Created temporary directory: /tmp/pip-ephem-wheel-cache-po6_3tsw Created temporary directory: /tmp/pip-req-tracker-trz5vjq3 Created requirements tracker '/tmp/pip-req-tracker-trz5vjq3' Created temporary directory: /tmp/pip-wheel-_5h7lmfv Collecting bap-atac==0.6.5 1 location(s) to search for versions of bap-atac: * https://pypi.org/simple/bap-atac/ Getting page https://pypi.org/simple/bap-atac/ Analyzing links from page https://pypi.org/simple/bap-atac/ Found link https://files.pythonhosted.org/packages/cc/72/bf1b7fe04c92268ff8c9632080d4681d771b6fb0be8b022c4314ce56c000/bap-atac-0.6.4a0.tar.gz#sha256=a29f67fdabe023875a0b5fe201d4b8e32b0184c58af8fa86d3462bd0081eba89 (from https://pypi.org/simple/bap-atac/), version: 0.6.4a0 Found link https://files.pythonhosted.org/packages/29/91/10b40c9ba7f6de1d5087b7afc4a64ff173721300d5d91773c555a1731770/bap-atac-0.6.4.tar.gz#sha256=408dbe9a9e74888a144ed6f8b97f9c00767e4d0c9ab2b9a06cdb5481b3b31b22 (from https://pypi.org/simple/bap-atac/), version: 0.6.4 Found link https://files.pythonhosted.org/packages/70/3c/2b225a1b6ebbd4c84c586bac33aa2536a4a8c17c35c5975ee7ea98297c88/bap-atac-0.6.5.tar.gz#sha256=46aded4f19f8aa0373f56cce9decce2c4d3e6c0fa10bf7b112495a1d38edd16e (from https://pypi.org/simple/bap-atac/), version: 0.6.5 Using version 0.6.5 (newest of versions: 0.6.5) Created temporary directory: /tmp/pip-unpack-02i_xoam Downloading https://files.pythonhosted.org/packages/70/3c/2b225a1b6ebbd4c84c586bac33aa2536a4a8c17c35c5975ee7ea98297c88/bap-atac-0.6.5.tar.gz (3.1MB) Downloading from URL https://files.pythonhosted.org/packages/70/3c/2b225a1b6ebbd4c84c586bac33aa2536a4a8c17c35c5975ee7ea98297c88/bap-atac-0.6.5.tar.gz#sha256=46aded4f19f8aa0373f56cce9decce2c4d3e6c0fa10bf7b112495a1d38edd16e (from https://pypi.org/simple/bap-atac/) Added bap-atac==0.6.5 from https://files.pythonhosted.org/packages/70/3c/2b225a1b6ebbd4c84c586bac33aa2536a4a8c17c35c5975ee7ea98297c88/bap-atac-0.6.5.tar.gz#sha256=46aded4f19f8aa0373f56cce9decce2c4d3e6c0fa10bf7b112495a1d38edd16e to build tracker '/tmp/pip-req-tracker-trz5vjq3' Running setup.py (path:/tmp/pip-wheel-_5h7lmfv/bap-atac/setup.py) egg_info for package bap-atac Running command python setup.py egg_info running egg_info creating pip-egg-info/bap_atac.egg-info writing pip-egg-info/bap_atac.egg-info/PKG-INFO writing entry points to pip-egg-info/bap_atac.egg-info/entry_points.txt writing top-level names to pip-egg-info/bap_atac.egg-info/top_level.txt writing dependency_links to pip-egg-info/bap_atac.egg-info/dependency_links.txt writing requirements to pip-egg-info/bap_atac.egg-info/requires.txt writing manifest file 'pip-egg-info/bap_atac.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/bap_atac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'bap.egg-info/' no previously-included directories found matching 'tests/' no previously-included directories found matching '*.DS_Store' warning: no files found matching 'LICENSE.txt' writing manifest file 'pip-egg-info/bap_atac.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-_5h7lmfv/bap-atac has version 0.6.5, which satisfies requirement bap-atac==0.6.5 from https://files.pythonhosted.org/packages/70/3c/2b225a1b6ebbd4c84c586bac33aa2536a4a8c17c35c5975ee7ea98297c88/bap-atac-0.6.5.tar.gz#sha256=46aded4f19f8aa0373f56cce9decce2c4d3e6c0fa10bf7b112495a1d38edd16e Removed bap-atac==0.6.5 from https://files.pythonhosted.org/packages/70/3c/2b225a1b6ebbd4c84c586bac33aa2536a4a8c17c35c5975ee7ea98297c88/bap-atac-0.6.5.tar.gz#sha256=46aded4f19f8aa0373f56cce9decce2c4d3e6c0fa10bf7b112495a1d38edd16e from build tracker '/tmp/pip-req-tracker-trz5vjq3' Building wheels for collected packages: bap-atac Created temporary directory: /tmp/pip-wheel-xmhjx92t Running setup.py bdist_wheel for bap-atac: started Destination directory: /tmp/pip-wheel-xmhjx92t Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-_5h7lmfv/bap-atac/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-xmhjx92t running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/bap copying bap/bapHelp.py -> build/lib/bap copying bap/cli_bap2.py -> build/lib/bap copying bap/cli_bap_frag.py -> build/lib/bap copying bap/bap2ProjectClass.py -> build/lib/bap copying bap/cli_reanno.py -> build/lib/bap copying bap/cli_bap_bulk_frag.py -> build/lib/bap copying bap/__init__.py -> build/lib/bap copying bap/cli_old_dontEdit.py -> build/lib/bap copying bap/bapFragProjectClass.py -> build/lib/bap copying bap/bap1ProjectClass.py -> build/lib/bap running egg_info writing bap_atac.egg-info/PKG-INFO writing top-level names to bap_atac.egg-info/top_level.txt writing dependency_links to bap_atac.egg-info/dependency_links.txt writing entry points to bap_atac.egg-info/entry_points.txt writing requirements to bap_atac.egg-info/requires.txt reading manifest file 'bap_atac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'bap.egg-info/' no previously-included directories found matching 'tests/' no previously-included directories found matching '*.DS_Store' warning: no files found matching 'LICENSE.txt' writing manifest file 'bap_atac.egg-info/SOURCES.txt' copying bap/.DS_Store -> build/lib/bap copying bap/__init__.pyc -> build/lib/bap copying bap/cli.pyc -> build/lib/bap creating build/lib/bap/__pycache__ copying bap/__pycache__/.DS_Store -> build/lib/bap/__pycache__ copying bap/__pycache__/__init__.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/annoall.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/bap1ProjectClass.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/bap2ProjectClass.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/bapFragProjectClass.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/bapHelp.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/bapProjectClass.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/cli.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/cli_bap2.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/cli_bap_bulk_frag.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/cli_bap_frag.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/cli_old_dontEdit.cpython-36.pyc -> build/lib/bap/__pycache__ copying bap/__pycache__/cli_reanno.cpython-36.pyc -> build/lib/bap/__pycache__ creating build/lib/bap/anno copying bap/anno/.DS_Store -> build/lib/bap/anno creating build/lib/bap/anno/TSS copying bap/anno/TSS/.DS_Store -> build/lib/bap/anno/TSS copying bap/anno/TSS/GRCh37.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/GRCh38.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/GRCm37.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/GRCm38.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/hg19-mm10.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/hg19-mm10_nochr.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/hg19.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/hg19_mm10_c.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/hg38.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/mm10.refGene.TSS.bed -> build/lib/bap/anno/TSS copying bap/anno/TSS/mm9.refGene.TSS.bed -> build/lib/bap/anno/TSS creating build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_GRCh37.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_GRCh38.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_GRCm37.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_GRCm38.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_hg19-mm10.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_hg19-mm10_nochr.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_hg19.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_hg19_mm10_c.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_hg38.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_mm10.sizes -> build/lib/bap/anno/bedtools copying bap/anno/bedtools/chrom_mm9.sizes -> build/lib/bap/anno/bedtools creating build/lib/bap/anno/blacklist copying bap/anno/blacklist/GRCh37.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/GRCh38.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/GRCm37.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/GRCm38.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/hg19-mm10.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/hg19-mm10_nochr.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/hg19.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/hg19_mm10_c.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/hg38.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/mm10.full.blacklist.bed -> build/lib/bap/anno/blacklist copying bap/anno/blacklist/mm9.full.blacklist.bed -> build/lib/bap/anno/blacklist creating build/lib/bap/barcode copying bap/barcode/.DS_Store -> build/lib/bap/barcode copying bap/barcode/cli_barcode.py -> build/lib/bap/barcode creating build/lib/bap/barcode/__pycache__ copying bap/barcode/__pycache__/cli_barcode.cpython-36.pyc -> build/lib/bap/barcode/__pycache__ creating build/lib/bap/barcode/modes copying bap/barcode/modes/.DS_Store -> build/lib/bap/barcode/modes copying bap/barcode/modes/barcodeHelp.py -> build/lib/bap/barcode/modes copying bap/barcode/modes/biorad_v1.py -> build/lib/bap/barcode/modes copying bap/barcode/modes/biorad_v2-multi.py -> build/lib/bap/barcode/modes copying bap/barcode/modes/biorad_v2.py -> build/lib/bap/barcode/modes creating build/lib/bap/barcode/modes/__pycache__ copying bap/barcode/modes/__pycache__/barcodeHelp.cpython-36.pyc -> build/lib/bap/barcode/modes/__pycache__ creating build/lib/bap/bin copying bap/bin/.DS_Store -> build/lib/bap/bin creating build/lib/bap/bin/R copying bap/bin/R/.DS_Store -> build/lib/bap/bin/R copying bap/bin/R/00_knee_CL.R -> build/lib/bap/bin/R copying bap/bin/R/10b_knee_execute.R -> build/lib/bap/bin/R copying bap/bin/R/11a_computeNCperRead.R -> build/lib/bap/bin/R copying bap/bin/R/12_fragOverlapMetricsChr.R -> build/lib/bap/bin/R copying bap/bin/R/13_callDoublets.R -> build/lib/bap/bin/R copying bap/bin/R/15_ncReadCleanup.R -> build/lib/bap/bin/R copying bap/bin/R/16_qualityControlReport_SE.R -> build/lib/bap/bin/R copying bap/bin/R/19_makeKneePlots.R -> build/lib/bap/bin/R copying bap/bin/R/21_annotate_fragments.R -> build/lib/bap/bin/R copying bap/bin/R/21a_annotate_fragments_bap2_frags.R -> build/lib/bap/bin/R copying bap/bin/R/21b_processRawFragments_bap_frag_bulk.R -> build/lib/bap/bin/R copying bap/bin/R/22_fragOverlapMetricsChr_bap2.R -> build/lib/bap/bin/R copying bap/bin/R/23_callDoublets_bap2.R -> build/lib/bap/bin/R copying bap/bin/R/24_reannoFrags_bap2.R -> build/lib/bap/bin/R copying bap/bin/R/26a_QCsimple_bap2.R -> build/lib/bap/bin/R copying bap/bin/R/26b_QCadvanced_SE_bap2.R -> build/lib/bap/bin/R copying bap/bin/R/zzz_fragOverlapMetricsBinChr_bap2.R -> build/lib/bap/bin/R creating build/lib/bap/bin/python copying bap/bin/python/.DS_Store -> build/lib/bap/bin/python copying bap/bin/python/10_quantBarcode_Filt.py -> build/lib/bap/bin/python copying bap/bin/python/11b_annoFiltNC.py -> build/lib/bap/bin/python copying bap/bin/python/14_paintDropBarcode.py -> build/lib/bap/bin/python copying bap/bin/python/17_processMito.py -> build/lib/bap/bin/python copying bap/bin/python/20_names_split_filt.py -> build/lib/bap/bin/python copying bap/bin/python/20a_nonames_split_filt.py -> build/lib/bap/bin/python copying bap/bin/python/25_paintDropBarcode_bap2.py -> build/lib/bap/bin/python creating build/lib/bap/bin/snake copying bap/bin/snake/.DS_Store -> build/lib/bap/bin/snake copying bap/bin/snake/Snakefile.bap.chr -> build/lib/bap/bin/snake copying bap/bin/snake/Snakefile.bap2.chr -> build/lib/bap/bin/snake copying bap/bin/snake/Snakefile.bap_bulk_frags -> build/lib/bap/bin/snake copying bap/bin/snake/Snakefile.bap_frags -> build/lib/bap/bin/snake installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/bapHelp.py -> build/bdist.linux-armv7l/wheel/bap creating build/bdist.linux-armv7l/wheel/bap/anno creating build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/hg19-mm10.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/hg19.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/GRCm38.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/GRCh38.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/mm9.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/GRCh37.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/hg38.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/hg19_mm10_c.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/hg19-mm10_nochr.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/GRCm37.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist copying build/lib/bap/anno/blacklist/mm10.full.blacklist.bed -> build/bdist.linux-armv7l/wheel/bap/anno/blacklist creating build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_hg19-mm10_nochr.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_hg19_mm10_c.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_hg38.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_GRCm37.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_GRCm38.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_mm10.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_hg19-mm10.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_hg19.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_mm9.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_GRCh37.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/bedtools/chrom_GRCh38.sizes -> build/bdist.linux-armv7l/wheel/bap/anno/bedtools copying build/lib/bap/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/anno creating build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/GRCh37.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/hg19-mm10.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/GRCm37.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/GRCh38.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/mm9.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/hg19_mm10_c.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/hg19-mm10_nochr.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/hg19.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/GRCm38.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/hg38.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/anno/TSS/mm10.refGene.TSS.bed -> build/bdist.linux-armv7l/wheel/bap/anno/TSS copying build/lib/bap/cli_bap2.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/cli_bap_frag.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/.DS_Store -> build/bdist.linux-armv7l/wheel/bap creating build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/cli_old_dontEdit.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/bap1ProjectClass.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/bapProjectClass.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/cli_reanno.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/bap2ProjectClass.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/cli_bap_bulk_frag.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/cli_bap2.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/annoall.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/cli_bap_frag.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/bapFragProjectClass.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ copying build/lib/bap/__pycache__/bapHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/__pycache__ creating build/bdist.linux-armv7l/wheel/bap/barcode copying build/lib/bap/barcode/cli_barcode.py -> build/bdist.linux-armv7l/wheel/bap/barcode copying build/lib/bap/barcode/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/barcode creating build/bdist.linux-armv7l/wheel/bap/barcode/__pycache__ copying build/lib/bap/barcode/__pycache__/cli_barcode.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/barcode/__pycache__ creating build/bdist.linux-armv7l/wheel/bap/barcode/modes copying build/lib/bap/barcode/modes/biorad_v1.py -> build/bdist.linux-armv7l/wheel/bap/barcode/modes copying build/lib/bap/barcode/modes/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/barcode/modes copying build/lib/bap/barcode/modes/biorad_v2.py -> build/bdist.linux-armv7l/wheel/bap/barcode/modes creating build/bdist.linux-armv7l/wheel/bap/barcode/modes/__pycache__ copying build/lib/bap/barcode/modes/__pycache__/barcodeHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/bap/barcode/modes/__pycache__ copying build/lib/bap/barcode/modes/biorad_v2-multi.py -> build/bdist.linux-armv7l/wheel/bap/barcode/modes copying build/lib/bap/barcode/modes/barcodeHelp.py -> build/bdist.linux-armv7l/wheel/bap/barcode/modes copying build/lib/bap/bap2ProjectClass.py -> build/bdist.linux-armv7l/wheel/bap creating build/bdist.linux-armv7l/wheel/bap/bin creating build/bdist.linux-armv7l/wheel/bap/bin/snake copying build/lib/bap/bin/snake/Snakefile.bap.chr -> build/bdist.linux-armv7l/wheel/bap/bin/snake copying build/lib/bap/bin/snake/Snakefile.bap_bulk_frags -> build/bdist.linux-armv7l/wheel/bap/bin/snake copying build/lib/bap/bin/snake/Snakefile.bap_frags -> build/bdist.linux-armv7l/wheel/bap/bin/snake copying build/lib/bap/bin/snake/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/bin/snake copying build/lib/bap/bin/snake/Snakefile.bap2.chr -> build/bdist.linux-armv7l/wheel/bap/bin/snake copying build/lib/bap/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/bin creating build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/19_makeKneePlots.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/zzz_fragOverlapMetricsBinChr_bap2.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/22_fragOverlapMetricsChr_bap2.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/26a_QCsimple_bap2.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/24_reannoFrags_bap2.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/11a_computeNCperRead.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/21_annotate_fragments.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/12_fragOverlapMetricsChr.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/21b_processRawFragments_bap_frag_bulk.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/00_knee_CL.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/16_qualityControlReport_SE.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/13_callDoublets.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/15_ncReadCleanup.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/10b_knee_execute.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/21a_annotate_fragments_bap2_frags.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/23_callDoublets_bap2.R -> build/bdist.linux-armv7l/wheel/bap/bin/R copying build/lib/bap/bin/R/26b_QCadvanced_SE_bap2.R -> build/bdist.linux-armv7l/wheel/bap/bin/R creating build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/20a_nonames_split_filt.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/.DS_Store -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/14_paintDropBarcode.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/20_names_split_filt.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/10_quantBarcode_Filt.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/25_paintDropBarcode_bap2.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/11b_annoFiltNC.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/bin/python/17_processMito.py -> build/bdist.linux-armv7l/wheel/bap/bin/python copying build/lib/bap/cli_reanno.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/cli.pyc -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/cli_bap_bulk_frag.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/__init__.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/cli_old_dontEdit.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/bapFragProjectClass.py -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/__init__.pyc -> build/bdist.linux-armv7l/wheel/bap copying build/lib/bap/bap1ProjectClass.py -> build/bdist.linux-armv7l/wheel/bap running install_egg_info Copying bap_atac.egg-info to build/bdist.linux-armv7l/wheel/bap_atac-0.6.5-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/bap_atac-0.6.5.dist-info/WHEEL creating '/tmp/pip-wheel-xmhjx92t/bap_atac-0.6.5-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'bap/.DS_Store' adding 'bap/__init__.py' adding 'bap/__init__.pyc' adding 'bap/bap1ProjectClass.py' adding 'bap/bap2ProjectClass.py' adding 'bap/bapFragProjectClass.py' adding 'bap/bapHelp.py' adding 'bap/cli.pyc' adding 'bap/cli_bap2.py' adding 'bap/cli_bap_bulk_frag.py' adding 'bap/cli_bap_frag.py' adding 'bap/cli_old_dontEdit.py' adding 'bap/cli_reanno.py' adding 'bap/__pycache__/.DS_Store' adding 'bap/__pycache__/__init__.cpython-36.pyc' adding 'bap/__pycache__/annoall.cpython-36.pyc' adding 'bap/__pycache__/bap1ProjectClass.cpython-36.pyc' adding 'bap/__pycache__/bap2ProjectClass.cpython-36.pyc' adding 'bap/__pycache__/bapFragProjectClass.cpython-36.pyc' adding 'bap/__pycache__/bapHelp.cpython-36.pyc' adding 'bap/__pycache__/bapProjectClass.cpython-36.pyc' adding 'bap/__pycache__/cli.cpython-36.pyc' adding 'bap/__pycache__/cli_bap2.cpython-36.pyc' adding 'bap/__pycache__/cli_bap_bulk_frag.cpython-36.pyc' adding 'bap/__pycache__/cli_bap_frag.cpython-36.pyc' adding 'bap/__pycache__/cli_old_dontEdit.cpython-36.pyc' adding 'bap/__pycache__/cli_reanno.cpython-36.pyc' adding 'bap/anno/.DS_Store' adding 'bap/anno/TSS/.DS_Store' adding 'bap/anno/TSS/GRCh37.refGene.TSS.bed' adding 'bap/anno/TSS/GRCh38.refGene.TSS.bed' adding 'bap/anno/TSS/GRCm37.refGene.TSS.bed' adding 'bap/anno/TSS/GRCm38.refGene.TSS.bed' adding 'bap/anno/TSS/hg19-mm10.refGene.TSS.bed' adding 'bap/anno/TSS/hg19-mm10_nochr.refGene.TSS.bed' adding 'bap/anno/TSS/hg19.refGene.TSS.bed' adding 'bap/anno/TSS/hg19_mm10_c.refGene.TSS.bed' adding 'bap/anno/TSS/hg38.refGene.TSS.bed' adding 'bap/anno/TSS/mm10.refGene.TSS.bed' adding 'bap/anno/TSS/mm9.refGene.TSS.bed' adding 'bap/anno/bedtools/chrom_GRCh37.sizes' adding 'bap/anno/bedtools/chrom_GRCh38.sizes' adding 'bap/anno/bedtools/chrom_GRCm37.sizes' adding 'bap/anno/bedtools/chrom_GRCm38.sizes' adding 'bap/anno/bedtools/chrom_hg19-mm10.sizes' adding 'bap/anno/bedtools/chrom_hg19-mm10_nochr.sizes' adding 'bap/anno/bedtools/chrom_hg19.sizes' adding 'bap/anno/bedtools/chrom_hg19_mm10_c.sizes' adding 'bap/anno/bedtools/chrom_hg38.sizes' adding 'bap/anno/bedtools/chrom_mm10.sizes' adding 'bap/anno/bedtools/chrom_mm9.sizes' adding 'bap/anno/blacklist/GRCh37.full.blacklist.bed' adding 'bap/anno/blacklist/GRCh38.full.blacklist.bed' adding 'bap/anno/blacklist/GRCm37.full.blacklist.bed' adding 'bap/anno/blacklist/GRCm38.full.blacklist.bed' adding 'bap/anno/blacklist/hg19-mm10.full.blacklist.bed' adding 'bap/anno/blacklist/hg19-mm10_nochr.full.blacklist.bed' adding 'bap/anno/blacklist/hg19.full.blacklist.bed' adding 'bap/anno/blacklist/hg19_mm10_c.full.blacklist.bed' adding 'bap/anno/blacklist/hg38.full.blacklist.bed' adding 'bap/anno/blacklist/mm10.full.blacklist.bed' adding 'bap/anno/blacklist/mm9.full.blacklist.bed' adding 'bap/barcode/.DS_Store' adding 'bap/barcode/cli_barcode.py' adding 'bap/barcode/__pycache__/cli_barcode.cpython-36.pyc' adding 'bap/barcode/modes/.DS_Store' adding 'bap/barcode/modes/barcodeHelp.py' adding 'bap/barcode/modes/biorad_v1.py' adding 'bap/barcode/modes/biorad_v2-multi.py' adding 'bap/barcode/modes/biorad_v2.py' adding 'bap/barcode/modes/__pycache__/barcodeHelp.cpython-36.pyc' adding 'bap/bin/.DS_Store' adding 'bap/bin/R/.DS_Store' adding 'bap/bin/R/00_knee_CL.R' adding 'bap/bin/R/10b_knee_execute.R' adding 'bap/bin/R/11a_computeNCperRead.R' adding 'bap/bin/R/12_fragOverlapMetricsChr.R' adding 'bap/bin/R/13_callDoublets.R' adding 'bap/bin/R/15_ncReadCleanup.R' adding 'bap/bin/R/16_qualityControlReport_SE.R' adding 'bap/bin/R/19_makeKneePlots.R' adding 'bap/bin/R/21_annotate_fragments.R' adding 'bap/bin/R/21a_annotate_fragments_bap2_frags.R' adding 'bap/bin/R/21b_processRawFragments_bap_frag_bulk.R' adding 'bap/bin/R/22_fragOverlapMetricsChr_bap2.R' adding 'bap/bin/R/23_callDoublets_bap2.R' adding 'bap/bin/R/24_reannoFrags_bap2.R' adding 'bap/bin/R/26a_QCsimple_bap2.R' adding 'bap/bin/R/26b_QCadvanced_SE_bap2.R' adding 'bap/bin/R/zzz_fragOverlapMetricsBinChr_bap2.R' adding 'bap/bin/python/.DS_Store' adding 'bap/bin/python/10_quantBarcode_Filt.py' adding 'bap/bin/python/11b_annoFiltNC.py' adding 'bap/bin/python/14_paintDropBarcode.py' adding 'bap/bin/python/17_processMito.py' adding 'bap/bin/python/20_names_split_filt.py' adding 'bap/bin/python/20a_nonames_split_filt.py' adding 'bap/bin/python/25_paintDropBarcode_bap2.py' adding 'bap/bin/snake/.DS_Store' adding 'bap/bin/snake/Snakefile.bap.chr' adding 'bap/bin/snake/Snakefile.bap2.chr' adding 'bap/bin/snake/Snakefile.bap_bulk_frags' adding 'bap/bin/snake/Snakefile.bap_frags' adding 'bap_atac-0.6.5.dist-info/METADATA' adding 'bap_atac-0.6.5.dist-info/WHEEL' adding 'bap_atac-0.6.5.dist-info/entry_points.txt' adding 'bap_atac-0.6.5.dist-info/top_level.txt' adding 'bap_atac-0.6.5.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for bap-atac: finished with status 'done' Stored in directory: /tmp/tmpqf19e31n Successfully built bap-atac Cleaning up... Removing source in /tmp/pip-wheel-_5h7lmfv/bap-atac Removed build tracker '/tmp/pip-req-tracker-trz5vjq3'