Created temporary directory: /tmp/pip-ephem-wheel-cache-pry1fr33 Created temporary directory: /tmp/pip-req-tracker-nbamfs2d Created requirements tracker '/tmp/pip-req-tracker-nbamfs2d' Created temporary directory: /tmp/pip-wheel-n52dg0kr Collecting aldy==2.1 1 location(s) to search for versions of aldy: * https://pypi.org/simple/aldy/ Getting page https://pypi.org/simple/aldy/ Analyzing links from page https://pypi.org/simple/aldy/ Found link https://files.pythonhosted.org/packages/f3/56/784a829c0c2a294b9bdd158c5a0dc4227d878859319c2523f8eaa152ba5b/aldy-1.2.tar.gz#sha256=28c6a59a72c30ba4c68e4521e8a95bedc48d81ea3be5606209e0b0109347c04b (from https://pypi.org/simple/aldy/), version: 1.2 Found link https://files.pythonhosted.org/packages/0b/1f/542b32f7a4ceb79eb616f270b003891428871d838c411e15bb17916952c6/aldy-2.0.tar.gz#sha256=d555bc4b030856fe18f3f93327af7678316b9da72b2ccd15680472c97480785c (from https://pypi.org/simple/aldy/), version: 2.0 Found link https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz#sha256=21caaff9feae2c827d230189da9c3f80e908604d08fc24bc1c3a03f580c82260 (from https://pypi.org/simple/aldy/), version: 2.1 Using version 2.1 (newest of versions: 2.1) Created temporary directory: /tmp/pip-unpack-wdnn5rep Downloading https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz (6.0MB) Downloading from URL https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz#sha256=21caaff9feae2c827d230189da9c3f80e908604d08fc24bc1c3a03f580c82260 (from https://pypi.org/simple/aldy/) Added aldy==2.1 from https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz#sha256=21caaff9feae2c827d230189da9c3f80e908604d08fc24bc1c3a03f580c82260 to build tracker '/tmp/pip-req-tracker-nbamfs2d' Running setup.py (path:/tmp/pip-wheel-n52dg0kr/aldy/setup.py) egg_info for package aldy Running command python setup.py egg_info running egg_info creating pip-egg-info/aldy.egg-info writing top-level names to pip-egg-info/aldy.egg-info/top_level.txt writing requirements to pip-egg-info/aldy.egg-info/requires.txt writing dependency_links to pip-egg-info/aldy.egg-info/dependency_links.txt writing pip-egg-info/aldy.egg-info/PKG-INFO writing entry points to pip-egg-info/aldy.egg-info/entry_points.txt writing manifest file 'pip-egg-info/aldy.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/aldy.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/aldy.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-n52dg0kr/aldy has version 2.1, which satisfies requirement aldy==2.1 from https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz#sha256=21caaff9feae2c827d230189da9c3f80e908604d08fc24bc1c3a03f580c82260 Removed aldy==2.1 from https://files.pythonhosted.org/packages/79/d4/f42e18b2bca8994ed0246a180feeaeeae2e972390b49095dfb84aa4e4911/aldy-2.1.tar.gz#sha256=21caaff9feae2c827d230189da9c3f80e908604d08fc24bc1c3a03f580c82260 from build tracker '/tmp/pip-req-tracker-nbamfs2d' Building wheels for collected packages: aldy Created temporary directory: /tmp/pip-wheel-h3112zuq Running setup.py bdist_wheel for aldy: started Destination directory: /tmp/pip-wheel-h3112zuq Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-n52dg0kr/aldy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-h3112zuq running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/aldy copying aldy/version.py -> build/lib/aldy copying aldy/diplotype.py -> build/lib/aldy copying aldy/lpinterface.py -> build/lib/aldy copying aldy/common.py -> build/lib/aldy copying aldy/remap.py -> build/lib/aldy copying aldy/gene.py -> build/lib/aldy copying aldy/solutions.py -> build/lib/aldy copying aldy/sam.py -> build/lib/aldy copying aldy/minor.py -> build/lib/aldy copying aldy/major.py -> build/lib/aldy copying aldy/cn.py -> build/lib/aldy copying aldy/__main__.py -> build/lib/aldy copying aldy/__init__.py -> build/lib/aldy copying aldy/coverage.py -> build/lib/aldy copying aldy/genotype.py -> build/lib/aldy creating build/lib/aldy/resources copying aldy/resources/__init__.py -> build/lib/aldy/resources creating build/lib/aldy/tests copying aldy/tests/test_diplotype_real.py -> build/lib/aldy/tests copying aldy/tests/conftest.py -> build/lib/aldy/tests copying aldy/tests/test_major_real.py -> build/lib/aldy/tests copying aldy/tests/test_gene.py -> build/lib/aldy/tests copying aldy/tests/test_major_synthetic.py -> build/lib/aldy/tests copying aldy/tests/test_cn_real.py -> build/lib/aldy/tests copying aldy/tests/test_full.py -> build/lib/aldy/tests copying aldy/tests/__init__.py -> build/lib/aldy/tests copying aldy/tests/test_diplotype_synthetic.py -> build/lib/aldy/tests copying aldy/tests/test_minor_synthetic.py -> build/lib/aldy/tests copying aldy/tests/test_minor_real.py -> build/lib/aldy/tests copying aldy/tests/test_paper.py -> build/lib/aldy/tests copying aldy/tests/test_cn_synthetic.py -> build/lib/aldy/tests creating build/lib/aldy/resources/genes copying aldy/resources/genes/__init__.py -> build/lib/aldy/resources/genes creating build/lib/aldy/resources/profiles copying aldy/resources/profiles/__init__.py -> build/lib/aldy/resources/profiles creating build/lib/aldy/tests/resources copying aldy/tests/resources/__init__.py -> build/lib/aldy/tests/resources copying aldy/resources/LICENSE.rst -> build/lib/aldy/resources copying aldy/tests/toy.yml -> build/lib/aldy/tests copying aldy/resources/genes/cyp2c8.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2c19.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp3a4.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/tpmt.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp3a5.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/dpyd.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2c9.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2a6.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp4f2.yml -> build/lib/aldy/resources/genes copying aldy/resources/genes/cyp2d6.yml -> build/lib/aldy/resources/genes copying aldy/resources/profiles/pgrnseq-v1.profile -> build/lib/aldy/resources/profiles copying aldy/resources/profiles/illumina.profile -> build/lib/aldy/resources/profiles copying aldy/resources/profiles/pgrnseq-v2.profile -> build/lib/aldy/resources/profiles copying aldy/tests/resources/data-pgx2.json -> build/lib/aldy/tests/resources copying aldy/tests/resources/data-illumina.json -> build/lib/aldy/tests/resources copying aldy/tests/resources/data-pgx1.json -> build/lib/aldy/tests/resources copying aldy/tests/resources/NA10860.bai -> build/lib/aldy/tests/resources copying aldy/tests/resources/NA10860.bam -> build/lib/aldy/tests/resources copying aldy/tests/resources/HARD.dump -> build/lib/aldy/tests/resources copying aldy/tests/resources/NA10860.out.expected -> build/lib/aldy/tests/resources installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/version.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/diplotype.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/lpinterface.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/common.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/remap.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/gene.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/solutions.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/sam.py -> build/bdist.linux-armv7l/wheel/aldy creating build/bdist.linux-armv7l/wheel/aldy/resources creating build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2c8.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2c19.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp3a4.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/tpmt.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp3a5.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/dpyd.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2c9.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2a6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp4f2.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/genes/cyp2d6.yml -> build/bdist.linux-armv7l/wheel/aldy/resources/genes copying build/lib/aldy/resources/LICENSE.rst -> build/bdist.linux-armv7l/wheel/aldy/resources copying build/lib/aldy/resources/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources creating build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/pgrnseq-v1.profile -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/illumina.profile -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/resources/profiles/pgrnseq-v2.profile -> build/bdist.linux-armv7l/wheel/aldy/resources/profiles copying build/lib/aldy/minor.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/major.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/cn.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/__main__.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/__init__.py -> build/bdist.linux-armv7l/wheel/aldy creating build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_diplotype_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/toy.yml -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/conftest.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_major_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/aldy/tests creating build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/data-pgx2.json -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/NA10860.bam -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/NA10860.bai -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/data-illumina.json -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/data-pgx1.json -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/NA10860.out.expected -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/resources/HARD.dump -> build/bdist.linux-armv7l/wheel/aldy/tests/resources copying build/lib/aldy/tests/test_major_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_cn_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_full.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/__init__.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_diplotype_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_minor_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_minor_real.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_paper.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/tests/test_cn_synthetic.py -> build/bdist.linux-armv7l/wheel/aldy/tests copying build/lib/aldy/coverage.py -> build/bdist.linux-armv7l/wheel/aldy copying build/lib/aldy/genotype.py -> build/bdist.linux-armv7l/wheel/aldy running install_egg_info running egg_info writing aldy.egg-info/PKG-INFO writing top-level names to aldy.egg-info/top_level.txt writing requirements to aldy.egg-info/requires.txt writing dependency_links to aldy.egg-info/dependency_links.txt writing entry points to aldy.egg-info/entry_points.txt reading manifest file 'aldy.egg-info/SOURCES.txt' writing manifest file 'aldy.egg-info/SOURCES.txt' Copying aldy.egg-info to build/bdist.linux-armv7l/wheel/aldy-2.1-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/aldy-2.1.dist-info/WHEEL creating '/tmp/pip-wheel-h3112zuq/aldy-2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'aldy/__init__.py' adding 'aldy/__main__.py' adding 'aldy/cn.py' adding 'aldy/common.py' adding 'aldy/coverage.py' adding 'aldy/diplotype.py' adding 'aldy/gene.py' adding 'aldy/genotype.py' adding 'aldy/lpinterface.py' adding 'aldy/major.py' adding 'aldy/minor.py' adding 'aldy/remap.py' adding 'aldy/sam.py' adding 'aldy/solutions.py' adding 'aldy/version.py' adding 'aldy/resources/LICENSE.rst' adding 'aldy/resources/__init__.py' adding 'aldy/resources/genes/__init__.py' adding 'aldy/resources/genes/cyp2a6.yml' adding 'aldy/resources/genes/cyp2c19.yml' adding 'aldy/resources/genes/cyp2c8.yml' adding 'aldy/resources/genes/cyp2c9.yml' adding 'aldy/resources/genes/cyp2d6.yml' adding 'aldy/resources/genes/cyp3a4.yml' adding 'aldy/resources/genes/cyp3a5.yml' adding 'aldy/resources/genes/cyp4f2.yml' adding 'aldy/resources/genes/dpyd.yml' adding 'aldy/resources/genes/tpmt.yml' adding 'aldy/resources/profiles/__init__.py' adding 'aldy/resources/profiles/illumina.profile' adding 'aldy/resources/profiles/pgrnseq-v1.profile' adding 'aldy/resources/profiles/pgrnseq-v2.profile' adding 'aldy/tests/__init__.py' adding 'aldy/tests/conftest.py' adding 'aldy/tests/test_cn_real.py' adding 'aldy/tests/test_cn_synthetic.py' adding 'aldy/tests/test_diplotype_real.py' adding 'aldy/tests/test_diplotype_synthetic.py' adding 'aldy/tests/test_full.py' adding 'aldy/tests/test_gene.py' adding 'aldy/tests/test_major_real.py' adding 'aldy/tests/test_major_synthetic.py' adding 'aldy/tests/test_minor_real.py' adding 'aldy/tests/test_minor_synthetic.py' adding 'aldy/tests/test_paper.py' adding 'aldy/tests/toy.yml' adding 'aldy/tests/resources/HARD.dump' adding 'aldy/tests/resources/NA10860.bai' adding 'aldy/tests/resources/NA10860.bam' adding 'aldy/tests/resources/NA10860.out.expected' adding 'aldy/tests/resources/__init__.py' adding 'aldy/tests/resources/data-illumina.json' adding 'aldy/tests/resources/data-pgx1.json' adding 'aldy/tests/resources/data-pgx2.json' adding 'aldy-2.1.dist-info/METADATA' adding 'aldy-2.1.dist-info/WHEEL' adding 'aldy-2.1.dist-info/entry_points.txt' adding 'aldy-2.1.dist-info/top_level.txt' adding 'aldy-2.1.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for aldy: finished with status 'done' Stored in directory: /tmp/tmp1lnr1xhd Successfully built aldy Cleaning up... Removing source in /tmp/pip-wheel-n52dg0kr/aldy Removed build tracker '/tmp/pip-req-tracker-nbamfs2d'