Created temporary directory: /tmp/pip-ephem-wheel-cache-iezxle3g Created temporary directory: /tmp/pip-req-tracker-wbwppsho Created requirements tracker '/tmp/pip-req-tracker-wbwppsho' Created temporary directory: /tmp/pip-wheel-2aipo7a5 Collecting genomepy==0.6.0 1 location(s) to search for versions of genomepy: * https://pypi.org/simple/genomepy/ Getting page https://pypi.org/simple/genomepy/ Analyzing links from page https://pypi.org/simple/genomepy/ Found link https://files.pythonhosted.org/packages/c0/49/e4aa0b64eda667bbd4c6fb3d0b6c6fb0d4a0ba03ceda3a4409a60f76d41b/genomepy-0.0.1.tar.gz#sha256=9383ef4d2d7b7c008bf4150674c6058efa434235e4c08f2f1b201b888e424389 (from https://pypi.org/simple/genomepy/), version: 0.0.1 Found link https://files.pythonhosted.org/packages/f5/51/e073d9fd991f7048af595c0655947eb6b94aea4e8d6a498bb8fc6558b7c3/genomepy-0.0.2.tar.gz#sha256=f3b31d979129c9314d36803c2311d33138a5a2e70286ca86341733c09b855697 (from https://pypi.org/simple/genomepy/), version: 0.0.2 Found link https://files.pythonhosted.org/packages/8b/f7/2ff0b588d992e55b034d2dd38d0c2b25b3101edb14f49aae15969f5162ad/genomepy-0.2.1.tar.gz#sha256=2eac89557e658e6843350a56d14fbde23dfd44b1b5d7e20ba8b166fcbf2a3df7 (from https://pypi.org/simple/genomepy/), version: 0.2.1 Found link https://files.pythonhosted.org/packages/10/64/a5bcce920dbd4d139e719692932e2b3b390b7fa843eb4d2c7dac8f46c16c/genomepy-0.2.2.tar.gz#sha256=cc66cd4ecae6db0fa339e3d806556a7a75515d1df640a226e633770bf1f64f34 (from https://pypi.org/simple/genomepy/), version: 0.2.2 Found link https://files.pythonhosted.org/packages/73/5c/c9658f1df6016c0d9e3fa1b8bf9e02b5cff3402e9a18695ce23c778506ae/genomepy-0.2.3.tar.gz#sha256=3ed3405fc627a0f107c29c79e832e33517c0ea64a5a9f69a63eb8ceec1d2267d (from https://pypi.org/simple/genomepy/), version: 0.2.3 Found link https://files.pythonhosted.org/packages/8d/12/5a10995e86898b161b1e2e402adbe48e3d1b1e186dc7da520371fff8ee82/genomepy-0.3.0.tar.gz#sha256=bc381751e7cef7d2d825ed46135fcda8c7c0af81a9aa22af8efb6d7b498051a8 (from https://pypi.org/simple/genomepy/), version: 0.3.0 Found link https://files.pythonhosted.org/packages/7c/b2/e5bd26c22ac60d21cebfce9716f3817927e675d31bf9e8a6f2e9d28161cc/genomepy-0.3.1.tar.gz#sha256=3ebdfca46504bedd1edfdb938d8c779a67fc7e1da0287c360c71b8b7434f2dd1 (from https://pypi.org/simple/genomepy/), version: 0.3.1 Found link https://files.pythonhosted.org/packages/5a/a0/e2be6ce2c7bf329fa6cafe2885056bcb6f2454b89770d12c4680b5aa6045/genomepy-0.4.0.tar.gz#sha256=81cf2885b47812bfcf1194647f7f2cb3ee35c094c91b7c00db45ff3430592998 (from https://pypi.org/simple/genomepy/), version: 0.4.0 Found link https://files.pythonhosted.org/packages/7b/e5/bad5d131f07fe68cdfc4284da5aa003751b8a29295b0e07b652d3990d93f/genomepy-0.5.0.tar.gz#sha256=873143fe108f98c44c013c9137c594ccd8b6f09f43c62d8320932bfda824bce6 (from https://pypi.org/simple/genomepy/), version: 0.5.0 Found link https://files.pythonhosted.org/packages/2f/84/48ab53e0ee9aada69d49305958acd9366c242af0ec41dab7a14c2496f3ee/genomepy-0.5.2.tar.gz#sha256=fa78b8d53b952ff200a6b7f7ed28aae64d57ef2a99bcb6df1bb4b16bef403895 (from https://pypi.org/simple/genomepy/), version: 0.5.2 Found link https://files.pythonhosted.org/packages/31/e0/7e7aba592687fe2b167f9b252a203cb87a2cd79631d10a73219e55c45885/genomepy-0.5.4.tar.gz#sha256=713846f815dcb5cae73851c00b4bc9a8e97c44cb6616b3719ed9c0bccb47eea8 (from https://pypi.org/simple/genomepy/), version: 0.5.4 Found link https://files.pythonhosted.org/packages/39/01/16f3255ea9ee768d78237f9fb302ebc5591d5bbe459259ccfa508b8b5fa4/genomepy-0.5.5.tar.gz#sha256=f6eabb8834d45aff9f22c17178c45f7445b518821d6185b10cb4d1479688e5db (from https://pypi.org/simple/genomepy/), version: 0.5.5 Found link https://files.pythonhosted.org/packages/66/51/c6bf96cc84323cd89e00ffd0f18872f55f40bd6b0370e8cd8f76f041c23f/genomepy-0.6.0.tar.gz#sha256=13f171150868aceff5c1c0ae93f7bcc7420c9b81d914abd76fe3c0cb644d06d1 (from https://pypi.org/simple/genomepy/), version: 0.6.0 Using version 0.6.0 (newest of versions: 0.6.0) Created temporary directory: /tmp/pip-unpack-lrn8z7ii Downloading https://files.pythonhosted.org/packages/66/51/c6bf96cc84323cd89e00ffd0f18872f55f40bd6b0370e8cd8f76f041c23f/genomepy-0.6.0.tar.gz Downloading from URL https://files.pythonhosted.org/packages/66/51/c6bf96cc84323cd89e00ffd0f18872f55f40bd6b0370e8cd8f76f041c23f/genomepy-0.6.0.tar.gz#sha256=13f171150868aceff5c1c0ae93f7bcc7420c9b81d914abd76fe3c0cb644d06d1 (from https://pypi.org/simple/genomepy/) Added genomepy==0.6.0 from https://files.pythonhosted.org/packages/66/51/c6bf96cc84323cd89e00ffd0f18872f55f40bd6b0370e8cd8f76f041c23f/genomepy-0.6.0.tar.gz#sha256=13f171150868aceff5c1c0ae93f7bcc7420c9b81d914abd76fe3c0cb644d06d1 to build tracker '/tmp/pip-req-tracker-wbwppsho' Running setup.py (path:/tmp/pip-wheel-2aipo7a5/genomepy/setup.py) egg_info for package genomepy Running command python setup.py egg_info running egg_info creating pip-egg-info/genomepy.egg-info writing top-level names to pip-egg-info/genomepy.egg-info/top_level.txt writing entry points to pip-egg-info/genomepy.egg-info/entry_points.txt writing pip-egg-info/genomepy.egg-info/PKG-INFO writing requirements to pip-egg-info/genomepy.egg-info/requires.txt writing dependency_links to pip-egg-info/genomepy.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/genomepy.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/genomepy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/genomepy.egg-info/SOURCES.txt' Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Source in /tmp/pip-wheel-2aipo7a5/genomepy has version 0.6.0, which satisfies requirement genomepy==0.6.0 from https://files.pythonhosted.org/packages/66/51/c6bf96cc84323cd89e00ffd0f18872f55f40bd6b0370e8cd8f76f041c23f/genomepy-0.6.0.tar.gz#sha256=13f171150868aceff5c1c0ae93f7bcc7420c9b81d914abd76fe3c0cb644d06d1 Removed genomepy==0.6.0 from https://files.pythonhosted.org/packages/66/51/c6bf96cc84323cd89e00ffd0f18872f55f40bd6b0370e8cd8f76f041c23f/genomepy-0.6.0.tar.gz#sha256=13f171150868aceff5c1c0ae93f7bcc7420c9b81d914abd76fe3c0cb644d06d1 from build tracker '/tmp/pip-req-tracker-wbwppsho' Building wheels for collected packages: genomepy Created temporary directory: /tmp/pip-wheel-dljvt_g9 Running setup.py bdist_wheel for genomepy: started Destination directory: /tmp/pip-wheel-dljvt_g9 Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-2aipo7a5/genomepy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-dljvt_g9 Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/genomepy copying genomepy/__about__.py -> build/lib/genomepy copying genomepy/exceptions.py -> build/lib/genomepy copying genomepy/utils.py -> build/lib/genomepy copying genomepy/__init__.py -> build/lib/genomepy copying genomepy/cli.py -> build/lib/genomepy copying genomepy/functions.py -> build/lib/genomepy copying genomepy/plugin.py -> build/lib/genomepy copying genomepy/provider.py -> build/lib/genomepy creating build/lib/genomepy/plugins copying genomepy/plugins/sizes.py -> build/lib/genomepy/plugins copying genomepy/plugins/blacklist.py -> build/lib/genomepy/plugins copying genomepy/plugins/__init__.py -> build/lib/genomepy/plugins copying genomepy/plugins/gaps.py -> build/lib/genomepy/plugins copying genomepy/plugins/bwa.py -> build/lib/genomepy/plugins copying genomepy/plugins/bowtie2.py -> build/lib/genomepy/plugins copying genomepy/plugins/hisat2.py -> build/lib/genomepy/plugins copying genomepy/plugins/gmap.py -> build/lib/genomepy/plugins copying genomepy/plugins/minimap2.py -> build/lib/genomepy/plugins creating build/lib/genomepy/cfg copying genomepy/cfg/default.yaml -> build/lib/genomepy/cfg installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/__about__.py -> build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/exceptions.py -> build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/utils.py -> build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/__init__.py -> build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/cli.py -> build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/functions.py -> build/bdist.linux-armv7l/wheel/genomepy creating build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/sizes.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/blacklist.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/gaps.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/bwa.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/bowtie2.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/hisat2.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/gmap.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins copying build/lib/genomepy/plugins/minimap2.py -> build/bdist.linux-armv7l/wheel/genomepy/plugins creating build/bdist.linux-armv7l/wheel/genomepy/cfg copying build/lib/genomepy/cfg/default.yaml -> build/bdist.linux-armv7l/wheel/genomepy/cfg copying build/lib/genomepy/plugin.py -> build/bdist.linux-armv7l/wheel/genomepy copying build/lib/genomepy/provider.py -> build/bdist.linux-armv7l/wheel/genomepy running install_egg_info running egg_info writing dependency_links to genomepy.egg-info/dependency_links.txt writing top-level names to genomepy.egg-info/top_level.txt writing genomepy.egg-info/PKG-INFO writing requirements to genomepy.egg-info/requires.txt writing entry points to genomepy.egg-info/entry_points.txt reading manifest file 'genomepy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'genomepy.egg-info/SOURCES.txt' Copying genomepy.egg-info to build/bdist.linux-armv7l/wheel/genomepy-0.6.0-py3.4.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/genomepy-0.6.0.dist-info/WHEEL creating '/tmp/pip-wheel-dljvt_g9/genomepy-0.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'genomepy/__about__.py' adding 'genomepy/__init__.py' adding 'genomepy/cli.py' adding 'genomepy/exceptions.py' adding 'genomepy/functions.py' adding 'genomepy/plugin.py' adding 'genomepy/provider.py' adding 'genomepy/utils.py' adding 'genomepy/cfg/default.yaml' adding 'genomepy/plugins/__init__.py' adding 'genomepy/plugins/blacklist.py' adding 'genomepy/plugins/bowtie2.py' adding 'genomepy/plugins/bwa.py' adding 'genomepy/plugins/gaps.py' adding 'genomepy/plugins/gmap.py' adding 'genomepy/plugins/hisat2.py' adding 'genomepy/plugins/minimap2.py' adding 'genomepy/plugins/sizes.py' adding 'genomepy-0.6.0.dist-info/LICENSE' adding 'genomepy-0.6.0.dist-info/METADATA' adding 'genomepy-0.6.0.dist-info/WHEEL' adding 'genomepy-0.6.0.dist-info/entry_points.txt' adding 'genomepy-0.6.0.dist-info/top_level.txt' adding 'genomepy-0.6.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for genomepy: finished with status 'done' Stored in directory: /tmp/tmp35empiy3 Successfully built genomepy Cleaning up... Removing source in /tmp/pip-wheel-2aipo7a5/genomepy Removed build tracker '/tmp/pip-req-tracker-wbwppsho'