Created temporary directory: /tmp/pip-ephem-wheel-cache-ojg1ltkm
Created temporary directory: /tmp/pip-req-tracker-cj91z2ky
Created requirements tracker '/tmp/pip-req-tracker-cj91z2ky'
Created temporary directory: /tmp/pip-wheel-dbc4v0i8
Collecting GenomeTreeTk==0.0.54
  1 location(s) to search for versions of GenomeTreeTk:
  * https://pypi.org/simple/genometreetk/
  Getting page https://pypi.org/simple/genometreetk/
  Analyzing links from page https://pypi.org/simple/genometreetk/
    Found link https://files.pythonhosted.org/packages/5e/b0/ebf937461322f1c319bebf47d609459104c5f1961eb95ad3c2cc953ded47/GenomeTreeTk-0.0.4.tar.gz#sha256=56d61904b388982e763720e03f3ff3a251016febde5aabf9e72faf4522f31f4f (from https://pypi.org/simple/genometreetk/), version: 0.0.4
    Found link https://files.pythonhosted.org/packages/cf/87/638d4e64c4f511abd4336b88ca4ff4b426777147a338a70b5867807a5278/GenomeTreeTk-0.0.18.tar.gz#sha256=8ad76555c1572344cf32a041073e1dc9b410b41028ee4220b7759763c16209bc (from https://pypi.org/simple/genometreetk/), version: 0.0.18
    Found link https://files.pythonhosted.org/packages/87/2c/f5c06ec3ef8184f44a9e1a36fe10c0bc1c280b97c0c264586441a3521ca8/GenomeTreeTk-0.0.21.tar.gz#sha256=bbd011e72971e1281a9f3b5dde6f17590ba7963bbd64c306a2ec2d0f77c26479 (from https://pypi.org/simple/genometreetk/), version: 0.0.21
    Found link https://files.pythonhosted.org/packages/29/96/33971faf54258e25d6ecf64eb8f28cd08a9adb1c3fbb478dd01e06ac2f83/GenomeTreeTk-0.0.31.tar.gz#sha256=0d647769b1aa5b9af828e4eea3e85d824485e9da20b0b66117256c24228ed531 (from https://pypi.org/simple/genometreetk/), version: 0.0.31
    Found link https://files.pythonhosted.org/packages/17/1a/5e1043083d53d846a32684d8d932ef849ad400f5a673f59ee60dd39ce250/GenomeTreeTk-0.0.32.tar.gz#sha256=0cc394174dc13ccadbf98c345add23698a9726dccbdc18519695c93b568958c2 (from https://pypi.org/simple/genometreetk/), version: 0.0.32
    Found link https://files.pythonhosted.org/packages/4b/cc/7bd02ea62b4ec9f4cbfc19212734eadd2973e17833fd4d144c0122691fa8/GenomeTreeTk-0.0.36.tar.gz#sha256=f71569612765c4be50962915bd41d0407fa425a3a14fcba04303995b91d1d3ad (from https://pypi.org/simple/genometreetk/), version: 0.0.36
    Found link https://files.pythonhosted.org/packages/01/44/6a37ff701b59a0b1ca7100574aa4337ed28aa94d434f311c592ae2c3812d/GenomeTreeTk-0.0.37.tar.gz#sha256=645e3f92373d2bd05bd430cfca84874a731820ca0f1da26b190db791e153028c (from https://pypi.org/simple/genometreetk/), version: 0.0.37
    Found link https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz#sha256=2947db56a1b8e9fd9e8d7f1f73fa75d1af67ee44ff8a058a18c70dc544d36b6b (from https://pypi.org/simple/genometreetk/), version: 0.0.54
  Using version 0.0.54 (newest of versions: 0.0.54)
  Created temporary directory: /tmp/pip-unpack-t4pq_99a
  Downloading https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz (101kB)
  Downloading from URL https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz#sha256=2947db56a1b8e9fd9e8d7f1f73fa75d1af67ee44ff8a058a18c70dc544d36b6b (from https://pypi.org/simple/genometreetk/)
  Added GenomeTreeTk==0.0.54 from https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz#sha256=2947db56a1b8e9fd9e8d7f1f73fa75d1af67ee44ff8a058a18c70dc544d36b6b to build tracker '/tmp/pip-req-tracker-cj91z2ky'
  Running setup.py (path:/tmp/pip-wheel-dbc4v0i8/GenomeTreeTk/setup.py) egg_info for package GenomeTreeTk
    Running command python setup.py egg_info
    running egg_info
    creating pip-egg-info/GenomeTreeTk.egg-info
    writing dependency_links to pip-egg-info/GenomeTreeTk.egg-info/dependency_links.txt
    writing requirements to pip-egg-info/GenomeTreeTk.egg-info/requires.txt
    writing pip-egg-info/GenomeTreeTk.egg-info/PKG-INFO
    writing top-level names to pip-egg-info/GenomeTreeTk.egg-info/top_level.txt
    writing manifest file 'pip-egg-info/GenomeTreeTk.egg-info/SOURCES.txt'
    reading manifest file 'pip-egg-info/GenomeTreeTk.egg-info/SOURCES.txt'
    writing manifest file 'pip-egg-info/GenomeTreeTk.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-dbc4v0i8/GenomeTreeTk has version 0.0.54, which satisfies requirement GenomeTreeTk==0.0.54 from https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz#sha256=2947db56a1b8e9fd9e8d7f1f73fa75d1af67ee44ff8a058a18c70dc544d36b6b
  Removed GenomeTreeTk==0.0.54 from https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz#sha256=2947db56a1b8e9fd9e8d7f1f73fa75d1af67ee44ff8a058a18c70dc544d36b6b from build tracker '/tmp/pip-req-tracker-cj91z2ky'
Building wheels for collected packages: GenomeTreeTk
  Created temporary directory: /tmp/pip-wheel-27h5yxi7
  Running setup.py bdist_wheel for GenomeTreeTk: started
  Destination directory: /tmp/pip-wheel-27h5yxi7
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-dbc4v0i8/GenomeTreeTk/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-27h5yxi7
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/genometreetk
  copying genometreetk/ncbi.py -> build/lib/genometreetk
  copying genometreetk/ani.py -> build/lib/genometreetk
  copying genometreetk/infer_workflow.py -> build/lib/genometreetk
  copying genometreetk/common.py -> build/lib/genometreetk
  copying genometreetk/exceptions.py -> build/lib/genometreetk
  copying genometreetk/tree_support.py -> build/lib/genometreetk
  copying genometreetk/aai.py -> build/lib/genometreetk
  copying genometreetk/qc_genomes.py -> build/lib/genometreetk
  copying genometreetk/jackknife_taxa.py -> build/lib/genometreetk
  copying genometreetk/cluster_named_types.py -> build/lib/genometreetk
  copying genometreetk/rna_workflow.py -> build/lib/genometreetk
  copying genometreetk/mash.py -> build/lib/genometreetk
  copying genometreetk/cluster_stats.py -> build/lib/genometreetk
  copying genometreetk/cluster_de_novo.py -> build/lib/genometreetk
  copying genometreetk/reroot_tree.py -> build/lib/genometreetk
  copying genometreetk/arb.py -> build/lib/genometreetk
  copying genometreetk/phylogenetic_diversity.py -> build/lib/genometreetk
  copying genometreetk/bootstrap.py -> build/lib/genometreetk
  copying genometreetk/combine_support.py -> build/lib/genometreetk
  copying genometreetk/default_values.py -> build/lib/genometreetk
  copying genometreetk/__init__.py -> build/lib/genometreetk
  copying genometreetk/select_type_genomes.py -> build/lib/genometreetk
  copying genometreetk/jackknife_markers.py -> build/lib/genometreetk
  copying genometreetk/derep_tree.py -> build/lib/genometreetk
  copying genometreetk/assign_genomes.py -> build/lib/genometreetk
  copying genometreetk/main.py -> build/lib/genometreetk
  copying genometreetk/tree_gids.py -> build/lib/genometreetk
  copying genometreetk/ani_cache.py -> build/lib/genometreetk
  copying genometreetk/cluster_user.py -> build/lib/genometreetk
  copying genometreetk/type_genome_utils.py -> build/lib/genometreetk
  creating build/lib/genometreetk/markers
  copying genometreetk/markers/lgt_test.py -> build/lib/genometreetk/markers
  copying genometreetk/markers/infer_markers.py -> build/lib/genometreetk/markers
  copying genometreetk/markers/__init__.py -> build/lib/genometreetk/markers
  copying genometreetk/markers/align_markers.py -> build/lib/genometreetk/markers
  copying genometreetk/VERSION -> build/lib/genometreetk
  running build_scripts
  creating build/scripts-3.4
  copying and adjusting bin/genometreetk -> build/scripts-3.4
  changing mode of build/scripts-3.4/genometreetk from 644 to 755
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/ncbi.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/ani.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/infer_workflow.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/common.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/exceptions.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/tree_support.py -> build/bdist.linux-armv7l/wheel/genometreetk
  creating build/bdist.linux-armv7l/wheel/genometreetk/markers
  copying build/lib/genometreetk/markers/lgt_test.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
  copying build/lib/genometreetk/markers/infer_markers.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
  copying build/lib/genometreetk/markers/__init__.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
  copying build/lib/genometreetk/markers/align_markers.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
  copying build/lib/genometreetk/aai.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/qc_genomes.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/jackknife_taxa.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/VERSION -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/cluster_named_types.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/rna_workflow.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/mash.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/cluster_stats.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/cluster_de_novo.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/arb.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/phylogenetic_diversity.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/bootstrap.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/combine_support.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/default_values.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/__init__.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/select_type_genomes.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/jackknife_markers.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/derep_tree.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/assign_genomes.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/main.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/tree_gids.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/ani_cache.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/cluster_user.py -> build/bdist.linux-armv7l/wheel/genometreetk
  copying build/lib/genometreetk/type_genome_utils.py -> build/bdist.linux-armv7l/wheel/genometreetk
  running install_egg_info
  running egg_info
  creating GenomeTreeTk.egg-info
  writing GenomeTreeTk.egg-info/PKG-INFO
  writing requirements to GenomeTreeTk.egg-info/requires.txt
  writing top-level names to GenomeTreeTk.egg-info/top_level.txt
  writing dependency_links to GenomeTreeTk.egg-info/dependency_links.txt
  writing manifest file 'GenomeTreeTk.egg-info/SOURCES.txt'
  reading manifest file 'GenomeTreeTk.egg-info/SOURCES.txt'
  writing manifest file 'GenomeTreeTk.egg-info/SOURCES.txt'
  Copying GenomeTreeTk.egg-info to build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.0.54-py3.4.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.0.54.data
  creating build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.0.54.data/scripts
  copying build/scripts-3.4/genometreetk -> build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.0.54.data/scripts
  changing mode of build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.0.54.data/scripts/genometreetk to 755
  adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
  creating build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.0.54.dist-info/WHEEL
  creating '/tmp/pip-wheel-27h5yxi7/GenomeTreeTk-0.0.54-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
  adding 'GenomeTreeTk-0.0.54.data/scripts/genometreetk'
  adding 'genometreetk/VERSION'
  adding 'genometreetk/__init__.py'
  adding 'genometreetk/aai.py'
  adding 'genometreetk/ani.py'
  adding 'genometreetk/ani_cache.py'
  adding 'genometreetk/arb.py'
  adding 'genometreetk/assign_genomes.py'
  adding 'genometreetk/bootstrap.py'
  adding 'genometreetk/cluster_de_novo.py'
  adding 'genometreetk/cluster_named_types.py'
  adding 'genometreetk/cluster_stats.py'
  adding 'genometreetk/cluster_user.py'
  adding 'genometreetk/combine_support.py'
  adding 'genometreetk/common.py'
  adding 'genometreetk/default_values.py'
  adding 'genometreetk/derep_tree.py'
  adding 'genometreetk/exceptions.py'
  adding 'genometreetk/infer_workflow.py'
  adding 'genometreetk/jackknife_markers.py'
  adding 'genometreetk/jackknife_taxa.py'
  adding 'genometreetk/main.py'
  adding 'genometreetk/mash.py'
  adding 'genometreetk/ncbi.py'
  adding 'genometreetk/phylogenetic_diversity.py'
  adding 'genometreetk/qc_genomes.py'
  adding 'genometreetk/reroot_tree.py'
  adding 'genometreetk/rna_workflow.py'
  adding 'genometreetk/select_type_genomes.py'
  adding 'genometreetk/tree_gids.py'
  adding 'genometreetk/tree_support.py'
  adding 'genometreetk/type_genome_utils.py'
  adding 'genometreetk/markers/__init__.py'
  adding 'genometreetk/markers/align_markers.py'
  adding 'genometreetk/markers/infer_markers.py'
  adding 'genometreetk/markers/lgt_test.py'
  adding 'GenomeTreeTk-0.0.54.dist-info/LICENSE'
  adding 'GenomeTreeTk-0.0.54.dist-info/METADATA'
  adding 'GenomeTreeTk-0.0.54.dist-info/WHEEL'
  adding 'GenomeTreeTk-0.0.54.dist-info/top_level.txt'
  adding 'GenomeTreeTk-0.0.54.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for GenomeTreeTk: finished with status 'done'
  Stored in directory: /tmp/tmpquyn22d7
Successfully built GenomeTreeTk
Cleaning up...
  Removing source in /tmp/pip-wheel-dbc4v0i8/GenomeTreeTk
Removed build tracker '/tmp/pip-req-tracker-cj91z2ky'