Created temporary directory: /tmp/pip-ephem-wheel-cache-memjr8oe
Created temporary directory: /tmp/pip-req-tracker-z3fbmgc2
Created requirements tracker '/tmp/pip-req-tracker-z3fbmgc2'
Created temporary directory: /tmp/pip-wheel-ia7h90_n
Collecting topaz-em==0.2.2
  1 location(s) to search for versions of topaz-em:
  * https://pypi.org/simple/topaz-em/
  Getting page https://pypi.org/simple/topaz-em/
  Analyzing links from page https://pypi.org/simple/topaz-em/
    Found link https://files.pythonhosted.org/packages/9a/cb/4f17f2c95da5e817fad0519039e7c11602b71852a4641109d9e482b6f559/topaz-em-0.2.0.tar.gz#sha256=4b9b43563633e8fd1ea0ce530eb8fef621709ec7e8b3354ed948b3f7020c7258 (from https://pypi.org/simple/topaz-em/), version: 0.2.0
    Found link https://files.pythonhosted.org/packages/f0/5f/2bd1bdc443054bf8d70a1502c93eb7ed4dd08cf155fb5bab28d1a19a4c8e/topaz_em-0.2.0-py2.py3-none-any.whl#sha256=1d1baffd7a4784078276df7728dc046ffaac7af882967260db369d674bc262f3 (from https://pypi.org/simple/topaz-em/), version: 0.2.0
    Found link https://files.pythonhosted.org/packages/25/f2/4917563aef1156875d8d72a5bf581c03feb1dcafc9a946f9816d93d376b2/topaz-em-0.2.1.tar.gz#sha256=39ec63e582453cc748ccb67b5ce4b9da12f86a06e934a6e1eea3a4d7b4b0a482 (from https://pypi.org/simple/topaz-em/), version: 0.2.1
    Found link https://files.pythonhosted.org/packages/c8/df/23eca0fa031a43346820d711deb20210609c29eeacac2c3b4bb872e0b9c3/topaz_em-0.2.1-py2.py3-none-any.whl#sha256=b2f6e70ec7312a3436aef3c8b489653949ebc068c5cbb4040faafbec7c6babaa (from https://pypi.org/simple/topaz-em/), version: 0.2.1
    Found link https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz#sha256=c2211fde645cb781d1e47f44d5bd396da749f1f81cc4a66d96148326f3b5a4bc (from https://pypi.org/simple/topaz-em/), version: 0.2.2
  Using version 0.2.2 (newest of versions: 0.2.2)
  Created temporary directory: /tmp/pip-unpack-3wj_9z6q
  Downloading https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz (14.5MB)
  Downloading from URL https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz#sha256=c2211fde645cb781d1e47f44d5bd396da749f1f81cc4a66d96148326f3b5a4bc (from https://pypi.org/simple/topaz-em/)
  Added topaz-em==0.2.2 from https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz#sha256=c2211fde645cb781d1e47f44d5bd396da749f1f81cc4a66d96148326f3b5a4bc to build tracker '/tmp/pip-req-tracker-z3fbmgc2'
  Running setup.py (path:/tmp/pip-wheel-ia7h90_n/topaz-em/setup.py) egg_info for package topaz-em
    Running command python setup.py egg_info
    running egg_info
    creating pip-egg-info/topaz_em.egg-info
    writing dependency_links to pip-egg-info/topaz_em.egg-info/dependency_links.txt
    writing top-level names to pip-egg-info/topaz_em.egg-info/top_level.txt
    writing requirements to pip-egg-info/topaz_em.egg-info/requires.txt
    writing pip-egg-info/topaz_em.egg-info/PKG-INFO
    writing entry points to pip-egg-info/topaz_em.egg-info/entry_points.txt
    writing manifest file 'pip-egg-info/topaz_em.egg-info/SOURCES.txt'
    reading manifest file 'pip-egg-info/topaz_em.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    writing manifest file 'pip-egg-info/topaz_em.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-ia7h90_n/topaz-em has version 0.2.2, which satisfies requirement topaz-em==0.2.2 from https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz#sha256=c2211fde645cb781d1e47f44d5bd396da749f1f81cc4a66d96148326f3b5a4bc
  Removed topaz-em==0.2.2 from https://files.pythonhosted.org/packages/c2/dc/9901ee176435acfac048a42053559294bb948b37e9be79b7435d5ed7a4c8/topaz-em-0.2.2.tar.gz#sha256=c2211fde645cb781d1e47f44d5bd396da749f1f81cc4a66d96148326f3b5a4bc from build tracker '/tmp/pip-req-tracker-z3fbmgc2'
Building wheels for collected packages: topaz-em
  Created temporary directory: /tmp/pip-wheel-gzc9g5df
  Running setup.py bdist_wheel for topaz-em: started
  Destination directory: /tmp/pip-wheel-gzc9g5df
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-ia7h90_n/topaz-em/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-gzc9g5df
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/topaz
  copying topaz/main.py -> build/lib/topaz
  copying topaz/stats.py -> build/lib/topaz
  copying topaz/mrc.py -> build/lib/topaz
  copying topaz/denoise.py -> build/lib/topaz
  copying topaz/__init__.py -> build/lib/topaz
  copying topaz/metrics.py -> build/lib/topaz
  copying topaz/predict.py -> build/lib/topaz
  copying topaz/methods.py -> build/lib/topaz
  copying topaz/_version.py -> build/lib/topaz
  copying topaz/algorithms.py -> build/lib/topaz
  creating build/lib/topaz/transform
  copying topaz/transform/scaled_gaussian_mixture.py -> build/lib/topaz/transform
  copying topaz/transform/__init__.py -> build/lib/topaz/transform
  creating build/lib/topaz/commands
  copying topaz/commands/precision_recall_curve.py -> build/lib/topaz/commands
  copying topaz/commands/downsample.py -> build/lib/topaz/commands
  copying topaz/commands/train.py -> build/lib/topaz/commands
  copying topaz/commands/split.py -> build/lib/topaz/commands
  copying topaz/commands/train_test_split.py -> build/lib/topaz/commands
  copying topaz/commands/coordinates_to_eman2_json.py -> build/lib/topaz/commands
  copying topaz/commands/extract.py -> build/lib/topaz/commands
  copying topaz/commands/denoise.py -> build/lib/topaz/commands
  copying topaz/commands/__init__.py -> build/lib/topaz/commands
  copying topaz/commands/segment.py -> build/lib/topaz/commands
  copying topaz/commands/gui.py -> build/lib/topaz/commands
  copying topaz/commands/convert.py -> build/lib/topaz/commands
  copying topaz/commands/boxes_to_coordinates.py -> build/lib/topaz/commands
  copying topaz/commands/particle_stack.py -> build/lib/topaz/commands
  copying topaz/commands/preprocess.py -> build/lib/topaz/commands
  copying topaz/commands/star_particles_threshold.py -> build/lib/topaz/commands
  copying topaz/commands/star_to_coordinates.py -> build/lib/topaz/commands
  copying topaz/commands/coordinates_to_boxes.py -> build/lib/topaz/commands
  copying topaz/commands/coordinates_to_star.py -> build/lib/topaz/commands
  copying topaz/commands/scale_coordinates.py -> build/lib/topaz/commands
  copying topaz/commands/normalize.py -> build/lib/topaz/commands
  creating build/lib/topaz/utils
  copying topaz/utils/__init__.py -> build/lib/topaz/utils
  copying topaz/utils/image.py -> build/lib/topaz/utils
  copying topaz/utils/printing.py -> build/lib/topaz/utils
  copying topaz/utils/picks.py -> build/lib/topaz/utils
  copying topaz/utils/star.py -> build/lib/topaz/utils
  copying topaz/utils/conversions.py -> build/lib/topaz/utils
  copying topaz/utils/files.py -> build/lib/topaz/utils
  creating build/lib/topaz/model
  copying topaz/model/utils.py -> build/lib/topaz/model
  copying topaz/model/__init__.py -> build/lib/topaz/model
  copying topaz/model/factory.py -> build/lib/topaz/model
  copying topaz/model/generative.py -> build/lib/topaz/model
  copying topaz/model/classifier.py -> build/lib/topaz/model
  creating build/lib/topaz/utils/data
  copying topaz/utils/data/__init__.py -> build/lib/topaz/utils/data
  copying topaz/utils/data/loader.py -> build/lib/topaz/utils/data
  copying topaz/utils/data/coordinates.py -> build/lib/topaz/utils/data
  copying topaz/utils/data/sampler.py -> build/lib/topaz/utils/data
  copying topaz/utils/data/partition.py -> build/lib/topaz/utils/data
  creating build/lib/topaz/model/features
  copying topaz/model/features/basic.py -> build/lib/topaz/model/features
  copying topaz/model/features/densenet.py -> build/lib/topaz/model/features
  copying topaz/model/features/__init__.py -> build/lib/topaz/model/features
  copying topaz/model/features/resnet.py -> build/lib/topaz/model/features
  running egg_info
  writing dependency_links to topaz_em.egg-info/dependency_links.txt
  writing topaz_em.egg-info/PKG-INFO
  writing entry points to topaz_em.egg-info/entry_points.txt
  writing top-level names to topaz_em.egg-info/top_level.txt
  writing requirements to topaz_em.egg-info/requires.txt
  reading manifest file 'topaz_em.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  writing manifest file 'topaz_em.egg-info/SOURCES.txt'
  creating build/lib/topaz/gui
  copying topaz/gui/topaz.html -> build/lib/topaz/gui
  creating build/lib/topaz/pretrained
  creating build/lib/topaz/pretrained/denoise
  copying topaz/pretrained/denoise/unet_L0_v1.sav -> build/lib/topaz/pretrained/denoise
  copying topaz/pretrained/denoise/unet_L1_v1.sav -> build/lib/topaz/pretrained/denoise
  copying topaz/pretrained/denoise/unet_L2_v1.sav -> build/lib/topaz/pretrained/denoise
  copying topaz/pretrained/denoise/unet_L2_v2.sav -> build/lib/topaz/pretrained/denoise
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/main.py -> build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/stats.py -> build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/mrc.py -> build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/denoise.py -> build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/__init__.py -> build/bdist.linux-armv7l/wheel/topaz
  creating build/bdist.linux-armv7l/wheel/topaz/pretrained
  creating build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
  copying build/lib/topaz/pretrained/denoise/unet_L2_v1.sav -> build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
  copying build/lib/topaz/pretrained/denoise/unet_L1_v1.sav -> build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
  copying build/lib/topaz/pretrained/denoise/unet_L0_v1.sav -> build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
  copying build/lib/topaz/pretrained/denoise/unet_L2_v2.sav -> build/bdist.linux-armv7l/wheel/topaz/pretrained/denoise
  copying build/lib/topaz/metrics.py -> build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/predict.py -> build/bdist.linux-armv7l/wheel/topaz
  creating build/bdist.linux-armv7l/wheel/topaz/transform
  copying build/lib/topaz/transform/scaled_gaussian_mixture.py -> build/bdist.linux-armv7l/wheel/topaz/transform
  copying build/lib/topaz/transform/__init__.py -> build/bdist.linux-armv7l/wheel/topaz/transform
  creating build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/precision_recall_curve.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/downsample.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/train.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/split.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/train_test_split.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/coordinates_to_eman2_json.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/extract.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/denoise.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/__init__.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/segment.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/gui.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/convert.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/boxes_to_coordinates.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/particle_stack.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/star_particles_threshold.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/star_to_coordinates.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/coordinates_to_boxes.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/coordinates_to_star.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/scale_coordinates.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/commands/normalize.py -> build/bdist.linux-armv7l/wheel/topaz/commands
  copying build/lib/topaz/methods.py -> build/bdist.linux-armv7l/wheel/topaz
  copying build/lib/topaz/_version.py -> build/bdist.linux-armv7l/wheel/topaz
  creating build/bdist.linux-armv7l/wheel/topaz/utils
  creating build/bdist.linux-armv7l/wheel/topaz/utils/data
  copying build/lib/topaz/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/topaz/utils/data
  copying build/lib/topaz/utils/data/loader.py -> build/bdist.linux-armv7l/wheel/topaz/utils/data
  copying build/lib/topaz/utils/data/coordinates.py -> build/bdist.linux-armv7l/wheel/topaz/utils/data
  copying build/lib/topaz/utils/data/sampler.py -> build/bdist.linux-armv7l/wheel/topaz/utils/data
  copying build/lib/topaz/utils/data/partition.py -> build/bdist.linux-armv7l/wheel/topaz/utils/data
  copying build/lib/topaz/utils/__init__.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/utils/image.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/utils/printing.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/utils/picks.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/utils/star.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/utils/conversions.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/utils/files.py -> build/bdist.linux-armv7l/wheel/topaz/utils
  copying build/lib/topaz/algorithms.py -> build/bdist.linux-armv7l/wheel/topaz
  creating build/bdist.linux-armv7l/wheel/topaz/model
  copying build/lib/topaz/model/utils.py -> build/bdist.linux-armv7l/wheel/topaz/model
  copying build/lib/topaz/model/__init__.py -> build/bdist.linux-armv7l/wheel/topaz/model
  copying build/lib/topaz/model/factory.py -> build/bdist.linux-armv7l/wheel/topaz/model
  copying build/lib/topaz/model/generative.py -> build/bdist.linux-armv7l/wheel/topaz/model
  creating build/bdist.linux-armv7l/wheel/topaz/model/features
  copying build/lib/topaz/model/features/basic.py -> build/bdist.linux-armv7l/wheel/topaz/model/features
  copying build/lib/topaz/model/features/densenet.py -> build/bdist.linux-armv7l/wheel/topaz/model/features
  copying build/lib/topaz/model/features/__init__.py -> build/bdist.linux-armv7l/wheel/topaz/model/features
  copying build/lib/topaz/model/features/resnet.py -> build/bdist.linux-armv7l/wheel/topaz/model/features
  copying build/lib/topaz/model/classifier.py -> build/bdist.linux-armv7l/wheel/topaz/model
  creating build/bdist.linux-armv7l/wheel/topaz/gui
  copying build/lib/topaz/gui/topaz.html -> build/bdist.linux-armv7l/wheel/topaz/gui
  running install_egg_info
  Copying topaz_em.egg-info to build/bdist.linux-armv7l/wheel/topaz_em-0.2.2-py3.4.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/topaz_em-0.2.2.dist-info/WHEEL
  creating '/tmp/pip-wheel-gzc9g5df/topaz_em-0.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
  adding 'topaz/__init__.py'
  adding 'topaz/_version.py'
  adding 'topaz/algorithms.py'
  adding 'topaz/denoise.py'
  adding 'topaz/main.py'
  adding 'topaz/methods.py'
  adding 'topaz/metrics.py'
  adding 'topaz/mrc.py'
  adding 'topaz/predict.py'
  adding 'topaz/stats.py'
  adding 'topaz/commands/__init__.py'
  adding 'topaz/commands/boxes_to_coordinates.py'
  adding 'topaz/commands/convert.py'
  adding 'topaz/commands/coordinates_to_boxes.py'
  adding 'topaz/commands/coordinates_to_eman2_json.py'
  adding 'topaz/commands/coordinates_to_star.py'
  adding 'topaz/commands/denoise.py'
  adding 'topaz/commands/downsample.py'
  adding 'topaz/commands/extract.py'
  adding 'topaz/commands/gui.py'
  adding 'topaz/commands/normalize.py'
  adding 'topaz/commands/particle_stack.py'
  adding 'topaz/commands/precision_recall_curve.py'
  adding 'topaz/commands/preprocess.py'
  adding 'topaz/commands/scale_coordinates.py'
  adding 'topaz/commands/segment.py'
  adding 'topaz/commands/split.py'
  adding 'topaz/commands/star_particles_threshold.py'
  adding 'topaz/commands/star_to_coordinates.py'
  adding 'topaz/commands/train.py'
  adding 'topaz/commands/train_test_split.py'
  adding 'topaz/gui/topaz.html'
  adding 'topaz/model/__init__.py'
  adding 'topaz/model/classifier.py'
  adding 'topaz/model/factory.py'
  adding 'topaz/model/generative.py'
  adding 'topaz/model/utils.py'
  adding 'topaz/model/features/__init__.py'
  adding 'topaz/model/features/basic.py'
  adding 'topaz/model/features/densenet.py'
  adding 'topaz/model/features/resnet.py'
  adding 'topaz/pretrained/denoise/unet_L0_v1.sav'
  adding 'topaz/pretrained/denoise/unet_L1_v1.sav'
  adding 'topaz/pretrained/denoise/unet_L2_v1.sav'
  adding 'topaz/pretrained/denoise/unet_L2_v2.sav'
  adding 'topaz/transform/__init__.py'
  adding 'topaz/transform/scaled_gaussian_mixture.py'
  adding 'topaz/utils/__init__.py'
  adding 'topaz/utils/conversions.py'
  adding 'topaz/utils/files.py'
  adding 'topaz/utils/image.py'
  adding 'topaz/utils/picks.py'
  adding 'topaz/utils/printing.py'
  adding 'topaz/utils/star.py'
  adding 'topaz/utils/data/__init__.py'
  adding 'topaz/utils/data/coordinates.py'
  adding 'topaz/utils/data/loader.py'
  adding 'topaz/utils/data/partition.py'
  adding 'topaz/utils/data/sampler.py'
  adding 'topaz_em-0.2.2.dist-info/METADATA'
  adding 'topaz_em-0.2.2.dist-info/WHEEL'
  adding 'topaz_em-0.2.2.dist-info/entry_points.txt'
  adding 'topaz_em-0.2.2.dist-info/top_level.txt'
  adding 'topaz_em-0.2.2.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for topaz-em: finished with status 'done'
  Stored in directory: /tmp/tmpifsvpt4y
Successfully built topaz-em
Cleaning up...
  Removing source in /tmp/pip-wheel-ia7h90_n/topaz-em
Removed build tracker '/tmp/pip-req-tracker-z3fbmgc2'