2019-11-05T05:27:19 Created temporary directory: /tmp/pip-ephem-wheel-cache-ik91631y
2019-11-05T05:27:19 Created temporary directory: /tmp/pip-req-tracker-kdtab2he
2019-11-05T05:27:19 Created requirements tracker '/tmp/pip-req-tracker-kdtab2he'
2019-11-05T05:27:19 Created temporary directory: /tmp/pip-wheel-_46f8ydi
2019-11-05T05:27:19 Collecting BioSAK==1.18.7
2019-11-05T05:27:19   1 location(s) to search for versions of BioSAK:
2019-11-05T05:27:19   * https://pypi.org/simple/biosak/
2019-11-05T05:27:19   Getting page https://pypi.org/simple/biosak/
2019-11-05T05:27:19   Analyzing links from page https://pypi.org/simple/biosak/
2019-11-05T05:27:19     Skipping link https://files.pythonhosted.org/packages/28/97/e3a111da00ce805e2944c6404cb03c464d4e86e71df0d3aa7c43a7fd4433/BioSAK-1.18.6-py2-none-any.whl#sha256=a91ae2c9be3875559d6d8a237132e5979c42e0d1f82e673dab162018256bf317 (from https://pypi.org/simple/biosak/); it is not compatible with this Python
2019-11-05T05:27:19     Found link https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 (from https://pypi.org/simple/biosak/), version: 1.18.6
2019-11-05T05:27:19     Skipping link https://files.pythonhosted.org/packages/fa/58/808c6d99f57841312c9c2c29fdebab5f4f00b2b937e22d6676840b8cf5d1/BioSAK-1.18.7-py2-none-any.whl#sha256=426c86737f2cdfee9f3c4c44f4fd930fa562602f52dc4a055ea969b89f4dfa83 (from https://pypi.org/simple/biosak/); it is not compatible with this Python
2019-11-05T05:27:19     Found link https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545 (from https://pypi.org/simple/biosak/), version: 1.18.7
2019-11-05T05:27:19   Using version 1.18.7 (newest of versions: 1.18.7)
2019-11-05T05:27:19   Created temporary directory: /tmp/pip-unpack-a8rg9tsb
2019-11-05T05:27:20   Downloading https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz (738kB)
2019-11-05T05:27:20   Downloading from URL https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545 (from https://pypi.org/simple/biosak/)
2019-11-05T05:27:22   Added BioSAK==1.18.7 from https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545 to build tracker '/tmp/pip-req-tracker-kdtab2he'
2019-11-05T05:27:22     Running setup.py (path:/tmp/pip-wheel-_46f8ydi/BioSAK/setup.py) egg_info for package BioSAK
2019-11-05T05:27:22     Running command python setup.py egg_info
2019-11-05T05:27:23     running egg_info
2019-11-05T05:27:23     creating pip-egg-info/BioSAK.egg-info
2019-11-05T05:27:23     writing requirements to pip-egg-info/BioSAK.egg-info/requires.txt
2019-11-05T05:27:23     writing pip-egg-info/BioSAK.egg-info/PKG-INFO
2019-11-05T05:27:23     writing top-level names to pip-egg-info/BioSAK.egg-info/top_level.txt
2019-11-05T05:27:23     writing dependency_links to pip-egg-info/BioSAK.egg-info/dependency_links.txt
2019-11-05T05:27:23     writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt'
2019-11-05T05:27:24     reading manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt'
2019-11-05T05:27:24     reading manifest template 'MANIFEST.in'
2019-11-05T05:27:24     warning: no files found matching 'BioSAK/select_contig.pl'
2019-11-05T05:27:24     warning: no files found matching 'BioSAK/get_fasta_stats.pl'
2019-11-05T05:27:24     writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt'
2019-11-05T05:27:24   Source in /tmp/pip-wheel-_46f8ydi/BioSAK has version 1.18.7, which satisfies requirement BioSAK==1.18.7 from https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545
2019-11-05T05:27:24   Removed BioSAK==1.18.7 from https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545 from build tracker '/tmp/pip-req-tracker-kdtab2he'
2019-11-05T05:27:24 Building wheels for collected packages: BioSAK
2019-11-05T05:27:24   Created temporary directory: /tmp/pip-wheel-op2i9k4x
2019-11-05T05:27:24   Building wheel for BioSAK (setup.py): started
2019-11-05T05:27:24   Destination directory: /tmp/pip-wheel-op2i9k4x
2019-11-05T05:27:24   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-_46f8ydi/BioSAK/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-op2i9k4x
2019-11-05T05:27:26   running bdist_wheel
2019-11-05T05:27:26   running build
2019-11-05T05:27:26   running build_py
2019-11-05T05:27:26   creating build
2019-11-05T05:27:26   creating build/lib
2019-11-05T05:27:26   creating build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/KEGG_get_eukaryotic_kos.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/SankeyTaxon.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/tmp_1.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/select_seq.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/manipulator_sam.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/plot_sam_depth.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_aa_composition.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_reads_from_sam.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/keep_best_hit.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/Annotation_barrnap.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_SCG_tree.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_total_length.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/sra_reads_downloader.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/tmp_3.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/BioSAK_config.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/KEGG.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_bin_abundance.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/Subset_tree.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/COG2014.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_Pfam_hmms.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/BacDive.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_gc.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_gene_depth.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/fq2fa.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/boxplot_matrix_KEGG.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/boxplot_matrix_COG_backup.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/FastaSplitler_by_size.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/tmp_2.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/Annotation_Prokka.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/dbCAN.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/iTOL_wrapper.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/split_folder.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/COG2003.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/boxplot_matrix_COG.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/Gene2Ctg.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/Annotation_Prodigal.py -> build/lib/BioSAK
2019-11-05T05:27:26   copying BioSAK/get_bin_abundance_backup.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/format_converter.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/Reads_simulator.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/Newick_tree_plotter.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/global_functions.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/manipulator_fasta.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/download_GenBank_genome.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/gbk_to_ffn_faa.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/manipulator_msa.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/CheckM_Runner.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/__init__.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/FastaSplitler_by_num.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/sep_reads_by_barcode.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/label_tree.py -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/manipulator_newick.py -> build/lib/BioSAK
2019-11-05T05:27:27   running egg_info
2019-11-05T05:27:27   writing requirements to BioSAK.egg-info/requires.txt
2019-11-05T05:27:27   writing top-level names to BioSAK.egg-info/top_level.txt
2019-11-05T05:27:27   writing dependency_links to BioSAK.egg-info/dependency_links.txt
2019-11-05T05:27:27   writing BioSAK.egg-info/PKG-INFO
2019-11-05T05:27:27   reading manifest file 'BioSAK.egg-info/SOURCES.txt'
2019-11-05T05:27:27   reading manifest template 'MANIFEST.in'
2019-11-05T05:27:27   warning: no files found matching 'BioSAK/select_contig.pl'
2019-11-05T05:27:27   warning: no files found matching 'BioSAK/get_fasta_stats.pl'
2019-11-05T05:27:27   writing manifest file 'BioSAK.egg-info/SOURCES.txt'
2019-11-05T05:27:27   copying BioSAK/MetaCHIP_phylo.hmm -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/VERSION -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/cdd2cog.pl -> build/lib/BioSAK
2019-11-05T05:27:27   copying BioSAK/get_sankey_plot.R -> build/lib/BioSAK
2019-11-05T05:27:27   running build_scripts
2019-11-05T05:27:27   creating build/scripts-3.5
2019-11-05T05:27:27   copying and adjusting bin/BioSAK -> build/scripts-3.5
2019-11-05T05:27:27   changing mode of build/scripts-3.5/BioSAK from 644 to 755
2019-11-05T05:27:27   installing to build/bdist.linux-armv7l/wheel
2019-11-05T05:27:27   running install
2019-11-05T05:27:27   running install_lib
2019-11-05T05:27:27   creating build/bdist.linux-armv7l
2019-11-05T05:27:27   creating build/bdist.linux-armv7l/wheel
2019-11-05T05:27:27   creating build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/KEGG_get_eukaryotic_kos.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/SankeyTaxon.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/tmp_1.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/select_seq.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/manipulator_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/plot_sam_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_aa_composition.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_reads_from_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/keep_best_hit.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/Annotation_barrnap.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_SCG_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_total_length.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/sra_reads_downloader.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/tmp_3.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/BioSAK_config.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_sankey_plot.R -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_bin_abundance.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/Subset_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/COG2014.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_Pfam_hmms.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/BacDive.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_gc.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/get_gene_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/fq2fa.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/boxplot_matrix_KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/boxplot_matrix_COG_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/FastaSplitler_by_size.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/tmp_2.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/Annotation_Prokka.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:27   copying build/lib/BioSAK/MetaCHIP_phylo.hmm -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/dbCAN.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/iTOL_wrapper.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/split_folder.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/COG2003.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/boxplot_matrix_COG.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/Gene2Ctg.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/Annotation_Prodigal.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/cdd2cog.pl -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/get_bin_abundance_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/VERSION -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/format_converter.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/Reads_simulator.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/Newick_tree_plotter.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/global_functions.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/manipulator_fasta.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/download_GenBank_genome.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/gbk_to_ffn_faa.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/manipulator_msa.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/CheckM_Runner.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/__init__.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/FastaSplitler_by_num.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/sep_reads_by_barcode.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/label_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   copying build/lib/BioSAK/manipulator_newick.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T05:27:28   running install_egg_info
2019-11-05T05:27:28   Copying BioSAK.egg-info to build/bdist.linux-armv7l/wheel/BioSAK-1.18.7-py3.5.egg-info
2019-11-05T05:27:28   running install_scripts
2019-11-05T05:27:28   creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.7.data
2019-11-05T05:27:28   creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.7.data/scripts
2019-11-05T05:27:28   copying build/scripts-3.5/BioSAK -> build/bdist.linux-armv7l/wheel/BioSAK-1.18.7.data/scripts
2019-11-05T05:27:28   changing mode of build/bdist.linux-armv7l/wheel/BioSAK-1.18.7.data/scripts/BioSAK to 755
2019-11-05T05:27:28   creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.7.dist-info/WHEEL
2019-11-05T05:27:30   Building wheel for BioSAK (setup.py): finished with status 'done'
2019-11-05T05:27:30   Stored in directory: /tmp/tmptaiwv8x4
2019-11-05T05:27:30 Successfully built BioSAK
2019-11-05T05:27:30 Cleaning up...
2019-11-05T05:27:30   Removing source in /tmp/pip-wheel-_46f8ydi/BioSAK
2019-11-05T05:27:30 Removed build tracker '/tmp/pip-req-tracker-kdtab2he'