Created temporary directory: /tmp/pip-ephem-wheel-cache-v63m4awu Created temporary directory: /tmp/pip-req-tracker-ywbhrkov Created requirements tracker '/tmp/pip-req-tracker-ywbhrkov' Created temporary directory: /tmp/pip-wheel-cj3s9e22 Collecting BioSAK==1.18.6 1 location(s) to search for versions of BioSAK: * https://pypi.org/simple/biosak/ Getting page https://pypi.org/simple/biosak/ Analyzing links from page https://pypi.org/simple/biosak/ Skipping link https://files.pythonhosted.org/packages/28/97/e3a111da00ce805e2944c6404cb03c464d4e86e71df0d3aa7c43a7fd4433/BioSAK-1.18.6-py2-none-any.whl#sha256=a91ae2c9be3875559d6d8a237132e5979c42e0d1f82e673dab162018256bf317 (from https://pypi.org/simple/biosak/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 (from https://pypi.org/simple/biosak/), version: 1.18.6 Using version 1.18.6 (newest of versions: 1.18.6) Created temporary directory: /tmp/pip-unpack-2ws18q2o Downloading https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz (738kB) Downloading from URL https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 (from https://pypi.org/simple/biosak/) Added BioSAK==1.18.6 from https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 to build tracker '/tmp/pip-req-tracker-ywbhrkov' Running setup.py (path:/tmp/pip-wheel-cj3s9e22/BioSAK/setup.py) egg_info for package BioSAK Running command python setup.py egg_info running egg_info creating pip-egg-info/BioSAK.egg-info writing pip-egg-info/BioSAK.egg-info/PKG-INFO writing requirements to pip-egg-info/BioSAK.egg-info/requires.txt writing top-level names to pip-egg-info/BioSAK.egg-info/top_level.txt writing dependency_links to pip-egg-info/BioSAK.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'BioSAK/select_contig.pl' warning: no files found matching 'BioSAK/get_fasta_stats.pl' writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-cj3s9e22/BioSAK has version 1.18.6, which satisfies requirement BioSAK==1.18.6 from https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 Removed BioSAK==1.18.6 from https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 from build tracker '/tmp/pip-req-tracker-ywbhrkov' Building wheels for collected packages: BioSAK Created temporary directory: /tmp/pip-wheel-e3j300uz Running setup.py bdist_wheel for BioSAK: started Destination directory: /tmp/pip-wheel-e3j300uz Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-cj3s9e22/BioSAK/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-e3j300uz running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/BioSAK copying BioSAK/Gene2Ctg.py -> build/lib/BioSAK copying BioSAK/BacDive.py -> build/lib/BioSAK copying BioSAK/fq2fa.py -> build/lib/BioSAK copying BioSAK/Newick_tree_plotter.py -> build/lib/BioSAK copying BioSAK/SankeyTaxon.py -> build/lib/BioSAK copying BioSAK/get_gene_depth.py -> build/lib/BioSAK copying BioSAK/CheckM_Runner.py -> build/lib/BioSAK copying BioSAK/Subset_tree.py -> build/lib/BioSAK copying BioSAK/select_seq.py -> build/lib/BioSAK copying BioSAK/KEGG_get_eukaryotic_kos.py -> build/lib/BioSAK copying BioSAK/get_aa_composition.py -> build/lib/BioSAK copying BioSAK/Annotation_barrnap.py -> build/lib/BioSAK copying BioSAK/sep_reads_by_barcode.py -> build/lib/BioSAK copying BioSAK/get_bin_abundance.py -> build/lib/BioSAK copying BioSAK/tmp_2.py -> build/lib/BioSAK copying BioSAK/Annotation_Prodigal.py -> build/lib/BioSAK copying BioSAK/COG2014.py -> build/lib/BioSAK copying BioSAK/Annotation_Prokka.py -> build/lib/BioSAK copying BioSAK/boxplot_matrix_COG.py -> build/lib/BioSAK copying BioSAK/__init__.py -> build/lib/BioSAK copying BioSAK/dbCAN.py -> build/lib/BioSAK copying BioSAK/COG2003.py -> build/lib/BioSAK copying BioSAK/KEGG.py -> build/lib/BioSAK copying BioSAK/keep_best_hit.py -> build/lib/BioSAK copying BioSAK/Reads_simulator.py -> build/lib/BioSAK copying BioSAK/iTOL_wrapper.py -> build/lib/BioSAK copying BioSAK/get_SCG_tree.py -> build/lib/BioSAK copying BioSAK/global_functions.py -> build/lib/BioSAK copying BioSAK/sra_reads_downloader.py -> build/lib/BioSAK copying BioSAK/boxplot_matrix_COG_backup.py -> build/lib/BioSAK copying BioSAK/download_GenBank_genome.py -> build/lib/BioSAK copying BioSAK/manipulator_msa.py -> build/lib/BioSAK copying BioSAK/BioSAK_config.py -> build/lib/BioSAK copying BioSAK/get_total_length.py -> build/lib/BioSAK copying BioSAK/manipulator_fasta.py -> build/lib/BioSAK copying BioSAK/label_tree.py -> build/lib/BioSAK copying BioSAK/manipulator_sam.py -> build/lib/BioSAK copying BioSAK/get_reads_from_sam.py -> build/lib/BioSAK copying BioSAK/get_gc.py -> build/lib/BioSAK copying BioSAK/split_folder.py -> build/lib/BioSAK copying BioSAK/FastaSplitler_by_num.py -> build/lib/BioSAK copying BioSAK/boxplot_matrix_KEGG.py -> build/lib/BioSAK copying BioSAK/gbk_to_ffn_faa.py -> build/lib/BioSAK copying BioSAK/get_Pfam_hmms.py -> build/lib/BioSAK copying BioSAK/tmp_3.py -> build/lib/BioSAK copying BioSAK/get_bin_abundance_backup.py -> build/lib/BioSAK copying BioSAK/plot_sam_depth.py -> build/lib/BioSAK copying BioSAK/FastaSplitler_by_size.py -> build/lib/BioSAK copying BioSAK/format_converter.py -> build/lib/BioSAK copying BioSAK/tmp_1.py -> build/lib/BioSAK copying BioSAK/manipulator_newick.py -> build/lib/BioSAK running egg_info writing requirements to BioSAK.egg-info/requires.txt writing top-level names to BioSAK.egg-info/top_level.txt writing BioSAK.egg-info/PKG-INFO writing dependency_links to BioSAK.egg-info/dependency_links.txt reading manifest file 'BioSAK.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'BioSAK/select_contig.pl' warning: no files found matching 'BioSAK/get_fasta_stats.pl' writing manifest file 'BioSAK.egg-info/SOURCES.txt' copying BioSAK/MetaCHIP_phylo.hmm -> build/lib/BioSAK copying BioSAK/VERSION -> build/lib/BioSAK copying BioSAK/cdd2cog.pl -> build/lib/BioSAK copying BioSAK/get_sankey_plot.R -> build/lib/BioSAK running build_scripts creating build/scripts-3.4 copying and adjusting bin/BioSAK -> build/scripts-3.4 changing mode of build/scripts-3.4/BioSAK from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Gene2Ctg.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/BacDive.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/fq2fa.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Newick_tree_plotter.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/SankeyTaxon.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_gene_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/CheckM_Runner.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Subset_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/select_seq.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/KEGG_get_eukaryotic_kos.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_aa_composition.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Annotation_barrnap.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/sep_reads_by_barcode.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_bin_abundance.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/tmp_2.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Annotation_Prodigal.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/COG2014.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Annotation_Prokka.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/boxplot_matrix_COG.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/__init__.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/dbCAN.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/COG2003.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/keep_best_hit.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/VERSION -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Reads_simulator.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/iTOL_wrapper.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_SCG_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/global_functions.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/sra_reads_downloader.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/boxplot_matrix_COG_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_sankey_plot.R -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/download_GenBank_genome.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/MetaCHIP_phylo.hmm -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_msa.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/BioSAK_config.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_total_length.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_fasta.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/label_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_reads_from_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_gc.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/split_folder.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/FastaSplitler_by_num.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/boxplot_matrix_KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/gbk_to_ffn_faa.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/cdd2cog.pl -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_Pfam_hmms.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/tmp_3.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_bin_abundance_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/plot_sam_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/FastaSplitler_by_size.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/format_converter.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/tmp_1.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_newick.py -> build/bdist.linux-armv7l/wheel/BioSAK running install_egg_info Copying BioSAK.egg-info to build/bdist.linux-armv7l/wheel/BioSAK-1.18.6-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.6.data creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.6.data/scripts copying build/scripts-3.4/BioSAK -> build/bdist.linux-armv7l/wheel/BioSAK-1.18.6.data/scripts changing mode of build/bdist.linux-armv7l/wheel/BioSAK-1.18.6.data/scripts/BioSAK to 755 creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.6.dist-info/WHEEL creating '/tmp/pip-wheel-e3j300uz/BioSAK-1.18.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'BioSAK/Annotation_Prodigal.py' adding 'BioSAK/Annotation_Prokka.py' adding 'BioSAK/Annotation_barrnap.py' adding 'BioSAK/BacDive.py' adding 'BioSAK/BioSAK_config.py' adding 'BioSAK/COG2003.py' adding 'BioSAK/COG2014.py' adding 'BioSAK/CheckM_Runner.py' adding 'BioSAK/FastaSplitler_by_num.py' adding 'BioSAK/FastaSplitler_by_size.py' adding 'BioSAK/Gene2Ctg.py' adding 'BioSAK/KEGG.py' adding 'BioSAK/KEGG_get_eukaryotic_kos.py' adding 'BioSAK/MetaCHIP_phylo.hmm' adding 'BioSAK/Newick_tree_plotter.py' adding 'BioSAK/Reads_simulator.py' adding 'BioSAK/SankeyTaxon.py' adding 'BioSAK/Subset_tree.py' adding 'BioSAK/VERSION' adding 'BioSAK/__init__.py' adding 'BioSAK/boxplot_matrix_COG.py' adding 'BioSAK/boxplot_matrix_COG_backup.py' adding 'BioSAK/boxplot_matrix_KEGG.py' adding 'BioSAK/cdd2cog.pl' adding 'BioSAK/dbCAN.py' adding 'BioSAK/download_GenBank_genome.py' adding 'BioSAK/format_converter.py' adding 'BioSAK/fq2fa.py' adding 'BioSAK/gbk_to_ffn_faa.py' adding 'BioSAK/get_Pfam_hmms.py' adding 'BioSAK/get_SCG_tree.py' adding 'BioSAK/get_aa_composition.py' adding 'BioSAK/get_bin_abundance.py' adding 'BioSAK/get_bin_abundance_backup.py' adding 'BioSAK/get_gc.py' adding 'BioSAK/get_gene_depth.py' adding 'BioSAK/get_reads_from_sam.py' adding 'BioSAK/get_sankey_plot.R' adding 'BioSAK/get_total_length.py' adding 'BioSAK/global_functions.py' adding 'BioSAK/iTOL_wrapper.py' adding 'BioSAK/keep_best_hit.py' adding 'BioSAK/label_tree.py' adding 'BioSAK/manipulator_fasta.py' adding 'BioSAK/manipulator_msa.py' adding 'BioSAK/manipulator_newick.py' adding 'BioSAK/manipulator_sam.py' adding 'BioSAK/plot_sam_depth.py' adding 'BioSAK/select_seq.py' adding 'BioSAK/sep_reads_by_barcode.py' adding 'BioSAK/split_folder.py' adding 'BioSAK/sra_reads_downloader.py' adding 'BioSAK/tmp_1.py' adding 'BioSAK/tmp_2.py' adding 'BioSAK/tmp_3.py' adding 'BioSAK-1.18.6.data/scripts/BioSAK' adding 'BioSAK-1.18.6.dist-info/METADATA' adding 'BioSAK-1.18.6.dist-info/WHEEL' adding 'BioSAK-1.18.6.dist-info/top_level.txt' adding 'BioSAK-1.18.6.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for BioSAK: finished with status 'done' Stored in directory: /tmp/tmpicf7e60a Successfully built BioSAK Cleaning up... Removing source in /tmp/pip-wheel-cj3s9e22/BioSAK Removed build tracker '/tmp/pip-req-tracker-ywbhrkov'