2019-10-31T12:13:51 Created temporary directory: /tmp/pip-ephem-wheel-cache-ysez7pc6
2019-10-31T12:13:51 Created temporary directory: /tmp/pip-req-tracker-3bqpm29z
2019-10-31T12:13:51 Created requirements tracker '/tmp/pip-req-tracker-3bqpm29z'
2019-10-31T12:13:51 Created temporary directory: /tmp/pip-wheel-jk4sz3yy
2019-10-31T12:13:51 Collecting cistem==0.9.1
2019-10-31T12:13:51   1 location(s) to search for versions of cistem:
2019-10-31T12:13:51   * https://pypi.org/simple/cistem/
2019-10-31T12:13:51   Getting page https://pypi.org/simple/cistem/
2019-10-31T12:13:52   Analyzing links from page https://pypi.org/simple/cistem/
2019-10-31T12:13:52     Found link https://files.pythonhosted.org/packages/fa/6d/6e1a2368f0801906290d51a763560d1f3ccec33cc9ccc1c5fa7240d21125/cistem-0.9.1.tar.gz#sha256=8b3f461ec7d18bbb2791983c1e1d4ab779856c82f473228038d1ef3f9eaeff8f (from https://pypi.org/simple/cistem/), version: 0.9.1
2019-10-31T12:13:52   Using version 0.9.1 (newest of versions: 0.9.1)
2019-10-31T12:13:52   Created temporary directory: /tmp/pip-unpack-dcn9v3l7
2019-10-31T12:13:52   Downloading https://files.pythonhosted.org/packages/fa/6d/6e1a2368f0801906290d51a763560d1f3ccec33cc9ccc1c5fa7240d21125/cistem-0.9.1.tar.gz (945kB)
2019-10-31T12:13:52   Downloading from URL https://files.pythonhosted.org/packages/fa/6d/6e1a2368f0801906290d51a763560d1f3ccec33cc9ccc1c5fa7240d21125/cistem-0.9.1.tar.gz#sha256=8b3f461ec7d18bbb2791983c1e1d4ab779856c82f473228038d1ef3f9eaeff8f (from https://pypi.org/simple/cistem/)
2019-10-31T12:13:53   Added cistem==0.9.1 from https://files.pythonhosted.org/packages/fa/6d/6e1a2368f0801906290d51a763560d1f3ccec33cc9ccc1c5fa7240d21125/cistem-0.9.1.tar.gz#sha256=8b3f461ec7d18bbb2791983c1e1d4ab779856c82f473228038d1ef3f9eaeff8f to build tracker '/tmp/pip-req-tracker-3bqpm29z'
2019-10-31T12:13:53     Running setup.py (path:/tmp/pip-wheel-jk4sz3yy/cistem/setup.py) egg_info for package cistem
2019-10-31T12:13:53     Running command python setup.py egg_info
2019-10-31T12:13:54     running egg_info
2019-10-31T12:13:54     creating pip-egg-info/cistem.egg-info
2019-10-31T12:13:54     writing pip-egg-info/cistem.egg-info/PKG-INFO
2019-10-31T12:13:54     writing dependency_links to pip-egg-info/cistem.egg-info/dependency_links.txt
2019-10-31T12:13:54     writing top-level names to pip-egg-info/cistem.egg-info/top_level.txt
2019-10-31T12:13:54     writing manifest file 'pip-egg-info/cistem.egg-info/SOURCES.txt'
2019-10-31T12:13:55     reading manifest file 'pip-egg-info/cistem.egg-info/SOURCES.txt'
2019-10-31T12:13:55     writing manifest file 'pip-egg-info/cistem.egg-info/SOURCES.txt'
2019-10-31T12:13:55     /usr/lib/python3.7/distutils/extension.py:131: UserWarning: Unknown Extension options: 'build_dir'
2019-10-31T12:13:55       warnings.warn(msg)
2019-10-31T12:13:55   Source in /tmp/pip-wheel-jk4sz3yy/cistem has version 0.9.1, which satisfies requirement cistem==0.9.1 from https://files.pythonhosted.org/packages/fa/6d/6e1a2368f0801906290d51a763560d1f3ccec33cc9ccc1c5fa7240d21125/cistem-0.9.1.tar.gz#sha256=8b3f461ec7d18bbb2791983c1e1d4ab779856c82f473228038d1ef3f9eaeff8f
2019-10-31T12:13:55   Removed cistem==0.9.1 from https://files.pythonhosted.org/packages/fa/6d/6e1a2368f0801906290d51a763560d1f3ccec33cc9ccc1c5fa7240d21125/cistem-0.9.1.tar.gz#sha256=8b3f461ec7d18bbb2791983c1e1d4ab779856c82f473228038d1ef3f9eaeff8f from build tracker '/tmp/pip-req-tracker-3bqpm29z'
2019-10-31T12:13:55 Building wheels for collected packages: cistem
2019-10-31T12:13:55   Created temporary directory: /tmp/pip-wheel-lsj6wjug
2019-10-31T12:13:55   Building wheel for cistem (setup.py): started
2019-10-31T12:13:55   Destination directory: /tmp/pip-wheel-lsj6wjug
2019-10-31T12:13:55   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-jk4sz3yy/cistem/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lsj6wjug
2019-10-31T12:13:56   /usr/lib/python3.7/distutils/extension.py:131: UserWarning: Unknown Extension options: 'build_dir'
2019-10-31T12:13:56     warnings.warn(msg)
2019-10-31T12:13:56   running bdist_wheel
2019-10-31T12:13:56   running build
2019-10-31T12:13:56   running build_py
2019-10-31T12:13:56   creating build
2019-10-31T12:13:56   creating build/lib.linux-armv7l-3.7
2019-10-31T12:13:56   creating build/lib.linux-armv7l-3.7/cistem
2019-10-31T12:13:56   copying cistem/about.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-31T12:13:56   copying cistem/sklearnModelsOpt.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-31T12:13:56   copying cistem/__init__.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-31T12:13:56   copying cistem/sklearnModels.py -> build/lib.linux-armv7l-3.7/cistem
2019-10-31T12:13:56   running build_ext
2019-10-31T12:13:57   building 'cistem.biomarkers' extension
2019-10-31T12:13:57   creating build/temp.linux-armv7l-3.7
2019-10-31T12:13:57   creating build/temp.linux-armv7l-3.7/cistem
2019-10-31T12:13:57   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/biomarkers.cpp -o build/temp.linux-armv7l-3.7/cistem/biomarkers.o
2019-10-31T12:14:13   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/biomarkers.o -o build/lib.linux-armv7l-3.7/cistem/biomarkers.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:14:13   building 'cistem.common' extension
2019-10-31T12:14:13   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/common.cpp -o build/temp.linux-armv7l-3.7/cistem/common.o
2019-10-31T12:14:24   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/common.o -o build/lib.linux-armv7l-3.7/cistem/common.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:14:24   building 'cistem.features' extension
2019-10-31T12:14:24   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/features.cpp -o build/temp.linux-armv7l-3.7/cistem/features.o
2019-10-31T12:15:22   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/features.o -o build/lib.linux-armv7l-3.7/cistem/features.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:15:22   building 'cistem.models' extension
2019-10-31T12:15:22   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/models.cpp -o build/temp.linux-armv7l-3.7/cistem/models.o
2019-10-31T12:16:35   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/models.o -o build/lib.linux-armv7l-3.7/cistem/models.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:16:35   building 'cistem.motifs' extension
2019-10-31T12:16:35   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/motifs.cpp -o build/temp.linux-armv7l-3.7/cistem/motifs.o
2019-10-31T12:17:18   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/motifs.o -o build/lib.linux-armv7l-3.7/cistem/motifs.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:17:18   building 'cistem.regions' extension
2019-10-31T12:17:18   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/regions.cpp -o build/temp.linux-armv7l-3.7/cistem/regions.o
2019-10-31T12:18:17   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/regions.o -o build/lib.linux-armv7l-3.7/cistem/regions.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:18:18   building 'cistem.sequences' extension
2019-10-31T12:18:18   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/sequences.cpp -o build/temp.linux-armv7l-3.7/cistem/sequences.o
2019-10-31T12:18:20   cistem/sequences.cpp: In function ‘PyObject* __pyx_gb_6cistem_9sequences_18sequenceStream2bit_4generator5(__pyx_CoroutineObject*, PyThreadState*, PyObject*)’:
2019-10-31T12:18:20   cistem/sequences.cpp:18800:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2019-10-31T12:18:20              for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_15; __pyx_t_10+=1) {
2019-10-31T12:18:20                                   ~~~~~~~~~~~^~~~~~~~~~~~
2019-10-31T12:19:42   cistem/sequences.cpp: In function ‘PyObject* __pyx_pw_6cistem_9sequences_20generatorMarkovChain_13generate(PyObject*, PyObject*)’:
2019-10-31T12:19:42   cistem/sequences.cpp:28518:78: warning: ‘__pyx_v_nnt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2019-10-31T12:19:42        __pyx_cur_scope->__pyx_v_state = (((__pyx_cur_scope->__pyx_v_state << 2) | __pyx_v_nnt) & __pyx_v_andMask);
2019-10-31T12:19:42                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2019-10-31T12:19:42   cistem/sequences.cpp:28005:7: note: ‘__pyx_v_nnt’ was declared here
2019-10-31T12:19:42      int __pyx_v_nnt;
2019-10-31T12:19:42          ^~~~~~~~~~~
2019-10-31T12:20:00   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/sequences.o -o build/lib.linux-armv7l-3.7/cistem/sequences.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:20:01   building 'cistem.validation' extension
2019-10-31T12:20:01   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c cistem/validation.cpp -o build/temp.linux-armv7l-3.7/cistem/validation.o
2019-10-31T12:20:20   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/cistem/validation.o -o build/lib.linux-armv7l-3.7/cistem/validation.cpython-37m-arm-linux-gnueabihf.so
2019-10-31T12:20:20   installing to build/bdist.linux-armv7l/wheel
2019-10-31T12:20:20   running install
2019-10-31T12:20:20   running install_lib
2019-10-31T12:20:20   creating build/bdist.linux-armv7l
2019-10-31T12:20:20   creating build/bdist.linux-armv7l/wheel
2019-10-31T12:20:20   creating build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/common.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/regions.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/about.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/sklearnModelsOpt.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/biomarkers.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/__init__.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/models.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:20   copying build/lib.linux-armv7l-3.7/cistem/sequences.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:21   copying build/lib.linux-armv7l-3.7/cistem/sklearnModels.py -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:21   copying build/lib.linux-armv7l-3.7/cistem/features.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:21   copying build/lib.linux-armv7l-3.7/cistem/validation.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:21   copying build/lib.linux-armv7l-3.7/cistem/motifs.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cistem
2019-10-31T12:20:21   running install_egg_info
2019-10-31T12:20:21   running egg_info
2019-10-31T12:20:21   writing cistem.egg-info/PKG-INFO
2019-10-31T12:20:21   writing dependency_links to cistem.egg-info/dependency_links.txt
2019-10-31T12:20:21   writing top-level names to cistem.egg-info/top_level.txt
2019-10-31T12:20:21   reading manifest file 'cistem.egg-info/SOURCES.txt'
2019-10-31T12:20:21   writing manifest file 'cistem.egg-info/SOURCES.txt'
2019-10-31T12:20:21   Copying cistem.egg-info to build/bdist.linux-armv7l/wheel/cistem-0.9.1-py3.7.egg-info
2019-10-31T12:20:21   running install_scripts
2019-10-31T12:20:21   creating build/bdist.linux-armv7l/wheel/cistem-0.9.1.dist-info/WHEEL
2019-10-31T12:20:21   creating '/tmp/pip-wheel-lsj6wjug/cistem-0.9.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-10-31T12:20:21   adding 'cistem/__init__.py'
2019-10-31T12:20:21   adding 'cistem/about.py'
2019-10-31T12:20:21   adding 'cistem/biomarkers.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:21   adding 'cistem/common.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:22   adding 'cistem/features.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:22   adding 'cistem/models.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:23   adding 'cistem/motifs.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:23   adding 'cistem/regions.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:24   adding 'cistem/sequences.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:24   adding 'cistem/sklearnModels.py'
2019-10-31T12:20:24   adding 'cistem/sklearnModelsOpt.py'
2019-10-31T12:20:24   adding 'cistem/validation.cpython-37m-arm-linux-gnueabihf.so'
2019-10-31T12:20:24   adding 'cistem-0.9.1.dist-info/METADATA'
2019-10-31T12:20:24   adding 'cistem-0.9.1.dist-info/WHEEL'
2019-10-31T12:20:24   adding 'cistem-0.9.1.dist-info/top_level.txt'
2019-10-31T12:20:24   adding 'cistem-0.9.1.dist-info/RECORD'
2019-10-31T12:20:24   removing build/bdist.linux-armv7l/wheel
2019-10-31T12:20:24   Building wheel for cistem (setup.py): finished with status 'done'
2019-10-31T12:20:24   Stored in directory: /tmp/tmpw2j17rha
2019-10-31T12:20:24 Successfully built cistem
2019-10-31T12:20:24 Cleaning up...
2019-10-31T12:20:24   Removing source in /tmp/pip-wheel-jk4sz3yy/cistem
2019-10-31T12:20:24 Removed build tracker '/tmp/pip-req-tracker-3bqpm29z'