volumes.py -> build/lib/gvc4bam copying gvc4bam/tb_bam_choice.py -> build/lib/gvc4bam copying gvc4bam/__init__.py -> build/lib/gvc4bam copying gvc4bam/qc_pipeline.py -> build/lib/gvc4bam copying gvc4bam/gvc_check.py -> build/lib/gvc4bam copying gvc4bam/bed_check_sort_reg.py -> build/lib/gvc4bam copying gvc4bam/predict.py -> build/lib/gvc4bam running build_scripts creating build/scripts-3.4 copying tools/bam_vcf.py -> build/scripts-3.4 copying gvc4bam/gvc_vcf_pipeline.py -> build/scripts-3.4 copying tools/check_runtime.py -> build/scripts-3.4 changing mode of build/scripts-3.4/bam_vcf.py from 644 to 755 changing mode of build/scripts-3.4/gvc_vcf_pipeline.py from 644 to 755 changing mode of build/scripts-3.4/check_runtime.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/gvc_vcf_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/variant_interface.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/vcf_oncodecode.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/tb_split_ccd.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/bam_load_check.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/cnv.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/check_runtime.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/gvc_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/tb_volumes.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/tb_bam_choice.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/__init__.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/qc_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/gvc_check.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/bed_check_sort_reg.py -> build/bdist.linux-armv7l/wheel/gvc4bam copying build/lib/gvc4bam/predict.py -> build/bdist.linux-armv7l/wheel/gvc4bam running install_egg_info running egg_info writing top-level names to gvc4bam.egg-info/top_level.txt writing gvc4bam.egg-info/PKG-INFO writing requirements to gvc4bam.egg-info/requires.txt writing dependency_links to gvc4bam.egg-info/dependency_links.txt reading manifest file 'gvc4bam.egg-info/SOURCES.txt' writing manifest file 'gvc4bam.egg-info/SOURCES.txt' Copying gvc4bam.egg-info to build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts copying build/scripts-3.4/gvc_vcf_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts copying build/scripts-3.4/check_runtime.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts copying build/scripts-3.4/bam_vcf.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts/gvc_vcf_pipeline.py to 755 changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts/check_runtime.py to 755 changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.data/scripts/bam_vcf.py to 755 creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.2.dist-info/WHEEL creating '/tmp/pip-wheel-tf6flwlo/gvc4bam-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'gvc4bam/__init__.py' adding 'gvc4bam/bam_load_check.py' adding 'gvc4bam/bed_check_sort_reg.py' adding 'gvc4bam/check_runtime.py' adding 'gvc4bam/cnv.py' adding 'gvc4bam/gvc_check.py' adding 'gvc4bam/gvc_pipeline.py' adding 'gvc4bam/gvc_vcf_pipeline.py' adding 'gvc4bam/predict.py' adding 'gvc4bam/qc_pipeline.py' adding 'gvc4bam/tb_bam_choice.py' adding 'gvc4bam/tb_split_ccd.py' adding 'gvc4bam/tb_volumes.py' adding 'gvc4bam/variant_interface.py' adding 'gvc4bam/vcf_oncodecode.py' adding 'gvc4bam-1.0.2.data/scripts/bam_vcf.py' adding 'gvc4bam-1.0.2.data/scripts/check_runtime.py' adding 'gvc4bam-1.0.2.data/scripts/gvc_vcf_pipeline.py' adding 'gvc4bam-1.0.2.dist-info/METADATA' adding 'gvc4bam-1.0.2.dist-info/WHEEL' adding 'gvc4bam-1.0.2.dist-info/top_level.txt' adding 'gvc4bam-1.0.2.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for gvc4bam: finished with status 'done' Stored in directory: /tmp/tmp_rtwr061 Successfully built gvc4bam Cleaning up... Removing source in /tmp/pip-wheel-o0upydar/gvc4bam Removed build tracker '/tmp/pip-req-tracker-vsm5a4nk'