2019-08-23T19:22:06 Created temporary directory: /tmp/pip-ephem-wheel-cache-wkdbi1jd
2019-08-23T19:22:06 Created temporary directory: /tmp/pip-req-tracker-0yvgky0v
2019-08-23T19:22:06 Created requirements tracker '/tmp/pip-req-tracker-0yvgky0v'
2019-08-23T19:22:06 Created temporary directory: /tmp/pip-wheel-kq57f42u
2019-08-23T19:22:06 Collecting py-popgen==0.1.1
2019-08-23T19:22:06   1 location(s) to search for versions of py-popgen:
2019-08-23T19:22:06   * https://pypi.org/simple/py-popgen/
2019-08-23T19:22:06   Getting page https://pypi.org/simple/py-popgen/
2019-08-23T19:22:06   Analyzing links from page https://pypi.org/simple/py-popgen/
2019-08-23T19:22:06     Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz#sha256=c95c719e8e1536b59b32fd617118d8374e8b4438ec114d1fc48704ccf9ccaf9a (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2019-08-23T19:22:06     Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz#sha256=150557350080571d2db292b647478c80bfe7bfd81a3750db368276e613fae36d (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2019-08-23T19:22:06     Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2019-08-23T19:22:06     Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2019-08-23T19:22:06   Using version 0.1.1 (newest of versions: 0.1.1)
2019-08-23T19:22:06   Created temporary directory: /tmp/pip-unpack-zrr1dst5
2019-08-23T19:22:06   Downloading https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (27.2MB)
2019-08-23T19:22:06   Downloading from URL https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2019-08-23T19:22:16   Added py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 to build tracker '/tmp/pip-req-tracker-0yvgky0v'
2019-08-23T19:22:16     Running setup.py (path:/tmp/pip-wheel-kq57f42u/py-popgen/setup.py) egg_info for package py-popgen
2019-08-23T19:22:16     Running command python setup.py egg_info
2019-08-23T19:22:19     running egg_info
2019-08-23T19:22:19     creating pip-egg-info/py_popgen.egg-info
2019-08-23T19:22:19     writing pip-egg-info/py_popgen.egg-info/PKG-INFO
2019-08-23T19:22:19     writing dependency_links to pip-egg-info/py_popgen.egg-info/dependency_links.txt
2019-08-23T19:22:19     writing requirements to pip-egg-info/py_popgen.egg-info/requires.txt
2019-08-23T19:22:19     writing top-level names to pip-egg-info/py_popgen.egg-info/top_level.txt
2019-08-23T19:22:19     writing manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2019-08-23T19:22:19     reading manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2019-08-23T19:22:19     reading manifest template 'MANIFEST.in'
2019-08-23T19:22:19     writing manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2019-08-23T19:22:19   Source in /tmp/pip-wheel-kq57f42u/py-popgen has version 0.1.1, which satisfies requirement py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32
2019-08-23T19:22:19   Removed py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 from build tracker '/tmp/pip-req-tracker-0yvgky0v'
2019-08-23T19:22:19 Building wheels for collected packages: py-popgen
2019-08-23T19:22:19   Created temporary directory: /tmp/pip-wheel-ky69rt2o
2019-08-23T19:22:19   Building wheel for py-popgen (setup.py): started
2019-08-23T19:22:19   Destination directory: /tmp/pip-wheel-ky69rt2o
2019-08-23T19:22:19   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-kq57f42u/py-popgen/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ky69rt2o
2019-08-23T19:22:22   running bdist_wheel
2019-08-23T19:22:22   running build
2019-08-23T19:22:22   running build_py
2019-08-23T19:22:22   creating build
2019-08-23T19:22:22   creating build/lib.linux-armv7l-3.7
2019-08-23T19:22:22   creating build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/picard.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/admixture.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/model.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/plink.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/fasta.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/__init__.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/beagle.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/convert.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   running egg_info
2019-08-23T19:22:22   writing py_popgen.egg-info/PKG-INFO
2019-08-23T19:22:22   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2019-08-23T19:22:22   writing requirements to py_popgen.egg-info/requires.txt
2019-08-23T19:22:22   writing top-level names to py_popgen.egg-info/top_level.txt
2019-08-23T19:22:22   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2019-08-23T19:22:22   reading manifest template 'MANIFEST.in'
2019-08-23T19:22:22   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2019-08-23T19:22:22   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   running build_ext
2019-08-23T19:22:22   building 'pgpipe.test_cython' extension
2019-08-23T19:22:22   creating build/temp.linux-armv7l-3.7
2019-08-23T19:22:22   creating build/temp.linux-armv7l-3.7/pgpipe
2019-08-23T19:22:22   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c pgpipe/test_cython.c -o build/temp.linux-armv7l-3.7/pgpipe/test_cython.o
2019-08-23T19:22:23   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2019-08-23T19:22:23   pgpipe/test_cython.c:1426:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2019-08-23T19:22:23          (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2019-08-23T19:22:23                    ^
2019-08-23T19:22:23   pgpipe/test_cython.c:1426:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2019-08-23T19:22:23          (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2019-08-23T19:22:23                                              ^
2019-08-23T19:22:23   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2019-08-23T19:22:23   pgpipe/test_cython.c:1842:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2019-08-23T19:22:23          (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2019-08-23T19:22:23                    ^
2019-08-23T19:22:23   pgpipe/test_cython.c:1842:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2019-08-23T19:22:23          (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2019-08-23T19:22:23                                              ^
2019-08-23T19:22:25   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pgpipe/test_cython.o -o build/lib.linux-armv7l-3.7/pgpipe/test_cython.cpython-37m-arm-linux-gnueabihf.so
2019-08-23T19:22:26   running build_scripts
2019-08-23T19:22:26   creating build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.7
2019-08-23T19:22:26   copying pgpipe/four_gamete.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/convert.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/admixture.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.7
2019-08-23T19:22:26   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.7
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_calc.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_split.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_phase.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/four_gamete.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/stat_sampler.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/bed_tasks.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/informative_loci_filter.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/convert.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_to_ima.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/admixture.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/plink_ld.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/ima3_wrapper.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/eigenstrat_fstats.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_liftover.py from 644 to 755
2019-08-23T19:22:26   changing mode of build/scripts-3.7/vcf_utilities.py from 644 to 755
2019-08-23T19:22:26   installing to build/bdist.linux-armv7l/wheel
2019-08-23T19:22:26   running install
2019-08-23T19:22:26   running install_lib
2019-08-23T19:22:26   creating build/bdist.linux-armv7l
2019-08-23T19:22:26   creating build/bdist.linux-armv7l/wheel
2019-08-23T19:22:26   creating build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/test_cython.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   copying build/lib.linux-armv7l-3.7/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2019-08-23T19:22:26   running install_egg_info
2019-08-23T19:22:26   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.1-py3.7.egg-info
2019-08-23T19:22:26   running install_scripts
2019-08-23T19:22:26   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data
2019-08-23T19:22:26   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   copying build/scripts-3.7/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_to_ima.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/four_gamete.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_filter.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_calc.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_liftover.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/informative_loci_filter.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/admixture.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_split.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/stat_sampler.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_utilities.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/bed_tasks.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/eigenstrat_fstats.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_phase.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/plink_ld.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/ima3_wrapper.py to 755
2019-08-23T19:22:26   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/convert.py to 755
2019-08-23T19:22:26   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.dist-info/WHEEL
2019-08-23T19:22:26   creating '/tmp/pip-wheel-ky69rt2o/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-08-23T19:22:26   adding 'pgpipe/__init__.py'
2019-08-23T19:22:26   adding 'pgpipe/admixtools.py'
2019-08-23T19:22:26   adding 'pgpipe/admixture.py'
2019-08-23T19:22:26   adding 'pgpipe/argparse_sets.py'
2019-08-23T19:22:26   adding 'pgpipe/bcftools.py'
2019-08-23T19:22:26   adding 'pgpipe/beagle.py'
2019-08-23T19:22:26   adding 'pgpipe/bed_invert.py'
2019-08-23T19:22:26   adding 'pgpipe/bed_tasks.py'
2019-08-23T19:22:26   adding 'pgpipe/bedtools.py'
2019-08-23T19:22:26   adding 'pgpipe/convert.py'
2019-08-23T19:22:26   adding 'pgpipe/eigenstrat_fstats.py'
2019-08-23T19:22:26   adding 'pgpipe/extend_loci.py'
2019-08-23T19:22:26   adding 'pgpipe/fasta.py'
2019-08-23T19:22:26   adding 'pgpipe/fasta_utilities.py'
2019-08-23T19:22:26   adding 'pgpipe/filter_single_vcf.py'
2019-08-23T19:22:26   adding 'pgpipe/four_gamete.py'
2019-08-23T19:22:26   adding 'pgpipe/genome_region.py'
2019-08-23T19:22:26   adding 'pgpipe/get_nonmissing_chunks.py'
2019-08-23T19:22:26   adding 'pgpipe/graph_plotter.py'
2019-08-23T19:22:26   adding 'pgpipe/ima3_wrapper.py'
2019-08-23T19:22:26   adding 'pgpipe/ima_priors.py'
2019-08-23T19:22:26   adding 'pgpipe/ima_to_treemix.py'
2019-08-23T19:22:26   adding 'pgpipe/informative_loci_filter.py'
2019-08-23T19:22:26   adding 'pgpipe/logging_module.py'
2019-08-23T19:22:26   adding 'pgpipe/min_pop_filter.py'
2019-08-23T19:22:26   adding 'pgpipe/model.py'
2019-08-23T19:22:26   adding 'pgpipe/model_creator.py'
2019-08-23T19:22:26   adding 'pgpipe/model_sampler.py'
2019-08-23T19:22:26   adding 'pgpipe/parse_functions.py'
2019-08-23T19:22:26   adding 'pgpipe/picard.py'
2019-08-23T19:22:26   adding 'pgpipe/plink.py'
2019-08-23T19:22:26   adding 'pgpipe/plink_ld.py'
2019-08-23T19:22:26   adding 'pgpipe/shapeit.py'
2019-08-23T19:22:26   adding 'pgpipe/site_stats.py'
2019-08-23T19:22:26   adding 'pgpipe/stat_sampler.py'
2019-08-23T19:22:26   adding 'pgpipe/subtract_bed.py'
2019-08-23T19:22:26   adding 'pgpipe/test_cython.c'
2019-08-23T19:22:26   adding 'pgpipe/test_cython.cpython-37m-arm-linux-gnueabihf.so'
2019-08-23T19:22:26   adding 'pgpipe/test_cython.pyx'
2019-08-23T19:22:26   adding 'pgpipe/vcf_calc.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_filter.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_filter_bcftools.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_filter_vcftools.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_liftover.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_phase.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_reader_func.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_ref_to_seq.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_sampler.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_split.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_split_pysam.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_to_ima.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_to_treemix.py'
2019-08-23T19:22:27   adding 'pgpipe/vcf_utilities.py'
2019-08-23T19:22:27   adding 'pgpipe/vcftools.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/admixture.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/bed_tasks.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/convert.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/eigenstrat_fstats.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/four_gamete.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/ima3_wrapper.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/informative_loci_filter.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/plink_ld.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/stat_sampler.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_calc.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_filter.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_liftover.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_phase.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_split.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_to_ima.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.data/scripts/vcf_utilities.py'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.dist-info/METADATA'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.dist-info/WHEEL'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.dist-info/top_level.txt'
2019-08-23T19:22:27   adding 'py_popgen-0.1.1.dist-info/RECORD'
2019-08-23T19:22:27   removing build/bdist.linux-armv7l/wheel
2019-08-23T19:22:27   Building wheel for py-popgen (setup.py): finished with status 'done'
2019-08-23T19:22:27   Stored in directory: /tmp/tmp41hbeao6
2019-08-23T19:22:27 Successfully built py-popgen
2019-08-23T19:22:27 Cleaning up...
2019-08-23T19:22:27   Removing source in /tmp/pip-wheel-kq57f42u/py-popgen
2019-08-23T19:22:27 Removed build tracker '/tmp/pip-req-tracker-0yvgky0v'