Created temporary directory: /tmp/pip-ephem-wheel-cache-m9dru3mz Created temporary directory: /tmp/pip-req-tracker-bgfh1ud1 Created requirements tracker '/tmp/pip-req-tracker-bgfh1ud1' Created temporary directory: /tmp/pip-wheel-6aq_ahx9 Collecting BioSAK==1.19.1 1 location(s) to search for versions of BioSAK: * https://pypi.org/simple/biosak/ Getting page https://pypi.org/simple/biosak/ Analyzing links from page https://pypi.org/simple/biosak/ Skipping link https://files.pythonhosted.org/packages/28/97/e3a111da00ce805e2944c6404cb03c464d4e86e71df0d3aa7c43a7fd4433/BioSAK-1.18.6-py2-none-any.whl#sha256=a91ae2c9be3875559d6d8a237132e5979c42e0d1f82e673dab162018256bf317 (from https://pypi.org/simple/biosak/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/c3/0d/bdedfb2c3f936532bd3cda39e220b0cc6fd0e646f57f097b08bd2469bf65/BioSAK-1.18.6.tar.gz#sha256=57be2116fb5accb41a8ead7b008ca168f282d657d2b93cb7c97a65579ccfb643 (from https://pypi.org/simple/biosak/), version: 1.18.6 Skipping link https://files.pythonhosted.org/packages/fa/58/808c6d99f57841312c9c2c29fdebab5f4f00b2b937e22d6676840b8cf5d1/BioSAK-1.18.7-py2-none-any.whl#sha256=426c86737f2cdfee9f3c4c44f4fd930fa562602f52dc4a055ea969b89f4dfa83 (from https://pypi.org/simple/biosak/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/a2/0d/ac9840ffcf9522be8ce2e5c728baa577b4ba27ea7592d3e06eabd08942c3/BioSAK-1.18.7.tar.gz#sha256=726701dd2770351c60ae00875937b400ba196a71b9f3e6acde54ec620b99e545 (from https://pypi.org/simple/biosak/), version: 1.18.7 Skipping link https://files.pythonhosted.org/packages/5f/f0/686ebc7bef4a6ea8fd7fe1958941a663f4af3bd5216b5679879b2218ecaa/BioSAK-1.18.8-py2-none-any.whl#sha256=e46e393f606a6972eae89dab76fae24b8aa7560893f1c5a4d7dc2eaa6ce2a0e6 (from https://pypi.org/simple/biosak/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/54/02/1fe3f3d19302c7263c7a737de5ca340badaf78288cc248885726efe29374/BioSAK-1.18.8.tar.gz#sha256=e160037f4e4f36bea85c5d4d886d8517d52d9df54f6514113063e210e40e616f (from https://pypi.org/simple/biosak/), version: 1.18.8 Skipping link https://files.pythonhosted.org/packages/cc/1c/7c1f52481c9b370348e893d836e58c49fada93910caf3b3d8c6330562970/BioSAK-1.19.1-py2-none-any.whl#sha256=81157c9183c954a3b19653358412b7fc4cf16a02212e21cda8949a8b59b63c4a (from https://pypi.org/simple/biosak/); it is not compatible with this Python Found link https://files.pythonhosted.org/packages/e1/b6/9d3b2e66084a144d4caec01b4db3baa825fc07aa23a389f7c53100fe11fb/BioSAK-1.19.1.tar.gz#sha256=781c0bf681ccb27678586c8cd733ac2cd87278a9979fe4c15ff1163363cf7d44 (from https://pypi.org/simple/biosak/), version: 1.19.1 Using version 1.19.1 (newest of versions: 1.19.1) Created temporary directory: /tmp/pip-unpack-yeewqc0s Downloading https://files.pythonhosted.org/packages/e1/b6/9d3b2e66084a144d4caec01b4db3baa825fc07aa23a389f7c53100fe11fb/BioSAK-1.19.1.tar.gz (738kB) Downloading from URL https://files.pythonhosted.org/packages/e1/b6/9d3b2e66084a144d4caec01b4db3baa825fc07aa23a389f7c53100fe11fb/BioSAK-1.19.1.tar.gz#sha256=781c0bf681ccb27678586c8cd733ac2cd87278a9979fe4c15ff1163363cf7d44 (from https://pypi.org/simple/biosak/) Added BioSAK==1.19.1 from https://files.pythonhosted.org/packages/e1/b6/9d3b2e66084a144d4caec01b4db3baa825fc07aa23a389f7c53100fe11fb/BioSAK-1.19.1.tar.gz#sha256=781c0bf681ccb27678586c8cd733ac2cd87278a9979fe4c15ff1163363cf7d44 to build tracker '/tmp/pip-req-tracker-bgfh1ud1' Running setup.py (path:/tmp/pip-wheel-6aq_ahx9/BioSAK/setup.py) egg_info for package BioSAK Running command python setup.py egg_info running egg_info creating pip-egg-info/BioSAK.egg-info writing requirements to pip-egg-info/BioSAK.egg-info/requires.txt writing top-level names to pip-egg-info/BioSAK.egg-info/top_level.txt writing pip-egg-info/BioSAK.egg-info/PKG-INFO writing dependency_links to pip-egg-info/BioSAK.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'BioSAK/select_contig.pl' warning: no files found matching 'BioSAK/get_fasta_stats.pl' writing manifest file 'pip-egg-info/BioSAK.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-6aq_ahx9/BioSAK has version 1.19.1, which satisfies requirement BioSAK==1.19.1 from https://files.pythonhosted.org/packages/e1/b6/9d3b2e66084a144d4caec01b4db3baa825fc07aa23a389f7c53100fe11fb/BioSAK-1.19.1.tar.gz#sha256=781c0bf681ccb27678586c8cd733ac2cd87278a9979fe4c15ff1163363cf7d44 Removed BioSAK==1.19.1 from https://files.pythonhosted.org/packages/e1/b6/9d3b2e66084a144d4caec01b4db3baa825fc07aa23a389f7c53100fe11fb/BioSAK-1.19.1.tar.gz#sha256=781c0bf681ccb27678586c8cd733ac2cd87278a9979fe4c15ff1163363cf7d44 from build tracker '/tmp/pip-req-tracker-bgfh1ud1' Building wheels for collected packages: BioSAK Created temporary directory: /tmp/pip-wheel-0qfov_zm Running setup.py bdist_wheel for BioSAK: started Destination directory: /tmp/pip-wheel-0qfov_zm Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-6aq_ahx9/BioSAK/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-0qfov_zm running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/BioSAK copying BioSAK/Gene2Ctg.py -> build/lib/BioSAK copying BioSAK/BacDive.py -> build/lib/BioSAK copying BioSAK/fq2fa.py -> build/lib/BioSAK copying BioSAK/Newick_tree_plotter.py -> build/lib/BioSAK copying BioSAK/SankeyTaxon.py -> build/lib/BioSAK copying BioSAK/get_gene_depth.py -> build/lib/BioSAK copying BioSAK/Subset_tree.py -> build/lib/BioSAK copying BioSAK/select_seq.py -> build/lib/BioSAK copying BioSAK/KEGG_get_eukaryotic_kos.py -> build/lib/BioSAK copying BioSAK/get_aa_composition.py -> build/lib/BioSAK copying BioSAK/sep_reads_by_barcode.py -> build/lib/BioSAK copying BioSAK/get_bin_abundance.py -> build/lib/BioSAK copying BioSAK/rename_ctg.py -> build/lib/BioSAK copying BioSAK/COG2014.py -> build/lib/BioSAK copying BioSAK/boxplot_matrix_COG.py -> build/lib/BioSAK copying BioSAK/Prokka.py -> build/lib/BioSAK copying BioSAK/__init__.py -> build/lib/BioSAK copying BioSAK/dbCAN.py -> build/lib/BioSAK copying BioSAK/COG2003.py -> build/lib/BioSAK copying BioSAK/KEGG.py -> build/lib/BioSAK copying BioSAK/keep_best_hit.py -> build/lib/BioSAK copying BioSAK/Reads_simulator.py -> build/lib/BioSAK copying BioSAK/iTOL_wrapper.py -> build/lib/BioSAK copying BioSAK/get_SCG_tree.py -> build/lib/BioSAK copying BioSAK/global_functions.py -> build/lib/BioSAK copying BioSAK/sra_reads_downloader.py -> build/lib/BioSAK copying BioSAK/boxplot_matrix_COG_backup.py -> build/lib/BioSAK copying BioSAK/download_GenBank_genome.py -> build/lib/BioSAK copying BioSAK/manipulator_msa.py -> build/lib/BioSAK copying BioSAK/Prodigal.py -> build/lib/BioSAK copying BioSAK/BioSAK_config.py -> build/lib/BioSAK copying BioSAK/get_total_length.py -> build/lib/BioSAK copying BioSAK/Barrnap.py -> build/lib/BioSAK copying BioSAK/manipulator_fasta.py -> build/lib/BioSAK copying BioSAK/label_tree.py -> build/lib/BioSAK copying BioSAK/manipulator_sam.py -> build/lib/BioSAK copying BioSAK/get_reads_from_sam.py -> build/lib/BioSAK copying BioSAK/get_gc.py -> build/lib/BioSAK copying BioSAK/CheckM.py -> build/lib/BioSAK copying BioSAK/split_folder.py -> build/lib/BioSAK copying BioSAK/FastaSplitler_by_num.py -> build/lib/BioSAK copying BioSAK/boxplot_matrix_KEGG.py -> build/lib/BioSAK copying BioSAK/gbk_to_ffn_faa.py -> build/lib/BioSAK copying BioSAK/get_Pfam_hmms.py -> build/lib/BioSAK copying BioSAK/get_bin_abundance_backup.py -> build/lib/BioSAK copying BioSAK/plot_sam_depth.py -> build/lib/BioSAK copying BioSAK/FastaSplitler_by_size.py -> build/lib/BioSAK copying BioSAK/format_converter.py -> build/lib/BioSAK copying BioSAK/manipulator_newick.py -> build/lib/BioSAK running egg_info writing top-level names to BioSAK.egg-info/top_level.txt writing requirements to BioSAK.egg-info/requires.txt writing BioSAK.egg-info/PKG-INFO writing dependency_links to BioSAK.egg-info/dependency_links.txt reading manifest file 'BioSAK.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'BioSAK/select_contig.pl' warning: no files found matching 'BioSAK/get_fasta_stats.pl' writing manifest file 'BioSAK.egg-info/SOURCES.txt' copying BioSAK/MetaCHIP_phylo.hmm -> build/lib/BioSAK copying BioSAK/VERSION -> build/lib/BioSAK copying BioSAK/cdd2cog.pl -> build/lib/BioSAK copying BioSAK/get_sankey_plot.R -> build/lib/BioSAK running build_scripts creating build/scripts-3.4 copying and adjusting bin/BioSAK -> build/scripts-3.4 changing mode of build/scripts-3.4/BioSAK from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Gene2Ctg.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/BacDive.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/fq2fa.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Newick_tree_plotter.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/SankeyTaxon.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_gene_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Subset_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/select_seq.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/KEGG_get_eukaryotic_kos.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_aa_composition.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/sep_reads_by_barcode.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_bin_abundance.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/rename_ctg.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/COG2014.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/boxplot_matrix_COG.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Prokka.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/__init__.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/dbCAN.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/COG2003.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/keep_best_hit.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/VERSION -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Reads_simulator.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/iTOL_wrapper.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_SCG_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/global_functions.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/sra_reads_downloader.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/boxplot_matrix_COG_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_sankey_plot.R -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/download_GenBank_genome.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/MetaCHIP_phylo.hmm -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_msa.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Prodigal.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/BioSAK_config.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_total_length.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/Barrnap.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_fasta.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/label_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_reads_from_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_gc.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/CheckM.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/split_folder.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/FastaSplitler_by_num.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/boxplot_matrix_KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/gbk_to_ffn_faa.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/cdd2cog.pl -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_Pfam_hmms.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/get_bin_abundance_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/plot_sam_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/FastaSplitler_by_size.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/format_converter.py -> build/bdist.linux-armv7l/wheel/BioSAK copying build/lib/BioSAK/manipulator_newick.py -> build/bdist.linux-armv7l/wheel/BioSAK running install_egg_info Copying BioSAK.egg-info to build/bdist.linux-armv7l/wheel/BioSAK-1.19.1-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/BioSAK-1.19.1.data creating build/bdist.linux-armv7l/wheel/BioSAK-1.19.1.data/scripts copying build/scripts-3.4/BioSAK -> build/bdist.linux-armv7l/wheel/BioSAK-1.19.1.data/scripts changing mode of build/bdist.linux-armv7l/wheel/BioSAK-1.19.1.data/scripts/BioSAK to 755 creating build/bdist.linux-armv7l/wheel/BioSAK-1.19.1.dist-info/WHEEL creating '/tmp/pip-wheel-0qfov_zm/BioSAK-1.19.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'BioSAK/BacDive.py' adding 'BioSAK/Barrnap.py' adding 'BioSAK/BioSAK_config.py' adding 'BioSAK/COG2003.py' adding 'BioSAK/COG2014.py' adding 'BioSAK/CheckM.py' adding 'BioSAK/FastaSplitler_by_num.py' adding 'BioSAK/FastaSplitler_by_size.py' adding 'BioSAK/Gene2Ctg.py' adding 'BioSAK/KEGG.py' adding 'BioSAK/KEGG_get_eukaryotic_kos.py' adding 'BioSAK/MetaCHIP_phylo.hmm' adding 'BioSAK/Newick_tree_plotter.py' adding 'BioSAK/Prodigal.py' adding 'BioSAK/Prokka.py' adding 'BioSAK/Reads_simulator.py' adding 'BioSAK/SankeyTaxon.py' adding 'BioSAK/Subset_tree.py' adding 'BioSAK/VERSION' adding 'BioSAK/__init__.py' adding 'BioSAK/boxplot_matrix_COG.py' adding 'BioSAK/boxplot_matrix_COG_backup.py' adding 'BioSAK/boxplot_matrix_KEGG.py' adding 'BioSAK/cdd2cog.pl' adding 'BioSAK/dbCAN.py' adding 'BioSAK/download_GenBank_genome.py' adding 'BioSAK/format_converter.py' adding 'BioSAK/fq2fa.py' adding 'BioSAK/gbk_to_ffn_faa.py' adding 'BioSAK/get_Pfam_hmms.py' adding 'BioSAK/get_SCG_tree.py' adding 'BioSAK/get_aa_composition.py' adding 'BioSAK/get_bin_abundance.py' adding 'BioSAK/get_bin_abundance_backup.py' adding 'BioSAK/get_gc.py' adding 'BioSAK/get_gene_depth.py' adding 'BioSAK/get_reads_from_sam.py' adding 'BioSAK/get_sankey_plot.R' adding 'BioSAK/get_total_length.py' adding 'BioSAK/global_functions.py' adding 'BioSAK/iTOL_wrapper.py' adding 'BioSAK/keep_best_hit.py' adding 'BioSAK/label_tree.py' adding 'BioSAK/manipulator_fasta.py' adding 'BioSAK/manipulator_msa.py' adding 'BioSAK/manipulator_newick.py' adding 'BioSAK/manipulator_sam.py' adding 'BioSAK/plot_sam_depth.py' adding 'BioSAK/rename_ctg.py' adding 'BioSAK/select_seq.py' adding 'BioSAK/sep_reads_by_barcode.py' adding 'BioSAK/split_folder.py' adding 'BioSAK/sra_reads_downloader.py' adding 'BioSAK-1.19.1.data/scripts/BioSAK' adding 'BioSAK-1.19.1.dist-info/METADATA' adding 'BioSAK-1.19.1.dist-info/WHEEL' adding 'BioSAK-1.19.1.dist-info/top_level.txt' adding 'BioSAK-1.19.1.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for BioSAK: finished with status 'done' Stored in directory: /tmp/tmp9324xiwi Successfully built BioSAK Cleaning up... Removing source in /tmp/pip-wheel-6aq_ahx9/BioSAK Removed build tracker '/tmp/pip-req-tracker-bgfh1ud1'