2019-11-06T09:09:52 Created temporary directory: /tmp/pip-ephem-wheel-cache-di5zm03y 2019-11-06T09:09:52 Created temporary directory: /tmp/pip-req-tracker-t0te1noy 2019-11-06T09:09:52 Created requirements tracker '/tmp/pip-req-tracker-t0te1noy' 2019-11-06T09:09:52 Created temporary directory: /tmp/pip-wheel-er8c23jg 2019-11-06T09:09:52 Collecting cobs-index==0.1 2019-11-06T09:09:52 1 location(s) to search for versions of cobs-index: 2019-11-06T09:09:52 * https://pypi.org/simple/cobs-index/ 2019-11-06T09:09:52 Getting page https://pypi.org/simple/cobs-index/ 2019-11-06T09:09:52 Analyzing links from page https://pypi.org/simple/cobs-index/ 2019-11-06T09:09:52 Found link https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz#sha256=48db611e5725ad669347c4097e1c6b06b3b21f104e3c7d182c5734367d70248a (from https://pypi.org/simple/cobs-index/), version: 0.1 2019-11-06T09:09:52 Using version 0.1 (newest of versions: 0.1) 2019-11-06T09:09:52 Created temporary directory: /tmp/pip-unpack-6wugvgjz 2019-11-06T09:09:52 Downloading https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz (2.7MB) 2019-11-06T09:09:52 Downloading from URL https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz#sha256=48db611e5725ad669347c4097e1c6b06b3b21f104e3c7d182c5734367d70248a (from https://pypi.org/simple/cobs-index/) 2019-11-06T09:09:57 Added cobs-index==0.1 from https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz#sha256=48db611e5725ad669347c4097e1c6b06b3b21f104e3c7d182c5734367d70248a to build tracker '/tmp/pip-req-tracker-t0te1noy' 2019-11-06T09:09:57 Running setup.py (path:/tmp/pip-wheel-er8c23jg/cobs-index/setup.py) egg_info for package cobs-index 2019-11-06T09:09:57 Running command python setup.py egg_info 2019-11-06T09:09:59 running egg_info 2019-11-06T09:09:59 creating pip-egg-info/cobs_index.egg-info 2019-11-06T09:09:59 writing pip-egg-info/cobs_index.egg-info/PKG-INFO 2019-11-06T09:09:59 writing dependency_links to pip-egg-info/cobs_index.egg-info/dependency_links.txt 2019-11-06T09:09:59 writing top-level names to pip-egg-info/cobs_index.egg-info/top_level.txt 2019-11-06T09:09:59 writing manifest file 'pip-egg-info/cobs_index.egg-info/SOURCES.txt' 2019-11-06T09:09:59 reading manifest file 'pip-egg-info/cobs_index.egg-info/SOURCES.txt' 2019-11-06T09:09:59 reading manifest template 'MANIFEST.in' 2019-11-06T09:10:00 warning: no previously-included files matching '.git' found under directory 'extlib' 2019-11-06T09:10:00 warning: no previously-included files matching '.git' found under directory 'python/pybind11' 2019-11-06T09:10:00 writing manifest file 'pip-egg-info/cobs_index.egg-info/SOURCES.txt' 2019-11-06T09:10:00 Source in /tmp/pip-wheel-er8c23jg/cobs-index has version 0.1, which satisfies requirement cobs-index==0.1 from https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz#sha256=48db611e5725ad669347c4097e1c6b06b3b21f104e3c7d182c5734367d70248a 2019-11-06T09:10:00 Removed cobs-index==0.1 from https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz#sha256=48db611e5725ad669347c4097e1c6b06b3b21f104e3c7d182c5734367d70248a from build tracker '/tmp/pip-req-tracker-t0te1noy' 2019-11-06T09:10:00 Building wheels for collected packages: cobs-index 2019-11-06T09:10:00 Created temporary directory: /tmp/pip-wheel-pno8pa9g 2019-11-06T09:10:00 Building wheel for cobs-index (setup.py): started 2019-11-06T09:10:00 Destination directory: /tmp/pip-wheel-pno8pa9g 2019-11-06T09:10:00 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-er8c23jg/cobs-index/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pno8pa9g 2019-11-06T09:10:02 running bdist_wheel 2019-11-06T09:10:02 running build 2019-11-06T09:10:02 running build_ext 2019-11-06T09:10:03 -- The C compiler identification is GNU 8.3.0 2019-11-06T09:10:03 -- The CXX compiler identification is GNU 8.3.0 2019-11-06T09:10:03 -- Check for working C compiler: /usr/bin/cc 2019-11-06T09:10:04 -- Check for working C compiler: /usr/bin/cc -- works 2019-11-06T09:10:04 -- Detecting C compiler ABI info 2019-11-06T09:10:05 -- Detecting C compiler ABI info - done 2019-11-06T09:10:05 -- Detecting C compile features 2019-11-06T09:10:07 -- Detecting C compile features - done 2019-11-06T09:10:07 -- Check for working CXX compiler: /usr/bin/c++ 2019-11-06T09:10:07 -- Check for working CXX compiler: /usr/bin/c++ -- works 2019-11-06T09:10:07 -- Detecting CXX compiler ABI info 2019-11-06T09:10:08 -- Detecting CXX compiler ABI info - done 2019-11-06T09:10:08 -- Detecting CXX compile features 2019-11-06T09:10:13 -- Detecting CXX compile features - done 2019-11-06T09:10:13 -- COBS CMAKE_CXX_FLAGS:-DVERSION_INFO=\"0.1\" -fopenmp -Wpedantic -W -Wall -march=native -fPIC 2019-11-06T09:10:14 -- Looking for pthread.h 2019-11-06T09:10:15 -- Looking for pthread.h - found 2019-11-06T09:10:15 -- Looking for pthread_create 2019-11-06T09:10:15 -- Looking for pthread_create - found 2019-11-06T09:10:15 -- Found Threads: TRUE 2019-11-06T09:10:16 -- Found PythonInterp: /usr/bin/python3 (found version "3.7.3") 2019-11-06T09:10:16 -- Performing Test CFLAG_Wall 2019-11-06T09:10:16 -- Performing Test CFLAG_Wall - Success 2019-11-06T09:10:16 -- Performing Test CFLAG_Wextra 2019-11-06T09:10:17 -- Performing Test CFLAG_Wextra - Success 2019-11-06T09:10:17 -- Performing Test CFLAG_Wcast_qual 2019-11-06T09:10:18 -- Performing Test CFLAG_Wcast_qual - Success 2019-11-06T09:10:18 -- Performing Test CFLAG_Wcast_align 2019-11-06T09:10:18 -- Performing Test CFLAG_Wcast_align - Success 2019-11-06T09:10:18 -- Performing Test CFLAG_Wshadow 2019-11-06T09:10:19 -- Performing Test CFLAG_Wshadow - Success 2019-11-06T09:10:19 -- Performing Test CFLAG_Wstrict_aliasing_1 2019-11-06T09:10:20 -- Performing Test CFLAG_Wstrict_aliasing_1 - Success 2019-11-06T09:10:20 -- Performing Test CFLAG_Wswitch_enum 2019-11-06T09:10:20 -- Performing Test CFLAG_Wswitch_enum - Success 2019-11-06T09:10:20 -- Performing Test CFLAG_Wdeclaration_after_statement 2019-11-06T09:10:21 -- Performing Test CFLAG_Wdeclaration_after_statement - Success 2019-11-06T09:10:21 -- Performing Test CFLAG_Wstrict_prototypes 2019-11-06T09:10:21 -- Performing Test CFLAG_Wstrict_prototypes - Success 2019-11-06T09:10:21 -- Performing Test CFLAG_Wundef 2019-11-06T09:10:22 -- Performing Test CFLAG_Wundef - Success 2019-11-06T09:10:22 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2019-11-06T09:10:22 -- Could NOT find Boost 2019-11-06T09:10:22 -- Performing Test TLX_CXX_HAS_CXX17 2019-11-06T09:10:23 -- Performing Test TLX_CXX_HAS_CXX17 - Success 2019-11-06T09:10:23 -- TLX CMAKE_CXX_FLAGS: -Wshadow -Wold-style-cast -std=c++17 -g -W -Wall -Wextra -fPIC -DVERSION_INFO=\"0.1\" -fopenmp -Wpedantic -W -Wall -march=native -fPIC -Wcast-qual -Winit-self -Wnoexcept -Woverloaded-virtual -Wredundant-decls 2019-11-06T09:10:24 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.7m.so 2019-11-06T09:10:24 -- pybind11 v2.4.3 2019-11-06T09:10:24 -- Performing Test HAS_FLTO 2019-11-06T09:10:25 -- Performing Test HAS_FLTO - Success 2019-11-06T09:10:25 -- LTO enabled 2019-11-06T09:10:25 -- Configuring done 2019-11-06T09:10:26 -- Generating done 2019-11-06T09:10:26 -- Build files have been written to: /tmp/pip-wheel-er8c23jg/cobs-index/build/temp.linux-armv7l-3.7 2019-11-06T09:10:27 Scanning dependencies of target xxhash 2019-11-06T09:10:27 [ 1%] Building C object extlib/xxhash/cmake_unofficial/CMakeFiles/xxhash.dir/__/xxhash.c.o 2019-11-06T09:10:27 Scanning dependencies of target tlx 2019-11-06T09:10:27 [ 2%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/algorithm/parallel_multiway_merge.cpp.o 2019-11-06T09:10:31 [ 3%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/backtrace.cpp.o 2019-11-06T09:10:31 [ 5%] Linking C static library libxxhash.a 2019-11-06T09:10:31 [ 6%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/cmdline_parser.cpp.o 2019-11-06T09:10:32 [ 6%] Built target xxhash 2019-11-06T09:10:32 [ 7%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/die/core.cpp.o 2019-11-06T09:10:36 [ 9%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/md5.cpp.o 2019-11-06T09:10:39 [ 10%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/sha1.cpp.o 2019-11-06T09:10:41 [ 11%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/sha256.cpp.o 2019-11-06T09:10:44 [ 13%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/sha512.cpp.o 2019-11-06T09:10:48 [ 14%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/logger/core.cpp.o 2019-11-06T09:10:50 [ 15%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/multi_timer.cpp.o 2019-11-06T09:10:52 [ 17%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/port/setenv.cpp.o 2019-11-06T09:10:53 [ 18%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/appendline.cpp.o 2019-11-06T09:10:54 In file included from /usr/include/c++/8/vector:69, 2019-11-06T09:10:54 from /tmp/pip-wheel-er8c23jg/cobs-index/extlib/tlx/tlx/multi_timer.hpp:16, 2019-11-06T09:10:54 from /tmp/pip-wheel-er8c23jg/cobs-index/extlib/tlx/tlx/multi_timer.cpp:11: 2019-11-06T09:10:54 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {tlx::MultiTimer::Entry&}; _Tp = tlx::MultiTimer::Entry; _Alloc = std::allocator]’: 2019-11-06T09:10:54 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2019-11-06T09:10:54 vector<_Tp, _Alloc>:: 2019-11-06T09:10:54 ^~~~~~~~~~~~~~~~~~~ 2019-11-06T09:10:54 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2019-11-06T09:10:54 /usr/include/c++/8/bits/vector.tcc: In member function ‘tlx::MultiTimer::Entry& tlx::MultiTimer::find_or_create(const char*)’: 2019-11-06T09:10:54 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2019-11-06T09:10:54 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2019-11-06T09:10:54 ^~~~~~~~~~~~~~~~~ 2019-11-06T09:10:55 [ 19%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/base64.cpp.o 2019-11-06T09:10:55 [ 21%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/bitdump.cpp.o 2019-11-06T09:10:57 [ 22%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/compare_icase.cpp.o 2019-11-06T09:10:57 [ 23%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/contains.cpp.o 2019-11-06T09:10:59 [ 25%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/contains_word.cpp.o 2019-11-06T09:10:59 [ 26%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/ends_with.cpp.o 2019-11-06T09:11:01 [ 27%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/equal_icase.cpp.o 2019-11-06T09:11:01 [ 28%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/erase_all.cpp.o 2019-11-06T09:11:03 [ 30%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/escape_html.cpp.o 2019-11-06T09:11:04 [ 31%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/escape_uri.cpp.o 2019-11-06T09:11:05 [ 32%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/expand_environment_variables.cpp.o 2019-11-06T09:11:06 [ 34%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/extract_between.cpp.o 2019-11-06T09:11:08 [ 35%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/format_si_iec_units.cpp.o 2019-11-06T09:11:08 [ 36%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/hexdump.cpp.o 2019-11-06T09:11:11 [ 38%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/index_of.cpp.o 2019-11-06T09:11:12 [ 39%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/join.cpp.o 2019-11-06T09:11:14 [ 40%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/join_quoted.cpp.o 2019-11-06T09:11:16 [ 42%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/less_icase.cpp.o 2019-11-06T09:11:16 [ 43%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/pad.cpp.o 2019-11-06T09:11:18 [ 44%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/parse_si_iec_units.cpp.o 2019-11-06T09:11:18 [ 46%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/replace.cpp.o 2019-11-06T09:11:20 [ 47%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/split.cpp.o 2019-11-06T09:11:22 [ 48%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/split_quoted.cpp.o 2019-11-06T09:11:24 [ 50%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/split_words.cpp.o 2019-11-06T09:11:25 [ 51%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/ssprintf.cpp.o 2019-11-06T09:11:27 [ 52%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/starts_with.cpp.o 2019-11-06T09:11:27 [ 53%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/to_lower.cpp.o 2019-11-06T09:11:29 [ 55%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/to_upper.cpp.o 2019-11-06T09:11:29 [ 56%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/trim.cpp.o 2019-11-06T09:11:31 [ 57%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/union_words.cpp.o 2019-11-06T09:11:32 [ 59%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/word_wrap.cpp.o 2019-11-06T09:11:33 [ 60%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/thread_pool.cpp.o 2019-11-06T09:11:34 [ 61%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/timestamp.cpp.o 2019-11-06T09:11:39 [ 63%] Linking CXX static library libtlx.a 2019-11-06T09:11:43 [ 63%] Built target tlx 2019-11-06T09:11:43 Scanning dependencies of target cobs_static 2019-11-06T09:11:43 [ 65%] Building CXX object cobs/CMakeFiles/cobs_static.dir/construction/classic_index.cpp.o 2019-11-06T09:11:43 [ 65%] Building CXX object cobs/CMakeFiles/cobs_static.dir/construction/compact_index.cpp.o 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp: In function ‘void cobs::compact_combine_into_compact(const std::experimental::filesystem::v1::__cxx11::path&, const std::experimental::filesystem::v1::__cxx11::path&, uint64_t, uint64_t, bool)’: 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:118:64: error: no matching function for call to ‘min(size_t&, long long unsigned int)’ 2019-11-06T09:11:50 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:50 from /usr/include/c++/8/string:40, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T09:11:50 min(const _Tp& __a, const _Tp& __b) 2019-11-06T09:11:50 ^~~ 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:118:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T09:11:50 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:50 from /usr/include/c++/8/string:40, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T09:11:50 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T09:11:50 ^~~ 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:118:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T09:11:50 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T09:11:50 min(initializer_list<_Tp> __l) 2019-11-06T09:11:50 ^~~ 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:118:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:50 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T09:11:50 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T09:11:50 ^~~ 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:118:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:50 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:127:78: error: no matching function for call to ‘min(size_t&, uint64_t)’ 2019-11-06T09:11:50 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:50 from /usr/include/c++/8/string:40, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T09:11:50 min(const _Tp& __a, const _Tp& __b) 2019-11-06T09:11:50 ^~~ 2019-11-06T09:11:50 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:50 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:127:78: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T09:11:50 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T09:11:50 ^ 2019-11-06T09:11:50 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:50 from /usr/include/c++/8/string:40, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:50 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T09:11:51 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:127:78: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T09:11:51 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T09:11:51 min(initializer_list<_Tp> __l) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:127:78: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:51 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T09:11:51 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/compact_index.cpp:127:78: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:51 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp: In function ‘void cobs::classic_construct_from_documents(const cobs::DocumentList&, const std::experimental::filesystem::v1::__cxx11::path&, const cobs::ClassicIndexParameters&)’: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:136:60: error: no matching function for call to ‘max(long unsigned int, unsigned int)’ 2019-11-06T09:11:51 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:51 from /usr/include/c++/8/ios:40, 2019-11-06T09:11:51 from /usr/include/c++/8/istream:38, 2019-11-06T09:11:51 from /usr/include/c++/8/fstream:38, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:219:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2019-11-06T09:11:51 max(const _Tp& __a, const _Tp& __b) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:219:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:136:60: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 2019-11-06T09:11:51 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:51 from /usr/include/c++/8/ios:40, 2019-11-06T09:11:51 from /usr/include/c++/8/istream:38, 2019-11-06T09:11:51 from /usr/include/c++/8/fstream:38, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:265:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T09:11:51 max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:265:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:136:60: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 2019-11-06T09:11:51 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3462:5: note: candidate: ‘template constexpr _Tp std::max(std::initializer_list<_Tp>)’ 2019-11-06T09:11:51 max(initializer_list<_Tp> __l) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3462:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:136:60: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 2019-11-06T09:11:51 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3468:5: note: candidate: ‘template constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T09:11:51 max(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3468:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:136:60: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 2019-11-06T09:11:51 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:139:68: error: no matching function for call to ‘min(size_t&, long long unsigned int)’ 2019-11-06T09:11:51 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:51 from /usr/include/c++/8/ios:40, 2019-11-06T09:11:51 from /usr/include/c++/8/istream:38, 2019-11-06T09:11:51 from /usr/include/c++/8/fstream:38, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T09:11:51 min(const _Tp& __a, const _Tp& __b) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:139:68: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T09:11:51 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:51 from /usr/include/c++/8/ios:40, 2019-11-06T09:11:51 from /usr/include/c++/8/istream:38, 2019-11-06T09:11:51 from /usr/include/c++/8/fstream:38, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T09:11:51 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:139:68: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T09:11:51 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T09:11:51 min(initializer_list<_Tp> __l) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:139:68: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:51 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T09:11:51 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:139:68: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:51 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp: In function ‘void cobs::classic_combine_streams(std::vector >&, std::vector&, const std::experimental::filesystem::v1::__cxx11::path&, unsigned int, uint8_t, uint64_t, uint64_t, uint64_t, uint64_t, cobs::Timer&, const std::vector >&)’: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:249:62: error: no matching function for call to ‘min(size_t&, uint64_t)’ 2019-11-06T09:11:51 std::min(batch_size, signature_size - current_row); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:51 from /usr/include/c++/8/ios:40, 2019-11-06T09:11:51 from /usr/include/c++/8/istream:38, 2019-11-06T09:11:51 from /usr/include/c++/8/fstream:38, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T09:11:51 min(const _Tp& __a, const _Tp& __b) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:249:62: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T09:11:51 std::min(batch_size, signature_size - current_row); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T09:11:51 from /usr/include/c++/8/ios:40, 2019-11-06T09:11:51 from /usr/include/c++/8/istream:38, 2019-11-06T09:11:51 from /usr/include/c++/8/fstream:38, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T09:11:51 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:249:62: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T09:11:51 std::min(batch_size, signature_size - current_row); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T09:11:51 min(initializer_list<_Tp> __l) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:249:62: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:51 std::min(batch_size, signature_size - current_row); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:51 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/document_list.hpp:12, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T09:11:51 from /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T09:11:51 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T09:11:51 ^~~ 2019-11-06T09:11:51 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T09:11:51 /tmp/pip-wheel-er8c23jg/cobs-index/cobs/construction/classic_index.cpp:249:62: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T09:11:51 std::min(batch_size, signature_size - current_row); 2019-11-06T09:11:51 ^ 2019-11-06T09:11:53 make[3]: *** [cobs/CMakeFiles/cobs_static.dir/build.make:76: cobs/CMakeFiles/cobs_static.dir/construction/compact_index.cpp.o] Error 1 2019-11-06T09:11:53 make[3]: *** Waiting for unfinished jobs.... 2019-11-06T09:11:54 make[3]: *** [cobs/CMakeFiles/cobs_static.dir/build.make:63: cobs/CMakeFiles/cobs_static.dir/construction/classic_index.cpp.o] Error 1 2019-11-06T09:11:54 make[2]: *** [CMakeFiles/Makefile2:468: cobs/CMakeFiles/cobs_static.dir/all] Error 2 2019-11-06T09:11:54 make[1]: *** [CMakeFiles/Makefile2:655: python/CMakeFiles/cobs_python.dir/rule] Error 2 2019-11-06T09:11:54 make: *** [Makefile:305: cobs_python] Error 2 2019-11-06T09:11:54 Traceback (most recent call last): 2019-11-06T09:11:54 File "", line 1, in 2019-11-06T09:11:54 File "/tmp/pip-wheel-er8c23jg/cobs-index/setup.py", line 88, in 2019-11-06T09:11:54 "Topic :: Text Processing :: Indexing" 2019-11-06T09:11:54 File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 145, in setup 2019-11-06T09:11:54 return distutils.core.setup(**attrs) 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/core.py", line 148, in setup 2019-11-06T09:11:54 dist.run_commands() 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands 2019-11-06T09:11:54 self.run_command(cmd) 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command 2019-11-06T09:11:54 cmd_obj.run() 2019-11-06T09:11:54 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run 2019-11-06T09:11:54 self.run_command('build') 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command 2019-11-06T09:11:54 self.distribution.run_command(command) 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command 2019-11-06T09:11:54 cmd_obj.run() 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run 2019-11-06T09:11:54 self.run_command(cmd_name) 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command 2019-11-06T09:11:54 self.distribution.run_command(command) 2019-11-06T09:11:54 File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command 2019-11-06T09:11:54 cmd_obj.run() 2019-11-06T09:11:54 File "/tmp/pip-wheel-er8c23jg/cobs-index/setup.py", line 31, in run 2019-11-06T09:11:54 self.build_extension(ext) 2019-11-06T09:11:54 File "/tmp/pip-wheel-er8c23jg/cobs-index/setup.py", line 60, in build_extension 2019-11-06T09:11:54 cwd=self.build_temp) 2019-11-06T09:11:54 File "/usr/lib/python3.7/subprocess.py", line 347, in check_call 2019-11-06T09:11:54 raise CalledProcessError(retcode, cmd) 2019-11-06T09:11:54 subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--target', 'cobs_python', '--config', 'Release', '--', '-j2']' returned non-zero exit status 2. 2019-11-06T09:11:54 Building wheel for cobs-index (setup.py): finished with status 'error' 2019-11-06T09:11:54 ERROR: Failed building wheel for cobs-index 2019-11-06T09:11:54 Running setup.py clean for cobs-index 2019-11-06T09:11:54 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-er8c23jg/cobs-index/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2019-11-06T09:11:56 running clean 2019-11-06T09:11:56 removing 'build/temp.linux-armv7l-3.7' (and everything under it) 2019-11-06T09:11:56 removing 'build/lib.linux-armv7l-3.7' (and everything under it) 2019-11-06T09:11:56 'build/bdist.linux-armv7l' does not exist -- can't clean it 2019-11-06T09:11:56 'build/scripts-3.7' does not exist -- can't clean it 2019-11-06T09:11:56 removing 'build' 2019-11-06T09:11:57 Failed to build cobs-index 2019-11-06T09:11:57 Cleaning up... 2019-11-06T09:11:57 Removing source in /tmp/pip-wheel-er8c23jg/cobs-index 2019-11-06T09:11:57 Removed build tracker '/tmp/pip-req-tracker-t0te1noy' 2019-11-06T09:11:57 ERROR: Failed to build one or more wheels 2019-11-06T09:11:57 Exception information: 2019-11-06T09:11:57 Traceback (most recent call last): 2019-11-06T09:11:57 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main 2019-11-06T09:11:57 status = self.run(options, args) 2019-11-06T09:11:57 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run 2019-11-06T09:11:57 "Failed to build one or more wheels" 2019-11-06T09:11:57 pip._internal.exceptions.CommandError: Failed to build one or more wheels