2019-10-29T18:30:07 Created temporary directory: /tmp/pip-ephem-wheel-cache-6wf6rgio
2019-10-29T18:30:07 Created temporary directory: /tmp/pip-req-tracker-0xsvgxll
2019-10-29T18:30:07 Created requirements tracker '/tmp/pip-req-tracker-0xsvgxll'
2019-10-29T18:30:07 Created temporary directory: /tmp/pip-wheel-x_m_hnbv
2019-10-29T18:30:07 Collecting cistem==0.9.0
2019-10-29T18:30:07   1 location(s) to search for versions of cistem:
2019-10-29T18:30:07   * https://pypi.org/simple/cistem/
2019-10-29T18:30:07   Getting page https://pypi.org/simple/cistem/
2019-10-29T18:30:08   Analyzing links from page https://pypi.org/simple/cistem/
2019-10-29T18:30:08     Found link https://files.pythonhosted.org/packages/8a/44/eed9bb6462b9af74ea23ce8a76b396bfa945028cc7da7aa4c4a4547bb10a/cistem-0.9.0.tar.gz#sha256=ec8b23ebf0ddf29f260d37739c854194c68538d4b15b1cf6baa6904db4ce002d (from https://pypi.org/simple/cistem/), version: 0.9.0
2019-10-29T18:30:08   Using version 0.9.0 (newest of versions: 0.9.0)
2019-10-29T18:30:08   Created temporary directory: /tmp/pip-unpack-ydhf6vp6
2019-10-29T18:30:08   Downloading https://files.pythonhosted.org/packages/8a/44/eed9bb6462b9af74ea23ce8a76b396bfa945028cc7da7aa4c4a4547bb10a/cistem-0.9.0.tar.gz (934kB)
2019-10-29T18:30:08   Downloading from URL https://files.pythonhosted.org/packages/8a/44/eed9bb6462b9af74ea23ce8a76b396bfa945028cc7da7aa4c4a4547bb10a/cistem-0.9.0.tar.gz#sha256=ec8b23ebf0ddf29f260d37739c854194c68538d4b15b1cf6baa6904db4ce002d (from https://pypi.org/simple/cistem/)
2019-10-29T18:30:09   Added cistem==0.9.0 from https://files.pythonhosted.org/packages/8a/44/eed9bb6462b9af74ea23ce8a76b396bfa945028cc7da7aa4c4a4547bb10a/cistem-0.9.0.tar.gz#sha256=ec8b23ebf0ddf29f260d37739c854194c68538d4b15b1cf6baa6904db4ce002d to build tracker '/tmp/pip-req-tracker-0xsvgxll'
2019-10-29T18:30:09     Running setup.py (path:/tmp/pip-wheel-x_m_hnbv/cistem/setup.py) egg_info for package cistem
2019-10-29T18:30:09     Running command python setup.py egg_info
2019-10-29T18:30:10     running egg_info
2019-10-29T18:30:10     creating pip-egg-info/cistem.egg-info
2019-10-29T18:30:10     writing pip-egg-info/cistem.egg-info/PKG-INFO
2019-10-29T18:30:10     writing dependency_links to pip-egg-info/cistem.egg-info/dependency_links.txt
2019-10-29T18:30:10     writing top-level names to pip-egg-info/cistem.egg-info/top_level.txt
2019-10-29T18:30:10     writing manifest file 'pip-egg-info/cistem.egg-info/SOURCES.txt'
2019-10-29T18:30:11     reading manifest file 'pip-egg-info/cistem.egg-info/SOURCES.txt'
2019-10-29T18:30:11     writing manifest file 'pip-egg-info/cistem.egg-info/SOURCES.txt'
2019-10-29T18:30:11     /usr/lib/python3.7/distutils/extension.py:131: UserWarning: Unknown Extension options: 'build_dir'
2019-10-29T18:30:11       warnings.warn(msg)
2019-10-29T18:30:11   Source in /tmp/pip-wheel-x_m_hnbv/cistem has version 0.9.0, which satisfies requirement cistem==0.9.0 from https://files.pythonhosted.org/packages/8a/44/eed9bb6462b9af74ea23ce8a76b396bfa945028cc7da7aa4c4a4547bb10a/cistem-0.9.0.tar.gz#sha256=ec8b23ebf0ddf29f260d37739c854194c68538d4b15b1cf6baa6904db4ce002d
2019-10-29T18:30:11   Removed cistem==0.9.0 from https://files.pythonhosted.org/packages/8a/44/eed9bb6462b9af74ea23ce8a76b396bfa945028cc7da7aa4c4a4547bb10a/cistem-0.9.0.tar.gz#sha256=ec8b23ebf0ddf29f260d37739c854194c68538d4b15b1cf6baa6904db4ce002d from build tracker '/tmp/pip-req-tracker-0xsvgxll'
2019-10-29T18:30:11 Building wheels for collected packages: cistem
2019-10-29T18:30:11   Created temporary directory: /tmp/pip-wheel-zeexfgow
2019-10-29T18:30:11   Building wheel for cistem (setup.py): started
2019-10-29T18:30:11   Destination directory: /tmp/pip-wheel-zeexfgow
2019-10-29T18:30:11   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-x_m_hnbv/cistem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zeexfgow
2019-10-29T18:30:12   /usr/lib/python3.7/distutils/extension.py:131: UserWarning: Unknown Extension options: 'build_dir'
2019-10-29T18:30:12     warnings.warn(msg)
2019-10-29T18:30:12   running bdist_wheel
2019-10-29T18:30:12   running build
2019-10-29T18:30:12   running build_py
2019-10-29T18:30:12   creating build
2019-10-29T18:30:12   creating build/lib.linux-armv7l-3.7
2019-10-29T18:30:12   creating build/lib.linux-armv7l-3.7/cistem
2019-10-29T18:30:12   copying cistem/about.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-29T18:30:12   copying cistem/sklearnModelsOpt.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-29T18:30:12   copying cistem/sklearnModels.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-29T18:30:12   copying cistem/__init__.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-29T18:30:12   running build_ext
2019-10-29T18:30:13   building 'cistem.biomarkers' extension
2019-10-29T18:30:13   creating build/temp.linux-armv7l-3.7
2019-10-29T18:30:13   creating build/temp.linux-armv7l-3.7/cistem
2019-10-29T18:30:13   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/biomarkers.cpp -o build/temp.linux-armv7l-3.7/cistem/biomarkers.o
2019-10-29T18:30:29   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/biomarkers.o -o build/lib.linux-armv7l-3.7/cistem/biomarkers.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:30:29   building 'cistem.common' extension
2019-10-29T18:30:29   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/common.cpp -o build/temp.linux-armv7l-3.7/cistem/common.o
2019-10-29T18:30:40   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/common.o -o build/lib.linux-armv7l-3.7/cistem/common.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:30:40   building 'cistem.features' extension
2019-10-29T18:30:40   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/features.cpp -o build/temp.linux-armv7l-3.7/cistem/features.o
2019-10-29T18:31:38   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/features.o -o build/lib.linux-armv7l-3.7/cistem/features.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:31:38   building 'cistem.models' extension
2019-10-29T18:31:38   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/models.cpp -o build/temp.linux-armv7l-3.7/cistem/models.o
2019-10-29T18:32:50   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/models.o -o build/lib.linux-armv7l-3.7/cistem/models.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:32:51   building 'cistem.motifs' extension
2019-10-29T18:32:51   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/motifs.cpp -o build/temp.linux-armv7l-3.7/cistem/motifs.o
2019-10-29T18:33:33   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/motifs.o -o build/lib.linux-armv7l-3.7/cistem/motifs.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:33:33   building 'cistem.regions' extension
2019-10-29T18:33:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/regions.cpp -o build/temp.linux-armv7l-3.7/cistem/regions.o
2019-10-29T18:34:33   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/regions.o -o build/lib.linux-armv7l-3.7/cistem/regions.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:34:33   building 'cistem.sequences' extension
2019-10-29T18:34:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/sequences.cpp -o build/temp.linux-armv7l-3.7/cistem/sequences.o
2019-10-29T18:34:35   cistem/sequences.cpp: In function ‘PyObject* __pyx_gb_6cistem_9sequences_18sequenceStream2bit_4generator5(__pyx_CoroutineObject*, PyThreadState*, PyObject*)’:
2019-10-29T18:34:35   cistem/sequences.cpp:18779:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2019-10-29T18:34:35              for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_15; __pyx_t_10+=1) {
2019-10-29T18:34:35                                   ~~~~~~~~~~~^~~~~~~~~~~~
2019-10-29T18:35:57   cistem/sequences.cpp: In function ‘PyObject* __pyx_pw_6cistem_9sequences_20generatorMarkovChain_13generate(PyObject*, PyObject*)’:
2019-10-29T18:35:57   cistem/sequences.cpp:28486:78: warning: ‘__pyx_v_nnt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2019-10-29T18:35:57        __pyx_cur_scope->__pyx_v_state = (((__pyx_cur_scope->__pyx_v_state << 2) | __pyx_v_nnt) & __pyx_v_andMask);
2019-10-29T18:35:57                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2019-10-29T18:35:57   cistem/sequences.cpp:27973:7: note: ‘__pyx_v_nnt’ was declared here
2019-10-29T18:35:57      int __pyx_v_nnt;
2019-10-29T18:35:57          ^~~~~~~~~~~
2019-10-29T18:36:16   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/sequences.o -o build/lib.linux-armv7l-3.7/cistem/sequences.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:36:16   building 'cistem.validation' extension
2019-10-29T18:36:16   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/validation.cpp -o build/temp.linux-armv7l-3.7/cistem/validation.o
2019-10-29T18:36:38   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/validation.o -o build/lib.linux-armv7l-3.7/cistem/validation.cpython-37m-arm-linux-gnueabihf.so
2019-10-29T18:36:38   installing to build/bdist.linux-armv7l/wheel
2019-10-29T18:36:38   running install
2019-10-29T18:36:38   running install_lib
2019-10-29T18:36:38   creating build/bdist.linux-armv7l
2019-10-29T18:36:38   creating build/bdist.linux-armv7l/wheel
2019-10-29T18:36:38   creating build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/about.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/motifs.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/sklearnModelsOpt.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/features.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/common.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/validation.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/models.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/sklearnModels.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/regions.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:38   copying build/lib.linux-armv7l-3.7/cistem/sequences.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:39   copying build/lib.linux-armv7l-3.7/cistem/__init__.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:39   copying build/lib.linux-armv7l-3.7/cistem/biomarkers.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-29T18:36:39   running install_egg_info
2019-10-29T18:36:39   running egg_info
2019-10-29T18:36:39   writing cistem.egg-info/PKG-INFO
2019-10-29T18:36:39   writing dependency_links to cistem.egg-info/dependency_links.txt
2019-10-29T18:36:39   writing top-level names to cistem.egg-info/top_level.txt
2019-10-29T18:36:39   reading manifest file 'cistem.egg-info/SOURCES.txt'
2019-10-29T18:36:39   writing manifest file 'cistem.egg-info/SOURCES.txt'
2019-10-29T18:36:39   Copying cistem.egg-info to build/bdist.linux-armv7l/wheel/cistem-0.9.0-py3.7.egg-info
2019-10-29T18:36:39   running install_scripts
2019-10-29T18:36:39   creating build/bdist.linux-armv7l/wheel/cistem-0.9.0.dist-info/WHEEL
2019-10-29T18:36:39   creating '/tmp/pip-wheel-zeexfgow/cistem-0.9.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-10-29T18:36:39   adding 'cistem/__init__.py'
2019-10-29T18:36:39   adding 'cistem/about.py'
2019-10-29T18:36:39   adding 'cistem/biomarkers.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:39   adding 'cistem/common.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:40   adding 'cistem/features.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:40   adding 'cistem/models.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:40   adding 'cistem/motifs.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:41   adding 'cistem/regions.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:42   adding 'cistem/sequences.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:42   adding 'cistem/sklearnModels.py'
2019-10-29T18:36:42   adding 'cistem/sklearnModelsOpt.py'
2019-10-29T18:36:42   adding 'cistem/validation.cpython-37m-arm-linux-gnueabihf.so'
2019-10-29T18:36:42   adding 'cistem-0.9.0.dist-info/METADATA'
2019-10-29T18:36:42   adding 'cistem-0.9.0.dist-info/WHEEL'
2019-10-29T18:36:42   adding 'cistem-0.9.0.dist-info/top_level.txt'
2019-10-29T18:36:42   adding 'cistem-0.9.0.dist-info/RECORD'
2019-10-29T18:36:42   removing build/bdist.linux-armv7l/wheel
2019-10-29T18:36:42   Building wheel for cistem (setup.py): finished with status 'done'
2019-10-29T18:36:42   Stored in directory: /tmp/tmpj2hewd3u
2019-10-29T18:36:42 Successfully built cistem
2019-10-29T18:36:42 Cleaning up...
2019-10-29T18:36:42   Removing source in /tmp/pip-wheel-x_m_hnbv/cistem
2019-10-29T18:36:42 Removed build tracker '/tmp/pip-req-tracker-0xsvgxll'