2019-08-15T15:46:51 Created temporary directory: /tmp/pip-ephem-wheel-cache-49xc7uor 2019-08-15T15:46:51 Created temporary directory: /tmp/pip-req-tracker-pffzci66 2019-08-15T15:46:51 Created requirements tracker '/tmp/pip-req-tracker-pffzci66' 2019-08-15T15:46:51 Created temporary directory: /tmp/pip-wheel-lnhdymxd 2019-08-15T15:46:51 Collecting cidc-schemas==0.1.5 2019-08-15T15:46:51 1 location(s) to search for versions of cidc-schemas: 2019-08-15T15:46:51 * https://pypi.org/simple/cidc-schemas/ 2019-08-15T15:46:51 Getting page https://pypi.org/simple/cidc-schemas/ 2019-08-15T15:46:51 Analyzing links from page https://pypi.org/simple/cidc-schemas/ 2019-08-15T15:46:52 Found link https://files.pythonhosted.org/packages/38/94/aaf46b5fb7c5f9e9bca364ab948f7aa9ddc25c155745a935efa38224a03a/cidc_schemas-0.1.0.tar.gz#sha256=db63c08641c12a5637da13e806dafe5f9db2719ad19c3eb077f4a792cab7ed59 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.1.0 2019-08-15T15:46:52 Found link https://files.pythonhosted.org/packages/98/65/b8bf7e1cd409a52e600307edccf30c3024d49c3b6bf9d0cd5dfab9db699a/cidc_schemas-0.1.1.tar.gz#sha256=3cfdd5284f50d3d4ee60decb3642392af5b4175df2d265187139df77a6970a9c (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.1.1 2019-08-15T15:46:52 Found link https://files.pythonhosted.org/packages/fc/bd/29e94033c1d3056d7db0d88eb07c8daae944cf73c54366c2d8b5203fd981/cidc_schemas-0.1.2.tar.gz#sha256=10beb37384460e5da79f9bdb4673a66d71808bbfa2b59849ac99e13de07534d4 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.1.2 2019-08-15T15:46:52 Found link https://files.pythonhosted.org/packages/49/2f/7cdbd999434f01c99b73770bba1e940748aa7b336b710b297b72a21d7b31/cidc_schemas-0.1.3.tar.gz#sha256=e1a4a22197ddd9c8361b3fd6699b094ce7cb48e683deeb6dbb2b6874a50fb5d1 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.1.3 2019-08-15T15:46:52 Found link https://files.pythonhosted.org/packages/a9/4e/3fdc90870e91f66372edf736c99a4eee5f658b4d7313a9739c361eb5fd29/cidc_schemas-0.1.4.tar.gz#sha256=e66ca94b1e300915db806ffc851d951daaec79cf7b9232923e417dec1cda0bc1 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.1.4 2019-08-15T15:46:52 Found link https://files.pythonhosted.org/packages/91/76/cca8329212159d7615ceabda81c82fe8c89825ebdc600fcc14509b3fda87/cidc_schemas-0.1.5.tar.gz#sha256=c195a3b17fb1788323c3c622edfcf2b8be8c7b9979e15dc83e57b71f1a246fd8 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.1.5 2019-08-15T15:46:52 Using version 0.1.5 (newest of versions: 0.1.5) 2019-08-15T15:46:52 Created temporary directory: /tmp/pip-unpack-t152e5kc 2019-08-15T15:46:52 Downloading https://files.pythonhosted.org/packages/91/76/cca8329212159d7615ceabda81c82fe8c89825ebdc600fcc14509b3fda87/cidc_schemas-0.1.5.tar.gz (98kB) 2019-08-15T15:46:52 Downloading from URL https://files.pythonhosted.org/packages/91/76/cca8329212159d7615ceabda81c82fe8c89825ebdc600fcc14509b3fda87/cidc_schemas-0.1.5.tar.gz#sha256=c195a3b17fb1788323c3c622edfcf2b8be8c7b9979e15dc83e57b71f1a246fd8 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6) 2019-08-15T15:46:52 Added cidc-schemas==0.1.5 from https://files.pythonhosted.org/packages/91/76/cca8329212159d7615ceabda81c82fe8c89825ebdc600fcc14509b3fda87/cidc_schemas-0.1.5.tar.gz#sha256=c195a3b17fb1788323c3c622edfcf2b8be8c7b9979e15dc83e57b71f1a246fd8 to build tracker '/tmp/pip-req-tracker-pffzci66' 2019-08-15T15:46:52 Running setup.py (path:/tmp/pip-wheel-lnhdymxd/cidc-schemas/setup.py) egg_info for package cidc-schemas 2019-08-15T15:46:52 Running command python setup.py egg_info 2019-08-15T15:46:54 running egg_info 2019-08-15T15:46:54 creating pip-egg-info/cidc_schemas.egg-info 2019-08-15T15:46:54 writing pip-egg-info/cidc_schemas.egg-info/PKG-INFO 2019-08-15T15:46:54 writing dependency_links to pip-egg-info/cidc_schemas.egg-info/dependency_links.txt 2019-08-15T15:46:54 writing entry points to pip-egg-info/cidc_schemas.egg-info/entry_points.txt 2019-08-15T15:46:54 writing requirements to pip-egg-info/cidc_schemas.egg-info/requires.txt 2019-08-15T15:46:54 writing top-level names to pip-egg-info/cidc_schemas.egg-info/top_level.txt 2019-08-15T15:46:54 writing manifest file 'pip-egg-info/cidc_schemas.egg-info/SOURCES.txt' 2019-08-15T15:46:54 reading manifest file 'pip-egg-info/cidc_schemas.egg-info/SOURCES.txt' 2019-08-15T15:46:54 reading manifest template 'MANIFEST.in' 2019-08-15T15:46:54 warning: no previously-included files matching '__pycache__' found under directory '*' 2019-08-15T15:46:54 warning: no previously-included files matching '*.py[co]' found under directory '*' 2019-08-15T15:46:54 warning: no files found matching '*.rst' under directory 'docs' 2019-08-15T15:46:54 warning: no files found matching 'conf.py' under directory 'docs' 2019-08-15T15:46:54 warning: no files found matching 'Makefile' under directory 'docs' 2019-08-15T15:46:54 warning: no files found matching 'make.bat' under directory 'docs' 2019-08-15T15:46:54 warning: no files found matching '*.jpg' under directory 'docs' 2019-08-15T15:46:54 warning: no files found matching '*.png' under directory 'docs' 2019-08-15T15:46:54 warning: no files found matching '*.gif' under directory 'docs' 2019-08-15T15:46:54 writing manifest file 'pip-egg-info/cidc_schemas.egg-info/SOURCES.txt' 2019-08-15T15:46:54 Source in /tmp/pip-wheel-lnhdymxd/cidc-schemas has version 0.1.5, which satisfies requirement cidc-schemas==0.1.5 from https://files.pythonhosted.org/packages/91/76/cca8329212159d7615ceabda81c82fe8c89825ebdc600fcc14509b3fda87/cidc_schemas-0.1.5.tar.gz#sha256=c195a3b17fb1788323c3c622edfcf2b8be8c7b9979e15dc83e57b71f1a246fd8 2019-08-15T15:46:54 Removed cidc-schemas==0.1.5 from https://files.pythonhosted.org/packages/91/76/cca8329212159d7615ceabda81c82fe8c89825ebdc600fcc14509b3fda87/cidc_schemas-0.1.5.tar.gz#sha256=c195a3b17fb1788323c3c622edfcf2b8be8c7b9979e15dc83e57b71f1a246fd8 from build tracker '/tmp/pip-req-tracker-pffzci66' 2019-08-15T15:46:54 Building wheels for collected packages: cidc-schemas 2019-08-15T15:46:54 Created temporary directory: /tmp/pip-wheel-gn2j3lqe 2019-08-15T15:46:54 Building wheel for cidc-schemas (setup.py): started 2019-08-15T15:46:54 Destination directory: /tmp/pip-wheel-gn2j3lqe 2019-08-15T15:46:54 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-lnhdymxd/cidc-schemas/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gn2j3lqe 2019-08-15T15:46:56 running bdist_wheel 2019-08-15T15:46:56 running build 2019-08-15T15:46:56 running build_py 2019-08-15T15:46:56 creating build 2019-08-15T15:46:56 creating build/lib 2019-08-15T15:46:56 creating build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/template.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/constants.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/template_reader.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/json_validation.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/__init__.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/cli.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/prism.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/template_writer.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 copying cidc_schemas/util.py -> build/lib/cidc_schemas 2019-08-15T15:46:56 running egg_info 2019-08-15T15:46:56 writing cidc_schemas.egg-info/PKG-INFO 2019-08-15T15:46:56 writing dependency_links to cidc_schemas.egg-info/dependency_links.txt 2019-08-15T15:46:56 writing entry points to cidc_schemas.egg-info/entry_points.txt 2019-08-15T15:46:56 writing requirements to cidc_schemas.egg-info/requires.txt 2019-08-15T15:46:56 writing top-level names to cidc_schemas.egg-info/top_level.txt 2019-08-15T15:46:56 reading manifest file 'cidc_schemas.egg-info/SOURCES.txt' 2019-08-15T15:46:56 reading manifest template 'MANIFEST.in' 2019-08-15T15:46:56 warning: no previously-included files matching '__pycache__' found under directory '*' 2019-08-15T15:46:56 warning: no previously-included files matching '*.py[co]' found under directory '*' 2019-08-15T15:46:56 warning: no files found matching '*.rst' under directory 'docs' 2019-08-15T15:46:56 warning: no files found matching 'conf.py' under directory 'docs' 2019-08-15T15:46:56 warning: no files found matching 'Makefile' under directory 'docs' 2019-08-15T15:46:56 warning: no files found matching 'make.bat' under directory 'docs' 2019-08-15T15:46:56 warning: no files found matching '*.jpg' under directory 'docs' 2019-08-15T15:46:56 warning: no files found matching '*.png' under directory 'docs' 2019-08-15T15:46:56 warning: no files found matching '*.gif' under directory 'docs' 2019-08-15T15:46:56 writing manifest file 'cidc_schemas.egg-info/SOURCES.txt' 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 copying cidc_schemas/schemas/aliquot.json -> build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 copying cidc_schemas/schemas/clinical_trial.json -> build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 copying cidc_schemas/schemas/participant.json -> build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 copying cidc_schemas/schemas/sample.json -> build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 copying cidc_schemas/schemas/shipping_core.json -> build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 copying cidc_schemas/schemas/user.json -> build/lib/cidc_schemas/schemas 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_bam.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_binary.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_core.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_csv.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_fastq.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_image.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_text.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying cidc_schemas/schemas/artifacts/artifact_vcf.json -> build/lib/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/cytof_assay.json -> build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/micsss_assay.json -> build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/mif_assay.json -> build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/olink_assay.json -> build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/rna_expression_assay.json -> build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/wes_assay.json -> build/lib/cidc_schemas/schemas/assays 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/alignment.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/aliquot_to_assay.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/assay_core.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/composite_image.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/cytof_acquisition.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/cytof_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/cytof_panel.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/cytof_platform.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/fastq_pairs.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/germline.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/image.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/imaging_data.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/local_file.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/mapping.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/micsss_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/mif_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs.json -> build/lib/cidc_schemas/schemas/assays/components 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/assays/components/cytof 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/cytof/cytof_entry.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/cytof/cytof_input.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/imaging/micsss_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/imaging/micsss_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/imaging/mif_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/imaging/mif_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/ngs_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/rna_expression_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/rna_input.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/wes_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/wes_export.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/wes_input.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/ngs/wes_output.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/assays/components/olink 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/olink/olink_entry.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2019-08-15T15:46:56 copying cidc_schemas/schemas/assays/components/olink/olink_input.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/templates 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/manifests/analyte_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/manifests/hne_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/manifests/pbmc_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/manifests/plasma_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/manifests/whole_blood_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:56 creating build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/metadata/cytof_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/metadata/micsss_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/metadata/mif_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/metadata/olink_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/metadata/rna_expression_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 copying cidc_schemas/schemas/templates/metadata/wes_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:56 installing to build/bdist.linux-armv7l/wheel 2019-08-15T15:46:56 running install 2019-08-15T15:46:56 running install_lib 2019-08-15T15:46:56 creating build/bdist.linux-armv7l 2019-08-15T15:46:56 creating build/bdist.linux-armv7l/wheel 2019-08-15T15:46:56 creating build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:56 copying build/lib/cidc_schemas/template.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:56 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:56 copying build/lib/cidc_schemas/schemas/aliquot.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:56 copying build/lib/cidc_schemas/schemas/participant.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:56 copying build/lib/cidc_schemas/schemas/user.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:56 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying build/lib/cidc_schemas/schemas/artifacts/artifact_image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:56 copying build/lib/cidc_schemas/schemas/artifacts/artifact_bam.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/artifacts/artifact_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/artifacts/artifact_vcf.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/artifacts/artifact_csv.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/artifacts/artifact_binary.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/artifacts/artifact_fastq.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/artifacts/artifact_text.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/manifests/hne_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/manifests/whole_blood_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/manifests/pbmc_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/manifests/plasma_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/manifests/analyte_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/metadata/rna_expression_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/metadata/olink_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/metadata/wes_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/metadata/cytof_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/metadata/micsss_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/templates/metadata/mif_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/clinical_trial.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/cytof_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/micsss_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/olink_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/mif_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/alignment.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/mif_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/assay_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/cytof_platform.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/aliquot_to_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/imaging_data.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/germline.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/mapping.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes_output.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna_expression_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/ngs_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes_export.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/cytof_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/micsss_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/imaging/micsss_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/imaging/micsss_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/cytof_panel.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/composite_image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/local_file.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/fastq_pairs.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/cytof_acquisition.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/components/antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/wes_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/assays/rna_expression_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/shipping_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/schemas/sample.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/constants.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/template_reader.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/json_validation.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/__init__.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/cli.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/prism.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/template_writer.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 copying build/lib/cidc_schemas/util.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2019-08-15T15:46:57 running install_egg_info 2019-08-15T15:46:57 Copying cidc_schemas.egg-info to build/bdist.linux-armv7l/wheel/cidc_schemas-0.1.5-py3.7.egg-info 2019-08-15T15:46:57 running install_scripts 2019-08-15T15:46:57 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2019-08-15T15:46:57 adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") 2019-08-15T15:46:57 creating build/bdist.linux-armv7l/wheel/cidc_schemas-0.1.5.dist-info/WHEEL 2019-08-15T15:46:57 creating '/tmp/pip-wheel-gn2j3lqe/cidc_schemas-0.1.5-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2019-08-15T15:46:57 adding 'cidc_schemas/__init__.py' 2019-08-15T15:46:57 adding 'cidc_schemas/cli.py' 2019-08-15T15:46:57 adding 'cidc_schemas/constants.py' 2019-08-15T15:46:57 adding 'cidc_schemas/json_validation.py' 2019-08-15T15:46:57 adding 'cidc_schemas/prism.py' 2019-08-15T15:46:57 adding 'cidc_schemas/template.py' 2019-08-15T15:46:57 adding 'cidc_schemas/template_reader.py' 2019-08-15T15:46:57 adding 'cidc_schemas/template_writer.py' 2019-08-15T15:46:57 adding 'cidc_schemas/util.py' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/aliquot.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/clinical_trial.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/participant.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/sample.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/shipping_core.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/user.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_bam.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_binary.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_core.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_csv.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_fastq.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_image.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_text.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/artifacts/artifact_vcf.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/cytof_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/micsss_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/mif_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/olink_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/rna_expression_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/wes_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/alignment.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/aliquot_to_assay.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/antibody.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/assay_core.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/composite_image.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/cytof_acquisition.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/cytof_antibody.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/cytof_panel.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/cytof_platform.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/fastq_pairs.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/germline.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/image.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/imaging_data.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/local_file.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/mapping.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/micsss_antibody.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/mif_antibody.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_input.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/imaging/micsss_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/imaging/micsss_input.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/imaging/mif_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/imaging/mif_input.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/ngs_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/rna_expression_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/rna_input.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/wes_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/wes_export.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/wes_input.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/ngs/wes_output.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/olink/olink_entry.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/assays/components/olink/olink_input.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/manifests/analyte_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/manifests/hne_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/manifests/pbmc_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/manifests/plasma_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/manifests/whole_blood_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/metadata/cytof_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/metadata/micsss_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/metadata/mif_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/metadata/olink_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/metadata/rna_expression_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas/schemas/templates/metadata/wes_template.json' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/AUTHORS.rst' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/LICENSE' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/METADATA' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/WHEEL' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/entry_points.txt' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/top_level.txt' 2019-08-15T15:46:57 adding 'cidc_schemas-0.1.5.dist-info/RECORD' 2019-08-15T15:46:57 removing build/bdist.linux-armv7l/wheel 2019-08-15T15:46:57 Building wheel for cidc-schemas (setup.py): finished with status 'done' 2019-08-15T15:46:57 Stored in directory: /tmp/tmp_yu34049 2019-08-15T15:46:57 Successfully built cidc-schemas 2019-08-15T15:46:57 Cleaning up... 2019-08-15T15:46:57 Removing source in /tmp/pip-wheel-lnhdymxd/cidc-schemas 2019-08-15T15:46:58 Removed build tracker '/tmp/pip-req-tracker-pffzci66'