2019-11-06T10:37:10 Created temporary directory: /tmp/pip-ephem-wheel-cache-rspicmyt 2019-11-06T10:37:10 Created temporary directory: /tmp/pip-req-tracker-c65vyios 2019-11-06T10:37:10 Created requirements tracker '/tmp/pip-req-tracker-c65vyios' 2019-11-06T10:37:10 Created temporary directory: /tmp/pip-wheel-92k3f0lr 2019-11-06T10:37:10 Collecting cobs-index==0.1.1 2019-11-06T10:37:10 1 location(s) to search for versions of cobs-index: 2019-11-06T10:37:10 * https://pypi.org/simple/cobs-index/ 2019-11-06T10:37:10 Getting page https://pypi.org/simple/cobs-index/ 2019-11-06T10:37:10 Analyzing links from page https://pypi.org/simple/cobs-index/ 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/48/f4/53a17966431a603a6bebec7abfdf77ab8b74d35878b7e90d5a1fc42b1d28/cobs_index-0.1-cp27-cp27m-manylinux2010_x86_64.whl#sha256=28e9cb8840ff406eacc7b16b45ac8e81f9ca597306ab0fb58e304a8b7f7c44b9 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/3d/c9/d1887a9556161df621df8faf7842b9679d01f9300614bb2a641ba57c7adb/cobs_index-0.1-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=0af88224dc4f59b48c8605349e109810b1a0d6f2fe2049a3474982b26b921053 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/f1/9e/fceee898d5b268007121e39151beceebab96536c9e9174057f699683b7e6/cobs_index-0.1-cp34-cp34m-manylinux2010_x86_64.whl#sha256=d228ec8575450a16a5ef9c77aa6317ef2ef0590753e274684fb36c0f31b080cb (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/18/1b/e4ad25ee35753d346fab1b0f572f2e49ba0e26177dca92d7e2071711ece6/cobs_index-0.1-cp35-cp35m-manylinux2010_x86_64.whl#sha256=ff3f023a995e40283ff03687690c098d22b8600cbb6d967d530ac29f01416676 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/01/22/0938f7abd85bf7ddd8cb7e50d71f870586ffbd930e9806935af756cfc070/cobs_index-0.1-cp36-cp36m-manylinux2010_x86_64.whl#sha256=4d05df01294fa17f69776180c4193952b67554744f64fe96e483f1f03bbb9973 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/d9/ce/ab21a5ed2acb93f010cdfa2e455d335d34ac5f9294f09aa8aaee2bc36c61/cobs_index-0.1-cp37-cp37m-manylinux2010_x86_64.whl#sha256=8b2b4b7123a1b2ad9f182eba8479176e3d533af678c62175b26480912c30b7f5 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/18/d9/7246296b7d1e8aad2705030a47c9d79b8498a30a77d06998c5edfb7cf8ae/cobs_index-0.1-cp38-cp38-manylinux2010_x86_64.whl#sha256=32f1db9b6d2e3364a83be5de103c445051ef290f778fc5c86becf4bc8477f9ec (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Found link https://files.pythonhosted.org/packages/da/f7/06c834a80edaeae41d8d86fa21d09fc8df05cb76c675d570aa0e025d5e53/cobs_index-0.1.tar.gz#sha256=48db611e5725ad669347c4097e1c6b06b3b21f104e3c7d182c5734367d70248a (from https://pypi.org/simple/cobs-index/), version: 0.1 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/e5/12/1e0a7623a74a9e3816b4e52c2c5d5285723c28b65f4759e1bec67bdb7538/cobs_index-0.1.1-cp27-cp27m-manylinux2010_x86_64.whl#sha256=ff521818426e14b16a7dccc745cd167c7c0f5e8ca28ac13c5fbbff127a0db3f3 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/25/44/f674a77d6b8d51454f84525565032118968dc8b988f8e914232e918bc892/cobs_index-0.1.1-cp27-cp27mu-manylinux2010_x86_64.whl#sha256=342e31e8fe26c57182ee213ae0a72af376177b07f673c9d04d884977d66576bb (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/b5/ff/2a253105a5a8a573ef7ba1634094a344d63c9b86194d3298673da7bbf7b0/cobs_index-0.1.1-cp34-cp34m-manylinux2010_x86_64.whl#sha256=295093b744633d3d1247437ccfc7186f7e51a502ceecedaca25e95d54d35e8c1 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/16/87/8811c72c69dc71b2f97a1e6a0f3dc932fa33977a9b9b221e557df40e8fb8/cobs_index-0.1.1-cp35-cp35m-manylinux2010_x86_64.whl#sha256=d505d4fe91ffbadb5920718342e6ce96b04daa7e805acd893f168ca643220dbf (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/d6/fb/2a9a9d070e7fd83f7f1a1982865f5c34b084064984b0d4375893ffd2e395/cobs_index-0.1.1-cp36-cp36m-manylinux2010_x86_64.whl#sha256=e0a0eeca4ad2200a53b374de3cafffd42ff8a90eabded913493a45ed6ecb1d02 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/5a/4c/d00fd7cc416125e8aa39d257e1c9bfdc4a2cf5aebb6922ea806e6f737a57/cobs_index-0.1.1-cp37-cp37m-manylinux2010_x86_64.whl#sha256=1d5ae14504d4c4d42cab6ab6e6814561957cf8c93bf85a56baf00bfe3563e4ec (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Skipping link https://files.pythonhosted.org/packages/2d/44/794fb92a20b5187aa7990960c8c5b4cff258b5547c2a06df2b2b10ded8a9/cobs_index-0.1.1-cp38-cp38-manylinux2010_x86_64.whl#sha256=c3f512d0f19af225e9d1cb1c4d6aa4ec9128a8dcd95f44c28e733cd98524ff76 (from https://pypi.org/simple/cobs-index/); it is not compatible with this Python 2019-11-06T10:37:10 Found link https://files.pythonhosted.org/packages/9c/a5/004fe5e4053910b96ffda3ceac3c89c836d50bcbaa2ac2340c10694ed542/cobs_index-0.1.1.tar.gz#sha256=d25b65b2d484a24e7b447e52f2ac8d8425d0a0f67e3d9ae6bf7b9eed2be670fe (from https://pypi.org/simple/cobs-index/), version: 0.1.1 2019-11-06T10:37:10 Using version 0.1.1 (newest of versions: 0.1.1) 2019-11-06T10:37:10 Created temporary directory: /tmp/pip-unpack-52n48xgi 2019-11-06T10:37:10 Downloading https://files.pythonhosted.org/packages/9c/a5/004fe5e4053910b96ffda3ceac3c89c836d50bcbaa2ac2340c10694ed542/cobs_index-0.1.1.tar.gz (2.7MB) 2019-11-06T10:37:10 Downloading from URL https://files.pythonhosted.org/packages/9c/a5/004fe5e4053910b96ffda3ceac3c89c836d50bcbaa2ac2340c10694ed542/cobs_index-0.1.1.tar.gz#sha256=d25b65b2d484a24e7b447e52f2ac8d8425d0a0f67e3d9ae6bf7b9eed2be670fe (from https://pypi.org/simple/cobs-index/) 2019-11-06T10:37:15 Added cobs-index==0.1.1 from https://files.pythonhosted.org/packages/9c/a5/004fe5e4053910b96ffda3ceac3c89c836d50bcbaa2ac2340c10694ed542/cobs_index-0.1.1.tar.gz#sha256=d25b65b2d484a24e7b447e52f2ac8d8425d0a0f67e3d9ae6bf7b9eed2be670fe to build tracker '/tmp/pip-req-tracker-c65vyios' 2019-11-06T10:37:15 Running setup.py (path:/tmp/pip-wheel-92k3f0lr/cobs-index/setup.py) egg_info for package cobs-index 2019-11-06T10:37:15 Running command python setup.py egg_info 2019-11-06T10:37:17 running egg_info 2019-11-06T10:37:17 creating pip-egg-info/cobs_index.egg-info 2019-11-06T10:37:17 writing pip-egg-info/cobs_index.egg-info/PKG-INFO 2019-11-06T10:37:17 writing dependency_links to pip-egg-info/cobs_index.egg-info/dependency_links.txt 2019-11-06T10:37:17 writing top-level names to pip-egg-info/cobs_index.egg-info/top_level.txt 2019-11-06T10:37:17 writing manifest file 'pip-egg-info/cobs_index.egg-info/SOURCES.txt' 2019-11-06T10:37:17 reading manifest file 'pip-egg-info/cobs_index.egg-info/SOURCES.txt' 2019-11-06T10:37:17 reading manifest template 'MANIFEST.in' 2019-11-06T10:37:18 warning: no previously-included files matching '.git' found under directory 'extlib' 2019-11-06T10:37:18 warning: no previously-included files matching '.git' found under directory 'python/pybind11' 2019-11-06T10:37:18 writing manifest file 'pip-egg-info/cobs_index.egg-info/SOURCES.txt' 2019-11-06T10:37:18 Source in /tmp/pip-wheel-92k3f0lr/cobs-index has version 0.1.1, which satisfies requirement cobs-index==0.1.1 from https://files.pythonhosted.org/packages/9c/a5/004fe5e4053910b96ffda3ceac3c89c836d50bcbaa2ac2340c10694ed542/cobs_index-0.1.1.tar.gz#sha256=d25b65b2d484a24e7b447e52f2ac8d8425d0a0f67e3d9ae6bf7b9eed2be670fe 2019-11-06T10:37:18 Removed cobs-index==0.1.1 from https://files.pythonhosted.org/packages/9c/a5/004fe5e4053910b96ffda3ceac3c89c836d50bcbaa2ac2340c10694ed542/cobs_index-0.1.1.tar.gz#sha256=d25b65b2d484a24e7b447e52f2ac8d8425d0a0f67e3d9ae6bf7b9eed2be670fe from build tracker '/tmp/pip-req-tracker-c65vyios' 2019-11-06T10:37:18 Building wheels for collected packages: cobs-index 2019-11-06T10:37:18 Created temporary directory: /tmp/pip-wheel-0bdyxv8t 2019-11-06T10:37:18 Building wheel for cobs-index (setup.py): started 2019-11-06T10:37:18 Destination directory: /tmp/pip-wheel-0bdyxv8t 2019-11-06T10:37:18 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-92k3f0lr/cobs-index/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0bdyxv8t 2019-11-06T10:37:20 running bdist_wheel 2019-11-06T10:37:20 running build 2019-11-06T10:37:20 running build_ext 2019-11-06T10:37:22 -- The C compiler identification is GNU 8.3.0 2019-11-06T10:37:23 -- The CXX compiler identification is GNU 8.3.0 2019-11-06T10:37:23 -- Check for working C compiler: /usr/bin/cc 2019-11-06T10:37:24 -- Check for working C compiler: /usr/bin/cc -- works 2019-11-06T10:37:24 -- Detecting C compiler ABI info 2019-11-06T10:37:24 -- Detecting C compiler ABI info - done 2019-11-06T10:37:24 -- Detecting C compile features 2019-11-06T10:37:26 -- Detecting C compile features - done 2019-11-06T10:37:26 -- Check for working CXX compiler: /usr/bin/c++ 2019-11-06T10:37:27 -- Check for working CXX compiler: /usr/bin/c++ -- works 2019-11-06T10:37:27 -- Detecting CXX compiler ABI info 2019-11-06T10:37:28 -- Detecting CXX compiler ABI info - done 2019-11-06T10:37:28 -- Detecting CXX compile features 2019-11-06T10:37:33 -- Detecting CXX compile features - done 2019-11-06T10:37:33 -- COBS CMAKE_CXX_FLAGS:-DVERSION_INFO=\"0.1.1\" -fopenmp -Wpedantic -W -Wall -march=native -fPIC 2019-11-06T10:37:33 -- Looking for pthread.h 2019-11-06T10:37:34 -- Looking for pthread.h - found 2019-11-06T10:37:34 -- Looking for pthread_create 2019-11-06T10:37:35 -- Looking for pthread_create - found 2019-11-06T10:37:35 -- Found Threads: TRUE 2019-11-06T10:37:35 -- Found PythonInterp: /usr/bin/python3 (found version "3.7.3") 2019-11-06T10:37:35 -- Performing Test CFLAG_Wall 2019-11-06T10:37:35 -- Performing Test CFLAG_Wall - Success 2019-11-06T10:37:36 -- Performing Test CFLAG_Wextra 2019-11-06T10:37:36 -- Performing Test CFLAG_Wextra - Success 2019-11-06T10:37:36 -- Performing Test CFLAG_Wcast_qual 2019-11-06T10:37:37 -- Performing Test CFLAG_Wcast_qual - Success 2019-11-06T10:37:37 -- Performing Test CFLAG_Wcast_align 2019-11-06T10:37:37 -- Performing Test CFLAG_Wcast_align - Success 2019-11-06T10:37:37 -- Performing Test CFLAG_Wshadow 2019-11-06T10:37:38 -- Performing Test CFLAG_Wshadow - Success 2019-11-06T10:37:38 -- Performing Test CFLAG_Wstrict_aliasing_1 2019-11-06T10:37:39 -- Performing Test CFLAG_Wstrict_aliasing_1 - Success 2019-11-06T10:37:39 -- Performing Test CFLAG_Wswitch_enum 2019-11-06T10:37:39 -- Performing Test CFLAG_Wswitch_enum - Success 2019-11-06T10:37:39 -- Performing Test CFLAG_Wdeclaration_after_statement 2019-11-06T10:37:40 -- Performing Test CFLAG_Wdeclaration_after_statement - Success 2019-11-06T10:37:40 -- Performing Test CFLAG_Wstrict_prototypes 2019-11-06T10:37:41 -- Performing Test CFLAG_Wstrict_prototypes - Success 2019-11-06T10:37:41 -- Performing Test CFLAG_Wundef 2019-11-06T10:37:41 -- Performing Test CFLAG_Wundef - Success 2019-11-06T10:37:42 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") 2019-11-06T10:37:43 -- Could NOT find Boost 2019-11-06T10:37:43 -- Performing Test TLX_CXX_HAS_CXX17 2019-11-06T10:37:44 -- Performing Test TLX_CXX_HAS_CXX17 - Success 2019-11-06T10:37:44 -- TLX CMAKE_CXX_FLAGS: -Wshadow -Wold-style-cast -std=c++17 -g -W -Wall -Wextra -fPIC -DVERSION_INFO=\"0.1.1\" -fopenmp -Wpedantic -W -Wall -march=native -fPIC -Wcast-qual -Winit-self -Wnoexcept -Woverloaded-virtual -Wredundant-decls 2019-11-06T10:37:45 -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.7m.so 2019-11-06T10:37:45 -- pybind11 v2.4.3 2019-11-06T10:37:45 -- Performing Test HAS_FLTO 2019-11-06T10:37:50 -- Performing Test HAS_FLTO - Success 2019-11-06T10:37:50 -- LTO enabled 2019-11-06T10:37:50 -- Configuring done 2019-11-06T10:37:51 -- Generating done 2019-11-06T10:37:51 -- Build files have been written to: /tmp/pip-wheel-92k3f0lr/cobs-index/build/temp.linux-armv7l-3.7 2019-11-06T10:37:52 Scanning dependencies of target xxhash 2019-11-06T10:37:52 [ 1%] Building C object extlib/xxhash/cmake_unofficial/CMakeFiles/xxhash.dir/__/xxhash.c.o 2019-11-06T10:37:52 Scanning dependencies of target tlx 2019-11-06T10:37:52 [ 2%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/algorithm/parallel_multiway_merge.cpp.o 2019-11-06T10:37:55 [ 4%] Linking C static library libxxhash.a 2019-11-06T10:37:55 [ 5%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/backtrace.cpp.o 2019-11-06T10:37:55 [ 5%] Built target xxhash 2019-11-06T10:37:56 [ 6%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/cmdline_parser.cpp.o 2019-11-06T10:37:56 [ 8%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/die/core.cpp.o 2019-11-06T10:38:00 [ 9%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/md5.cpp.o 2019-11-06T10:38:03 [ 10%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/sha1.cpp.o 2019-11-06T10:38:06 [ 12%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/sha256.cpp.o 2019-11-06T10:38:08 [ 13%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/digest/sha512.cpp.o 2019-11-06T10:38:12 [ 14%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/logger/core.cpp.o 2019-11-06T10:38:14 [ 16%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/multi_timer.cpp.o 2019-11-06T10:38:17 [ 17%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/port/setenv.cpp.o 2019-11-06T10:38:17 [ 18%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/appendline.cpp.o 2019-11-06T10:38:18 In file included from /usr/include/c++/8/vector:69, 2019-11-06T10:38:18 from /tmp/pip-wheel-92k3f0lr/cobs-index/extlib/tlx/tlx/multi_timer.hpp:16, 2019-11-06T10:38:18 from /tmp/pip-wheel-92k3f0lr/cobs-index/extlib/tlx/tlx/multi_timer.cpp:11: 2019-11-06T10:38:18 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {tlx::MultiTimer::Entry&}; _Tp = tlx::MultiTimer::Entry; _Alloc = std::allocator]’: 2019-11-06T10:38:18 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2019-11-06T10:38:18 vector<_Tp, _Alloc>:: 2019-11-06T10:38:18 ^~~~~~~~~~~~~~~~~~~ 2019-11-06T10:38:18 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 2019-11-06T10:38:18 /usr/include/c++/8/bits/vector.tcc: In member function ‘tlx::MultiTimer::Entry& tlx::MultiTimer::find_or_create(const char*)’: 2019-11-06T10:38:18 /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2019-11-06T10:38:18 _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2019-11-06T10:38:18 ^~~~~~~~~~~~~~~~~ 2019-11-06T10:38:19 [ 20%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/base64.cpp.o 2019-11-06T10:38:19 [ 21%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/bitdump.cpp.o 2019-11-06T10:38:21 [ 22%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/compare_icase.cpp.o 2019-11-06T10:38:21 [ 24%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/contains.cpp.o 2019-11-06T10:38:23 [ 25%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/contains_word.cpp.o 2019-11-06T10:38:23 [ 26%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/ends_with.cpp.o 2019-11-06T10:38:25 [ 28%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/equal_icase.cpp.o 2019-11-06T10:38:25 [ 29%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/erase_all.cpp.o 2019-11-06T10:38:27 [ 30%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/escape_html.cpp.o 2019-11-06T10:38:28 [ 32%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/escape_uri.cpp.o 2019-11-06T10:38:29 [ 33%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/expand_environment_variables.cpp.o 2019-11-06T10:38:30 [ 34%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/extract_between.cpp.o 2019-11-06T10:38:32 [ 36%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/format_si_iec_units.cpp.o 2019-11-06T10:38:32 [ 37%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/hexdump.cpp.o 2019-11-06T10:38:35 [ 38%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/index_of.cpp.o 2019-11-06T10:38:36 [ 40%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/join.cpp.o 2019-11-06T10:38:38 [ 41%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/join_quoted.cpp.o 2019-11-06T10:38:40 [ 42%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/less_icase.cpp.o 2019-11-06T10:38:40 [ 44%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/pad.cpp.o 2019-11-06T10:38:42 [ 45%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/parse_si_iec_units.cpp.o 2019-11-06T10:38:42 [ 46%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/replace.cpp.o 2019-11-06T10:38:44 [ 48%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/split.cpp.o 2019-11-06T10:38:46 [ 49%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/split_quoted.cpp.o 2019-11-06T10:38:48 [ 50%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/split_words.cpp.o 2019-11-06T10:38:50 [ 52%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/ssprintf.cpp.o 2019-11-06T10:38:51 [ 53%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/starts_with.cpp.o 2019-11-06T10:38:52 [ 54%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/to_lower.cpp.o 2019-11-06T10:38:53 [ 56%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/to_upper.cpp.o 2019-11-06T10:38:54 [ 57%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/trim.cpp.o 2019-11-06T10:38:55 [ 58%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/union_words.cpp.o 2019-11-06T10:38:57 [ 60%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/string/word_wrap.cpp.o 2019-11-06T10:38:57 [ 61%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/thread_pool.cpp.o 2019-11-06T10:38:59 [ 62%] Building CXX object extlib/tlx/tlx/CMakeFiles/tlx.dir/timestamp.cpp.o 2019-11-06T10:39:03 [ 64%] Linking CXX static library libtlx.a 2019-11-06T10:39:07 [ 64%] Built target tlx 2019-11-06T10:39:07 Scanning dependencies of target cobs_static 2019-11-06T10:39:07 [ 66%] Building CXX object cobs/CMakeFiles/cobs_static.dir/construction/compact_index.cpp.o 2019-11-06T10:39:07 [ 66%] Building CXX object cobs/CMakeFiles/cobs_static.dir/construction/classic_index.cpp.o 2019-11-06T10:39:13 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp: In function ‘void cobs::compact_combine_into_compact(const std::experimental::filesystem::v1::__cxx11::path&, const std::experimental::filesystem::v1::__cxx11::path&, uint64_t, uint64_t, bool)’: 2019-11-06T10:39:13 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:118:64: error: no matching function for call to ‘min(size_t&, long long unsigned int)’ 2019-11-06T10:39:13 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T10:39:13 ^ 2019-11-06T10:39:13 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:13 from /usr/include/c++/8/string:40, 2019-11-06T10:39:13 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T10:39:13 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:13 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:13 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:118:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T10:39:14 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/string:40, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:118:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T10:39:14 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:118:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:118:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 batch_size, tlx::div_ceil(data_size, page_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:127:78: error: no matching function for call to ‘min(size_t&, uint64_t)’ 2019-11-06T10:39:14 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/string:40, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:127:78: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T10:39:14 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/string:40, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:127:78: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T10:39:14 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:127:78: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:9: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/compact_index.cpp:127:78: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 size_t this_batch = std::min(batch_size, data_size / row_size); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp: In function ‘void cobs::classic_construct_from_documents(const cobs::DocumentList&, const std::experimental::filesystem::v1::__cxx11::path&, const cobs::ClassicIndexParameters&)’: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:136:60: error: no matching function for call to ‘max(long unsigned int, unsigned int)’ 2019-11-06T10:39:14 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/ios:40, 2019-11-06T10:39:14 from /usr/include/c++/8/istream:38, 2019-11-06T10:39:14 from /usr/include/c++/8/fstream:38, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:219:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&)’ 2019-11-06T10:39:14 max(const _Tp& __a, const _Tp& __b) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:219:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:136:60: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 2019-11-06T10:39:14 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/ios:40, 2019-11-06T10:39:14 from /usr/include/c++/8/istream:38, 2019-11-06T10:39:14 from /usr/include/c++/8/fstream:38, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:265:5: note: candidate: ‘template constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T10:39:14 max(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:265:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:136:60: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 2019-11-06T10:39:14 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3462:5: note: candidate: ‘template constexpr _Tp std::max(std::initializer_list<_Tp>)’ 2019-11-06T10:39:14 max(initializer_list<_Tp> __l) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3462:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:136:60: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 2019-11-06T10:39:14 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3468:5: note: candidate: ‘template constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T10:39:14 max(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3468:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:136:60: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 2019-11-06T10:39:14 batch_size = std::max(8lu, tlx::round_up(batch_size, 8)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:139:68: error: no matching function for call to ‘min(size_t&, long long unsigned int)’ 2019-11-06T10:39:14 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/ios:40, 2019-11-06T10:39:14 from /usr/include/c++/8/istream:38, 2019-11-06T10:39:14 from /usr/include/c++/8/fstream:38, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:139:68: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T10:39:14 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/ios:40, 2019-11-06T10:39:14 from /usr/include/c++/8/istream:38, 2019-11-06T10:39:14 from /usr/include/c++/8/fstream:38, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:139:68: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘long long unsigned int’) 2019-11-06T10:39:14 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:139:68: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:139:68: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 params.mem_bytes / (batch_size / 8 * params.signature_size)); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp: In function ‘void cobs::classic_combine_streams(std::vector >&, std::vector&, const std::experimental::filesystem::v1::__cxx11::path&, unsigned int, uint8_t, uint64_t, uint64_t, uint64_t, uint64_t, cobs::Timer&, const std::vector >&)’: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:249:62: error: no matching function for call to ‘min(size_t&, uint64_t)’ 2019-11-06T10:39:14 std::min(batch_size, signature_size - current_row); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/ios:40, 2019-11-06T10:39:14 from /usr/include/c++/8/istream:38, 2019-11-06T10:39:14 from /usr/include/c++/8/fstream:38, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:195:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:249:62: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T10:39:14 std::min(batch_size, signature_size - current_row); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/bits/char_traits.h:39, 2019-11-06T10:39:14 from /usr/include/c++/8/ios:40, 2019-11-06T10:39:14 from /usr/include/c++/8/istream:38, 2019-11-06T10:39:14 from /usr/include/c++/8/fstream:38, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:10: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 2019-11-06T10:39:14 min(const _Tp& __a, const _Tp& __b, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algobase.h:243:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:249:62: note: deduced conflicting types for parameter ‘const _Tp’ (‘unsigned int’ and ‘uint64_t’ {aka ‘long long unsigned int’}) 2019-11-06T10:39:14 std::min(batch_size, signature_size - current_row); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3450:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:249:62: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 std::min(batch_size, signature_size - current_row); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:14 In file included from /usr/include/c++/8/algorithm:62, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/kmer_buffer.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/cortex_file.hpp:16, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/document_list.hpp:12, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.hpp:13, 2019-11-06T10:39:14 from /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:14: 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: candidate: ‘template constexpr _Tp std::min(std::initializer_list<_Tp>, _Compare)’ 2019-11-06T10:39:14 min(initializer_list<_Tp> __l, _Compare __comp) 2019-11-06T10:39:14 ^~~ 2019-11-06T10:39:14 /usr/include/c++/8/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed: 2019-11-06T10:39:14 /tmp/pip-wheel-92k3f0lr/cobs-index/cobs/construction/classic_index.cpp:249:62: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘unsigned int’ 2019-11-06T10:39:14 std::min(batch_size, signature_size - current_row); 2019-11-06T10:39:14 ^ 2019-11-06T10:39:16 make[3]: *** [cobs/CMakeFiles/cobs_static.dir/build.make:76: cobs/CMakeFiles/cobs_static.dir/construction/compact_index.cpp.o] Error 1 2019-11-06T10:39:16 make[3]: *** Waiting for unfinished jobs.... 2019-11-06T10:39:17 make[3]: *** [cobs/CMakeFiles/cobs_static.dir/build.make:63: cobs/CMakeFiles/cobs_static.dir/construction/classic_index.cpp.o] Error 1 2019-11-06T10:39:17 make[2]: *** [CMakeFiles/Makefile2:468: cobs/CMakeFiles/cobs_static.dir/all] Error 2 2019-11-06T10:39:17 make[1]: *** [CMakeFiles/Makefile2:537: src/CMakeFiles/cobs.dir/rule] Error 2 2019-11-06T10:39:17 make: *** [Makefile:279: cobs] Error 2 2019-11-06T10:39:17 Traceback (most recent call last): 2019-11-06T10:39:17 File "", line 1, in 2019-11-06T10:39:17 File "/tmp/pip-wheel-92k3f0lr/cobs-index/setup.py", line 97, in 2019-11-06T10:39:17 "Topic :: Text Processing :: Indexing" 2019-11-06T10:39:17 File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 145, in setup 2019-11-06T10:39:17 return distutils.core.setup(**attrs) 2019-11-06T10:39:17 File "/usr/lib/python3.7/distutils/core.py", line 148, in setup 2019-11-06T10:39:17 dist.run_commands() 2019-11-06T10:39:17 File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands 2019-11-06T10:39:17 self.run_command(cmd) 2019-11-06T10:39:17 File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command 2019-11-06T10:39:17 cmd_obj.run() 2019-11-06T10:39:17 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run 2019-11-06T10:39:18 self.run_command('build') 2019-11-06T10:39:18 File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command 2019-11-06T10:39:18 self.distribution.run_command(command) 2019-11-06T10:39:18 File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command 2019-11-06T10:39:18 cmd_obj.run() 2019-11-06T10:39:18 File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run 2019-11-06T10:39:18 self.run_command(cmd_name) 2019-11-06T10:39:18 File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command 2019-11-06T10:39:18 self.distribution.run_command(command) 2019-11-06T10:39:18 File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command 2019-11-06T10:39:18 cmd_obj.run() 2019-11-06T10:39:18 File "/tmp/pip-wheel-92k3f0lr/cobs-index/setup.py", line 31, in run 2019-11-06T10:39:18 self.build_extension(ext) 2019-11-06T10:39:18 File "/tmp/pip-wheel-92k3f0lr/cobs-index/setup.py", line 62, in build_extension 2019-11-06T10:39:18 cwd=self.build_temp) 2019-11-06T10:39:18 File "/usr/lib/python3.7/subprocess.py", line 347, in check_call 2019-11-06T10:39:18 raise CalledProcessError(retcode, cmd) 2019-11-06T10:39:18 subprocess.CalledProcessError: Command '['cmake', '--build', '.', '--target', 'cobs', '--config', 'Release', '--', '-j2']' returned non-zero exit status 2. 2019-11-06T10:39:18 Building wheel for cobs-index (setup.py): finished with status 'error' 2019-11-06T10:39:18 ERROR: Failed building wheel for cobs-index 2019-11-06T10:39:18 Running setup.py clean for cobs-index 2019-11-06T10:39:18 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-92k3f0lr/cobs-index/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2019-11-06T10:39:20 running clean 2019-11-06T10:39:20 removing 'build/temp.linux-armv7l-3.7' (and everything under it) 2019-11-06T10:39:20 removing 'build/lib.linux-armv7l-3.7' (and everything under it) 2019-11-06T10:39:20 'build/bdist.linux-armv7l' does not exist -- can't clean it 2019-11-06T10:39:20 'build/scripts-3.7' does not exist -- can't clean it 2019-11-06T10:39:20 removing 'build' 2019-11-06T10:39:20 Failed to build cobs-index 2019-11-06T10:39:20 Cleaning up... 2019-11-06T10:39:20 Removing source in /tmp/pip-wheel-92k3f0lr/cobs-index 2019-11-06T10:39:21 Removed build tracker '/tmp/pip-req-tracker-c65vyios' 2019-11-06T10:39:21 ERROR: Failed to build one or more wheels 2019-11-06T10:39:21 Exception information: 2019-11-06T10:39:21 Traceback (most recent call last): 2019-11-06T10:39:21 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main 2019-11-06T10:39:21 status = self.run(options, args) 2019-11-06T10:39:21 File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run 2019-11-06T10:39:21 "Failed to build one or more wheels" 2019-11-06T10:39:21 pip._internal.exceptions.CommandError: Failed to build one or more wheels