2019-11-05T11:11:25 Created temporary directory: /tmp/pip-ephem-wheel-cache-2heobcit
2019-11-05T11:11:25 Created temporary directory: /tmp/pip-req-tracker-j8fwh3io
2019-11-05T11:11:25 Created requirements tracker '/tmp/pip-req-tracker-j8fwh3io'
2019-11-05T11:11:25 Created temporary directory: /tmp/pip-wheel-enusuo4x
2019-11-05T11:11:25 Collecting BioSAK==1.18.8
2019-11-05T11:11:25   1 location(s) to search for versions of BioSAK:
2019-11-05T11:11:25   * https://pypi.org/simple/biosak/
2019-11-05T11:11:25   Getting page https://pypi.org/simple/biosak/
2019-11-05T11:11:25   Analyzing links from page https://pypi.org/simple/biosak/
2019-11-05T11:11:25     Skipping link https://files.pythonhosted.org/packages/28/97/e3a111da00ce805e2944c6404cb03c464d4e86e71df0d3aa7c43a7fd4433/BioSAK-1.18.6-py2-none-any.whl#sha256=a91ae2c9be3875559d6d8a237132e5979c42e0d1f82e673dab162018256bf317 (from https://pypi.org/simple/biosak/); it is not compatible with this Python
2019-11-05T11:11:25     Found link https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 (from https://pypi.org/simple/biosak/), version: 1.18.6
2019-11-05T11:11:25     Skipping link https://files.pythonhosted.org/packages/fa/58/808c6d99f57841312c9c2c29fdebab5f4f00b2b937e22d6676840b8cf5d1/BioSAK-1.18.7-py2-none-any.whl#sha256=426c86737f2cdfee9f3c4c44f4fd930fa562602f52dc4a055ea969b89f4dfa83 (from https://pypi.org/simple/biosak/); it is not compatible with this Python
2019-11-05T11:11:25     Found link https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545 (from https://pypi.org/simple/biosak/), version: 1.18.7
2019-11-05T11:11:25     Skipping link https://files.pythonhosted.org/packages/5f/f0/686ebc7bef4a6ea8fd7fe1958941a663f4af3bd5216b5679879b2218ecaa/BioSAK-1.18.8-py2-none-any.whl#sha256=e46e393f606a6972eae89dab76fae24b8aa7560893f1c5a4d7dc2eaa6ce2a0e6 (from https://pypi.org/simple/biosak/); it is not compatible with this Python
2019-11-05T11:11:25     Found link https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz#sha256=e160037f4e4f36bea85c5d4d886d8517d52d9df54f6514113063e210e40e616f (from https://pypi.org/simple/biosak/), version: 1.18.8
2019-11-05T11:11:25   Using version 1.18.8 (newest of versions: 1.18.8)
2019-11-05T11:11:25   Created temporary directory: /tmp/pip-unpack-5th9gy8d
2019-11-05T11:11:25   Downloading https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz (738kB)
2019-11-05T11:11:25   Downloading from URL https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz#sha256=e160037f4e4f36bea85c5d4d886d8517d52d9df54f6514113063e210e40e616f (from https://pypi.org/simple/biosak/)
2019-11-05T11:11:26   Added BioSAK==1.18.8 from https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz#sha256=e160037f4e4f36bea85c5d4d886d8517d52d9df54f6514113063e210e40e616f to build tracker '/tmp/pip-req-tracker-j8fwh3io'
2019-11-05T11:11:26     Running setup.py (path:/tmp/pip-wheel-enusuo4x/BioSAK/setup.py) egg_info for package BioSAK
2019-11-05T11:11:26     Running command python setup.py egg_info
2019-11-05T11:11:28     running egg_info
2019-11-05T11:11:28     creating pip-egg-info/BioSAK.egg-info
2019-11-05T11:11:28     writing top-level names to pip-egg-info/BioSAK.egg-info/top_level.txt
2019-11-05T11:11:28     writing pip-egg-info/BioSAK.egg-info/PKG-INFO
2019-11-05T11:11:28     writing requirements to pip-egg-info/BioSAK.egg-info/requires.txt
2019-11-05T11:11:28     writing dependency_links to pip-egg-info/BioSAK.egg-info/dependency_links.txt
2019-11-05T11:11:28     writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt'
2019-11-05T11:11:29     reading manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt'
2019-11-05T11:11:29     reading manifest template 'MANIFEST.in'
2019-11-05T11:11:29     warning: no files found matching 'BioSAK/select_contig.pl'
2019-11-05T11:11:29     warning: no files found matching 'BioSAK/get_fasta_stats.pl'
2019-11-05T11:11:29     writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt'
2019-11-05T11:11:29   Source in /tmp/pip-wheel-enusuo4x/BioSAK has version 1.18.8, which satisfies requirement BioSAK==1.18.8 from https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz#sha256=e160037f4e4f36bea85c5d4d886d8517d52d9df54f6514113063e210e40e616f
2019-11-05T11:11:29   Removed BioSAK==1.18.8 from https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz#sha256=e160037f4e4f36bea85c5d4d886d8517d52d9df54f6514113063e210e40e616f from build tracker '/tmp/pip-req-tracker-j8fwh3io'
2019-11-05T11:11:29 Building wheels for collected packages: BioSAK
2019-11-05T11:11:29   Created temporary directory: /tmp/pip-wheel-ajwi2p95
2019-11-05T11:11:29   Building wheel for BioSAK (setup.py): started
2019-11-05T11:11:29   Destination directory: /tmp/pip-wheel-ajwi2p95
2019-11-05T11:11:29   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-enusuo4x/BioSAK/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ajwi2p95
2019-11-05T11:11:31   running bdist_wheel
2019-11-05T11:11:31   running build
2019-11-05T11:11:31   running build_py
2019-11-05T11:11:31   creating build
2019-11-05T11:11:31   creating build/lib
2019-11-05T11:11:31   creating build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/COG2003.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/boxplot_matrix_KEGG.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/get_reads_from_sam.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/manipulator_fasta.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/CheckM.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/manipulator_msa.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/download_GenBank_genome.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/Reads_simulator.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/Prokka.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/get_gc.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/keep_best_hit.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/boxplot_matrix_COG_backup.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/manipulator_newick.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/sep_reads_by_barcode.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/Newick_tree_plotter.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/manipulator_sam.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/FastaSplitler_by_num.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/get_aa_composition.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/global_functions.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/tmp_4.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/BacDive.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/sra_reads_downloader.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/boxplot_matrix_COG.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/Prodigal.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/fq2fa.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/dbCAN.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/label_tree.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/get_bin_abundance.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/Gene2Ctg.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/format_converter.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/Subset_tree.py -> build/lib/BioSAK
2019-11-05T11:11:31   copying BioSAK/get_total_length.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/get_gene_depth.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/split_folder.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/__init__.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/plot_sam_depth.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/iTOL_wrapper.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/Barrnap.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/SankeyTaxon.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/KEGG_get_eukaryotic_kos.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/KEGG.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/get_Pfam_hmms.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/COG2014.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/FastaSplitler_by_size.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/select_seq.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/gbk_to_ffn_faa.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/get_SCG_tree.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/BioSAK_config.py -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/get_bin_abundance_backup.py -> build/lib/BioSAK
2019-11-05T11:11:32   running egg_info
2019-11-05T11:11:32   writing top-level names to BioSAK.egg-info/top_level.txt
2019-11-05T11:11:32   writing dependency_links to BioSAK.egg-info/dependency_links.txt
2019-11-05T11:11:32   writing requirements to BioSAK.egg-info/requires.txt
2019-11-05T11:11:32   writing BioSAK.egg-info/PKG-INFO
2019-11-05T11:11:32   reading manifest file 'BioSAK.egg-info/SOURCES.txt'
2019-11-05T11:11:32   reading manifest template 'MANIFEST.in'
2019-11-05T11:11:32   warning: no files found matching 'BioSAK/select_contig.pl'
2019-11-05T11:11:32   warning: no files found matching 'BioSAK/get_fasta_stats.pl'
2019-11-05T11:11:32   writing manifest file 'BioSAK.egg-info/SOURCES.txt'
2019-11-05T11:11:32   copying BioSAK/MetaCHIP_phylo.hmm -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/VERSION -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/cdd2cog.pl -> build/lib/BioSAK
2019-11-05T11:11:32   copying BioSAK/get_sankey_plot.R -> build/lib/BioSAK
2019-11-05T11:11:32   running build_scripts
2019-11-05T11:11:32   creating build/scripts-3.5
2019-11-05T11:11:32   copying and adjusting bin/BioSAK -> build/scripts-3.5
2019-11-05T11:11:32   changing mode of build/scripts-3.5/BioSAK from 644 to 755
2019-11-05T11:11:32   installing to build/bdist.linux-armv7l/wheel
2019-11-05T11:11:32   running install
2019-11-05T11:11:32   running install_lib
2019-11-05T11:11:32   creating build/bdist.linux-armv7l
2019-11-05T11:11:32   creating build/bdist.linux-armv7l/wheel
2019-11-05T11:11:32   creating build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/COG2003.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/boxplot_matrix_KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/get_reads_from_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/manipulator_fasta.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/CheckM.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/manipulator_msa.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/download_GenBank_genome.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/Reads_simulator.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/Prokka.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/cdd2cog.pl -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/get_gc.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/keep_best_hit.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/boxplot_matrix_COG_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/manipulator_newick.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/sep_reads_by_barcode.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/Newick_tree_plotter.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/manipulator_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/FastaSplitler_by_num.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/get_aa_composition.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/global_functions.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/tmp_4.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/BacDive.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/sra_reads_downloader.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/VERSION -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/boxplot_matrix_COG.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/Prodigal.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/fq2fa.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/dbCAN.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/label_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:32   copying build/lib/BioSAK/MetaCHIP_phylo.hmm -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_bin_abundance.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/Gene2Ctg.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/format_converter.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/Subset_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_total_length.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_gene_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/split_folder.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/__init__.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/plot_sam_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/iTOL_wrapper.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/Barrnap.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/SankeyTaxon.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/KEGG_get_eukaryotic_kos.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_Pfam_hmms.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/COG2014.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/FastaSplitler_by_size.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/select_seq.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/gbk_to_ffn_faa.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_SCG_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_sankey_plot.R -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/BioSAK_config.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   copying build/lib/BioSAK/get_bin_abundance_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK
2019-11-05T11:11:33   running install_egg_info
2019-11-05T11:11:33   Copying BioSAK.egg-info to build/bdist.linux-armv7l/wheel/BioSAK-1.18.8-py3.5.egg-info
2019-11-05T11:11:33   running install_scripts
2019-11-05T11:11:33   creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.8.data
2019-11-05T11:11:33   creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.8.data/scripts
2019-11-05T11:11:33   copying build/scripts-3.5/BioSAK -> build/bdist.linux-armv7l/wheel/BioSAK-1.18.8.data/scripts
2019-11-05T11:11:33   changing mode of build/bdist.linux-armv7l/wheel/BioSAK-1.18.8.data/scripts/BioSAK to 755
2019-11-05T11:11:33   creating build/bdist.linux-armv7l/wheel/BioSAK-1.18.8.dist-info/WHEEL
2019-11-05T11:11:35   Building wheel for BioSAK (setup.py): finished with status 'done'
2019-11-05T11:11:35   Stored in directory: /tmp/tmpg9nhfkru
2019-11-05T11:11:35 Successfully built BioSAK
2019-11-05T11:11:35 Cleaning up...
2019-11-05T11:11:35   Removing source in /tmp/pip-wheel-enusuo4x/BioSAK
2019-11-05T11:11:35 Removed build tracker '/tmp/pip-req-tracker-j8fwh3io'