2019-08-06T07:43:42 Created temporary directory: /tmp/pip-ephem-wheel-cache-q0nypj8n
2019-08-06T07:43:42 Created temporary directory: /tmp/pip-req-tracker-d0ttosic
2019-08-06T07:43:42 Created requirements tracker '/tmp/pip-req-tracker-d0ttosic'
2019-08-06T07:43:42 Created temporary directory: /tmp/pip-wheel-0ab7cr44
2019-08-06T07:43:42 Collecting gvc4bam==1.0.4
2019-08-06T07:43:42   1 location(s) to search for versions of gvc4bam:
2019-08-06T07:43:42   * https://pypi.org/simple/gvc4bam/
2019-08-06T07:43:42   Getting page https://pypi.org/simple/gvc4bam/
2019-08-06T07:43:42   Analyzing links from page https://pypi.org/simple/gvc4bam/
2019-08-06T07:43:43     Skipping link https://files.pythonhosted.org/packages/1a/7e/cc547f43dab5a9f0260c98034435dfbf3c71651dc754fa3ab0a13e0ca7c8/gvc4bam-1.0-py2-none-any.whl#sha256=302d2bb8e2a287403e0a7853a613a047f92c9f5414ad640696ffcf24e53ef0c8 (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python
2019-08-06T07:43:43     Found link https://files.pythonhosted.org/packages/43/1f/39a656fbf071db1a9e3b9fb33bfd0f8505262e4032731ff62b76d39f1058/gvc4bam-1.0.tar.gz#sha256=e839cb7c2614366c367c69a1ac3072671b140195b777ad130d3d2126db6daa60 (from https://pypi.org/simple/gvc4bam/), version: 1.0
2019-08-06T07:43:43     Skipping link https://files.pythonhosted.org/packages/49/2d/8df85edc6ad0bbea201a9c502d0f07d30c8a4c60a26bfe4066b3702507ab/gvc4bam-1.0.1-py2-none-any.whl#sha256=5871155f0b36fc74171d2c6d210c3ce01e980ace91997e8d652f4c6f5e2301a7 (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python
2019-08-06T07:43:43     Found link https://files.pythonhosted.org/packages/e7/0d/f1653c76c67720b60e050ce5ee722dbce69790e45eacc678375a621412b3/gvc4bam-1.0.1.tar.gz#sha256=76e31e3e42c6cfb56c85bb5f95627d16b2dc6b5cdf3ed632c8eedfe17c08138a (from https://pypi.org/simple/gvc4bam/), version: 1.0.1
2019-08-06T07:43:43     Skipping link https://files.pythonhosted.org/packages/b5/94/de262e913e4cc00929de7c8b452f06586133fefafaeaf5fb339c2826643d/gvc4bam-1.0.2-py2-none-any.whl#sha256=54442cdf54ac0ccee0b5ec668e25e3a0d9f2a6871739747c8155ebb554309cf3 (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python
2019-08-06T07:43:43     Found link https://files.pythonhosted.org/packages/ae/27/1046a2ec3c503e734bdb0cb9a50799f62d3ceab211df32d3ca782fb981ec/gvc4bam-1.0.2.tar.gz#sha256=11bbad649df5ac895655862b4c7edd9a24be04bdb2a89372b1f15bbcaa372740 (from https://pypi.org/simple/gvc4bam/), version: 1.0.2
2019-08-06T07:43:43     Skipping link https://files.pythonhosted.org/packages/2e/65/608d5cc79b44c63ec4d97c4eea9439e515835104e357130e0299b2b4951a/gvc4bam-1.0.3-py2-none-any.whl#sha256=16464ba0c0ec86021f57fc6b0c13e4304040390bba9f4fcd6e018016a3de529b (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python
2019-08-06T07:43:43     Found link https://files.pythonhosted.org/packages/df/27/a1fc033c4cb04584dd727fc8d438e71eb69f185d353a17de9444c04a183a/gvc4bam-1.0.3.tar.gz#sha256=9a37ffc1751637936350a6e9ec851cff24a69fa40e9b1ab5592a61d60312e561 (from https://pypi.org/simple/gvc4bam/), version: 1.0.3
2019-08-06T07:43:43     Skipping link https://files.pythonhosted.org/packages/df/5c/b97386ca5c3b3b29c64eeaefdf543ee63d8a76f9a5d4af4d25704cbe9adb/gvc4bam-1.0.4-py2-none-any.whl#sha256=f59cbb74db313107346599906ab7670bc26129bc1f835d84bd648ba9ecfd052c (from https://pypi.org/simple/gvc4bam/); it is not compatible with this Python
2019-08-06T07:43:43     Found link https://files.pythonhosted.org/packages/92/ce/02443e751fb85c6f6936b1fd70055fbd90e320b82d4089fcfc518600f6b0/gvc4bam-1.0.4.tar.gz#sha256=3625cf7b729e6271fd64d4354325cedc36c7d0762d8cdb120e1a0b739116c177 (from https://pypi.org/simple/gvc4bam/), version: 1.0.4
2019-08-06T07:43:43   Using version 1.0.4 (newest of versions: 1.0.4)
2019-08-06T07:43:43   Created temporary directory: /tmp/pip-unpack-16o3uwf4
2019-08-06T07:43:43   Downloading https://files.pythonhosted.org/packages/92/ce/02443e751fb85c6f6936b1fd70055fbd90e320b82d4089fcfc518600f6b0/gvc4bam-1.0.4.tar.gz
2019-08-06T07:43:43   Downloading from URL https://files.pythonhosted.org/packages/92/ce/02443e751fb85c6f6936b1fd70055fbd90e320b82d4089fcfc518600f6b0/gvc4bam-1.0.4.tar.gz#sha256=3625cf7b729e6271fd64d4354325cedc36c7d0762d8cdb120e1a0b739116c177 (from https://pypi.org/simple/gvc4bam/)
2019-08-06T07:43:43   Added gvc4bam==1.0.4 from https://files.pythonhosted.org/packages/92/ce/02443e751fb85c6f6936b1fd70055fbd90e320b82d4089fcfc518600f6b0/gvc4bam-1.0.4.tar.gz#sha256=3625cf7b729e6271fd64d4354325cedc36c7d0762d8cdb120e1a0b739116c177 to build tracker '/tmp/pip-req-tracker-d0ttosic'
2019-08-06T07:43:43     Running setup.py (path:/tmp/pip-wheel-0ab7cr44/gvc4bam/setup.py) egg_info for package gvc4bam
2019-08-06T07:43:43     Running command python setup.py egg_info
2019-08-06T07:43:44     running egg_info
2019-08-06T07:43:44     creating pip-egg-info/gvc4bam.egg-info
2019-08-06T07:43:44     writing pip-egg-info/gvc4bam.egg-info/PKG-INFO
2019-08-06T07:43:44     writing dependency_links to pip-egg-info/gvc4bam.egg-info/dependency_links.txt
2019-08-06T07:43:44     writing requirements to pip-egg-info/gvc4bam.egg-info/requires.txt
2019-08-06T07:43:44     writing top-level names to pip-egg-info/gvc4bam.egg-info/top_level.txt
2019-08-06T07:43:44     writing manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt'
2019-08-06T07:43:44     reading manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt'
2019-08-06T07:43:44     writing manifest file 'pip-egg-info/gvc4bam.egg-info/SOURCES.txt'
2019-08-06T07:43:45   Source in /tmp/pip-wheel-0ab7cr44/gvc4bam has version 1.0.4, which satisfies requirement gvc4bam==1.0.4 from https://files.pythonhosted.org/packages/92/ce/02443e751fb85c6f6936b1fd70055fbd90e320b82d4089fcfc518600f6b0/gvc4bam-1.0.4.tar.gz#sha256=3625cf7b729e6271fd64d4354325cedc36c7d0762d8cdb120e1a0b739116c177
2019-08-06T07:43:45   Removed gvc4bam==1.0.4 from https://files.pythonhosted.org/packages/92/ce/02443e751fb85c6f6936b1fd70055fbd90e320b82d4089fcfc518600f6b0/gvc4bam-1.0.4.tar.gz#sha256=3625cf7b729e6271fd64d4354325cedc36c7d0762d8cdb120e1a0b739116c177 from build tracker '/tmp/pip-req-tracker-d0ttosic'
2019-08-06T07:43:45 Building wheels for collected packages: gvc4bam
2019-08-06T07:43:45   Created temporary directory: /tmp/pip-wheel-rnf84kny
2019-08-06T07:43:45   Building wheel for gvc4bam (setup.py): started
2019-08-06T07:43:45   Destination directory: /tmp/pip-wheel-rnf84kny
2019-08-06T07:43:45   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-0ab7cr44/gvc4bam/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rnf84kny
2019-08-06T07:43:46   running bdist_wheel
2019-08-06T07:43:46   running build
2019-08-06T07:43:46   running build_py
2019-08-06T07:43:46   creating build
2019-08-06T07:43:46   creating build/lib
2019-08-06T07:43:46   creating build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/bam_load_check.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/variant_interface.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/qc_pipeline.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/tb_split_ccd.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/tb_volumes.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/bed_check_sort_reg.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/gvc_vcf_pipeline.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/gvc_pipeline.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/tb_bam_choice.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/cnv.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/vcf_oncodecode.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/check_runtime.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/predict.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/gvc_check.py -> build/lib/gvc4bam
2019-08-06T07:43:46   copying gvc4bam/__init__.py -> build/lib/gvc4bam
2019-08-06T07:43:46   running build_scripts
2019-08-06T07:43:46   creating build/scripts-3.7
2019-08-06T07:43:46   copying and adjusting tools/bam_vcf.py -> build/scripts-3.7
2019-08-06T07:43:46   copying and adjusting gvc4bam/gvc_vcf_pipeline.py -> build/scripts-3.7
2019-08-06T07:43:46   copying tools/check_runtime.py -> build/scripts-3.7
2019-08-06T07:43:46   changing mode of build/scripts-3.7/bam_vcf.py from 644 to 755
2019-08-06T07:43:46   changing mode of build/scripts-3.7/gvc_vcf_pipeline.py from 644 to 755
2019-08-06T07:43:46   changing mode of build/scripts-3.7/check_runtime.py from 644 to 755
2019-08-06T07:43:46   installing to build/bdist.linux-armv7l/wheel
2019-08-06T07:43:46   running install
2019-08-06T07:43:46   running install_lib
2019-08-06T07:43:46   creating build/bdist.linux-armv7l
2019-08-06T07:43:46   creating build/bdist.linux-armv7l/wheel
2019-08-06T07:43:46   creating build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/bam_load_check.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/variant_interface.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/qc_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/tb_split_ccd.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/tb_volumes.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/bed_check_sort_reg.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/gvc_vcf_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/gvc_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/tb_bam_choice.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/cnv.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/vcf_oncodecode.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/check_runtime.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/predict.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/gvc_check.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   copying build/lib/gvc4bam/__init__.py -> build/bdist.linux-armv7l/wheel/gvc4bam
2019-08-06T07:43:46   running install_egg_info
2019-08-06T07:43:46   running egg_info
2019-08-06T07:43:46   writing gvc4bam.egg-info/PKG-INFO
2019-08-06T07:43:46   writing dependency_links to gvc4bam.egg-info/dependency_links.txt
2019-08-06T07:43:46   writing requirements to gvc4bam.egg-info/requires.txt
2019-08-06T07:43:46   writing top-level names to gvc4bam.egg-info/top_level.txt
2019-08-06T07:43:46   reading manifest file 'gvc4bam.egg-info/SOURCES.txt'
2019-08-06T07:43:46   writing manifest file 'gvc4bam.egg-info/SOURCES.txt'
2019-08-06T07:43:46   Copying gvc4bam.egg-info to build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4-py3.7.egg-info
2019-08-06T07:43:47   running install_scripts
2019-08-06T07:43:47   creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data
2019-08-06T07:43:47   creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts
2019-08-06T07:43:47   copying build/scripts-3.7/bam_vcf.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts
2019-08-06T07:43:47   copying build/scripts-3.7/gvc_vcf_pipeline.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts
2019-08-06T07:43:47   copying build/scripts-3.7/check_runtime.py -> build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts
2019-08-06T07:43:47   changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts/bam_vcf.py to 755
2019-08-06T07:43:47   changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts/gvc_vcf_pipeline.py to 755
2019-08-06T07:43:47   changing mode of build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.data/scripts/check_runtime.py to 755
2019-08-06T07:43:47   creating build/bdist.linux-armv7l/wheel/gvc4bam-1.0.4.dist-info/WHEEL
2019-08-06T07:43:47   creating '/tmp/pip-wheel-rnf84kny/gvc4bam-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-08-06T07:43:47   adding 'gvc4bam/__init__.py'
2019-08-06T07:43:47   adding 'gvc4bam/bam_load_check.py'
2019-08-06T07:43:47   adding 'gvc4bam/bed_check_sort_reg.py'
2019-08-06T07:43:47   adding 'gvc4bam/check_runtime.py'
2019-08-06T07:43:47   adding 'gvc4bam/cnv.py'
2019-08-06T07:43:47   adding 'gvc4bam/gvc_check.py'
2019-08-06T07:43:47   adding 'gvc4bam/gvc_pipeline.py'
2019-08-06T07:43:47   adding 'gvc4bam/gvc_vcf_pipeline.py'
2019-08-06T07:43:47   adding 'gvc4bam/predict.py'
2019-08-06T07:43:47   adding 'gvc4bam/qc_pipeline.py'
2019-08-06T07:43:47   adding 'gvc4bam/tb_bam_choice.py'
2019-08-06T07:43:47   adding 'gvc4bam/tb_split_ccd.py'
2019-08-06T07:43:47   adding 'gvc4bam/tb_volumes.py'
2019-08-06T07:43:47   adding 'gvc4bam/variant_interface.py'
2019-08-06T07:43:47   adding 'gvc4bam/vcf_oncodecode.py'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.data/scripts/bam_vcf.py'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.data/scripts/check_runtime.py'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.data/scripts/gvc_vcf_pipeline.py'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.dist-info/METADATA'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.dist-info/WHEEL'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.dist-info/top_level.txt'
2019-08-06T07:43:47   adding 'gvc4bam-1.0.4.dist-info/RECORD'
2019-08-06T07:43:47   removing build/bdist.linux-armv7l/wheel
2019-08-06T07:43:47   Building wheel for gvc4bam (setup.py): finished with status 'done'
2019-08-06T07:43:47   Stored in directory: /tmp/tmpz24uo99j
2019-08-06T07:43:47 Successfully built gvc4bam
2019-08-06T07:43:47 Cleaning up...
2019-08-06T07:43:47   Removing source in /tmp/pip-wheel-0ab7cr44/gvc4bam
2019-08-06T07:43:47 Removed build tracker '/tmp/pip-req-tracker-d0ttosic'