Created temporary directory: /tmp/pip-ephem-wheel-cache-oz99wnd2 Created temporary directory: /tmp/pip-req-tracker-5c111rtj Created requirements tracker '/tmp/pip-req-tracker-5c111rtj' Created temporary directory: /tmp/pip-wheel-j5x66vbu Collecting RouToolPa==0.83 1 location(s) to search for versions of RouToolPa: * https://pypi.org/simple/routoolpa/ Getting page https://pypi.org/simple/routoolpa/ Analyzing links from page https://pypi.org/simple/routoolpa/ Found link https://files.pythonhosted.org/packages/25/2a/d654c1f3fba268cfeb0d01f93a9738f392a5be2d4b6c150dd45df123299b/RouToolPa-0.80.tar.gz#sha256=667d3b75011c9c2f73c9431785c187868b3150ba886934f29b77f780361230c3 (from https://pypi.org/simple/routoolpa/), version: 0.80 Found link https://files.pythonhosted.org/packages/ff/1e/893e5d09013dbd46bafa9e83d49c5cca34b285ad698d1f75bc452ab3ac64/RouToolPa-0.82.tar.gz#sha256=bab9660e0d3040ddf32c19747a518573f586c9629777c3b09c4fac4b9dd3a8c4 (from https://pypi.org/simple/routoolpa/), version: 0.82 Found link https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 (from https://pypi.org/simple/routoolpa/), version: 0.83 Using version 0.83 (newest of versions: 0.83) Created temporary directory: /tmp/pip-unpack-txeb_xby Downloading https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz (335kB) Downloading from URL https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 (from https://pypi.org/simple/routoolpa/) Added RouToolPa==0.83 from https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 to build tracker '/tmp/pip-req-tracker-5c111rtj' Running setup.py (path:/tmp/pip-wheel-j5x66vbu/RouToolPa/setup.py) egg_info for package RouToolPa Running command python setup.py egg_info running egg_info creating pip-egg-info/RouToolPa.egg-info writing requirements to pip-egg-info/RouToolPa.egg-info/requires.txt writing top-level names to pip-egg-info/RouToolPa.egg-info/top_level.txt writing dependency_links to pip-egg-info/RouToolPa.egg-info/dependency_links.txt writing pip-egg-info/RouToolPa.egg-info/PKG-INFO writing manifest file 'pip-egg-info/RouToolPa.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/RouToolPa.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/RouToolPa.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-j5x66vbu/RouToolPa has version 0.83, which satisfies requirement RouToolPa==0.83 from https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 Removed RouToolPa==0.83 from https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 from build tracker '/tmp/pip-req-tracker-5c111rtj' Building wheels for collected packages: RouToolPa Created temporary directory: /tmp/pip-wheel-g3yu8wso Running setup.py bdist_wheel for RouToolPa: started Destination directory: /tmp/pip-wheel-g3yu8wso Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-j5x66vbu/RouToolPa/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-g3yu8wso running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/RouToolPa copying RouToolPa/__init__.py -> build/lib/RouToolPa creating build/lib/RouToolPa/Routines copying RouToolPa/Routines/Fastq.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/SequenceCluster.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Ensembl.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/GO.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Project.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Evolution.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Annotations.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/TreeFam.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Math.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/MultipleAlignment.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/NCBI.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Sequence.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Matplotlib.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/EggNOG.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Expression.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Alignment.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Tree.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/__init__.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/MtDNA.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/File.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Pacbio.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/VCF.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Primer.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Drawing.py -> build/lib/RouToolPa/Routines copying RouToolPa/Routines/Phylogenetics.py -> build/lib/RouToolPa/Routines creating build/lib/RouToolPa/Tools copying RouToolPa/Tools/Abstract.py -> build/lib/RouToolPa/Tools copying RouToolPa/Tools/Picard.py -> build/lib/RouToolPa/Tools copying RouToolPa/Tools/TVC.py -> build/lib/RouToolPa/Tools copying RouToolPa/Tools/AssemblyTools.py -> build/lib/RouToolPa/Tools copying RouToolPa/Tools/__init__.py -> build/lib/RouToolPa/Tools copying RouToolPa/Tools/RepeatSearchTools.py -> build/lib/RouToolPa/Tools creating build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/GVF.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/PLINK.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/LAST.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Abstract.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/TRF.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Trimmomatic.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/BUSCO.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Coockiecutter.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/FaCut.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/General.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/MultipleAlignment.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Cufflinks.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Sequence.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/PAML.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Barrnap.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/HGMD.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/CAFE.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/SNPeff.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/__init__.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/GFF.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Primer3.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Dovetail.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/FastQC.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/VCF.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/R.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/BLAST.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/VCFOld.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/Haploview.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/CCFOld.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/DESeq2.py -> build/lib/RouToolPa/Parsers copying RouToolPa/Parsers/KrATER.py -> build/lib/RouToolPa/Parsers creating build/lib/RouToolPa/Formats copying RouToolPa/Formats/VariantFormats.py -> build/lib/RouToolPa/Formats copying RouToolPa/Formats/AnnotationFormats.py -> build/lib/RouToolPa/Formats copying RouToolPa/Formats/__init__.py -> build/lib/RouToolPa/Formats copying RouToolPa/Formats/AlignmentFormats.py -> build/lib/RouToolPa/Formats creating build/lib/RouToolPa/Collections copying RouToolPa/Collections/General.py -> build/lib/RouToolPa/Collections copying RouToolPa/Collections/__init__.py -> build/lib/RouToolPa/Collections creating build/lib/RouToolPa/Tools/Clustering copying RouToolPa/Tools/Clustering/CDHit.py -> build/lib/RouToolPa/Tools/Clustering copying RouToolPa/Tools/Clustering/__init__.py -> build/lib/RouToolPa/Tools/Clustering creating build/lib/RouToolPa/Tools/EMPHF copying RouToolPa/Tools/EMPHF/EMPHF.py -> build/lib/RouToolPa/Tools/EMPHF copying RouToolPa/Tools/EMPHF/__init__.py -> build/lib/RouToolPa/Tools/EMPHF creating build/lib/RouToolPa/Tools/BLAST copying RouToolPa/Tools/BLAST/__init__.py -> build/lib/RouToolPa/Tools/BLAST copying RouToolPa/Tools/BLAST/BLASTPlus.py -> build/lib/RouToolPa/Tools/BLAST copying RouToolPa/Tools/BLAST/BLAST.py -> build/lib/RouToolPa/Tools/BLAST creating build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/Bowtie2.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/GEM.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/Tophat.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/LongRanger.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/BLAT.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/Novoalign.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/__init__.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/BWA.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/TMAP.py -> build/lib/RouToolPa/Tools/Alignment copying RouToolPa/Tools/Alignment/STAR.py -> build/lib/RouToolPa/Tools/Alignment creating build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/ExaBayes.py -> build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/Gblocks.py -> build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/MrBayes.py -> build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/RAxML.py -> build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/PartitionFinder.py -> build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/__init__.py -> build/lib/RouToolPa/Tools/Phylogenetics copying RouToolPa/Tools/Phylogenetics/ExaML.py -> build/lib/RouToolPa/Tools/Phylogenetics creating build/lib/RouToolPa/Tools/Stirka copying RouToolPa/Tools/Stirka/Trimmer.py -> build/lib/RouToolPa/Tools/Stirka copying RouToolPa/Tools/Stirka/__init__.py -> build/lib/RouToolPa/Tools/Stirka creating build/lib/RouToolPa/Tools/RepeatMasking copying RouToolPa/Tools/RepeatMasking/TRF.py -> build/lib/RouToolPa/Tools/RepeatMasking copying RouToolPa/Tools/RepeatMasking/RepeatScout.py -> build/lib/RouToolPa/Tools/RepeatMasking copying RouToolPa/Tools/RepeatMasking/__init__.py -> build/lib/RouToolPa/Tools/RepeatMasking copying RouToolPa/Tools/RepeatMasking/RepeatModeler.py -> build/lib/RouToolPa/Tools/RepeatMasking copying RouToolPa/Tools/RepeatMasking/RepeatMasker.py -> build/lib/RouToolPa/Tools/RepeatMasking creating build/lib/RouToolPa/Tools/AIndex copying RouToolPa/Tools/AIndex/AIndex.py -> build/lib/RouToolPa/Tools/AIndex copying RouToolPa/Tools/AIndex/__init__.py -> build/lib/RouToolPa/Tools/AIndex creating build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/Abstract.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/GenotypeGVCFs4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/SelectVariants4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/BaseRecalibrator4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/VariantFiltration4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/SortVcf4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/GenomicsDBImport4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/CombineVariants4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/__init__.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/UnifiedGenotyper.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/ValidateVariants4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/CombineGVCFs4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/AnalyzeCovariates4.py -> build/lib/RouToolPa/Tools/GATK4 copying RouToolPa/Tools/GATK4/HaplotypeCaller4.py -> build/lib/RouToolPa/Tools/GATK4 creating build/lib/RouToolPa/Tools/Population copying RouToolPa/Tools/Population/PLINK.py -> build/lib/RouToolPa/Tools/Population copying RouToolPa/Tools/Population/PSMC.py -> build/lib/RouToolPa/Tools/Population copying RouToolPa/Tools/Population/__init__.py -> build/lib/RouToolPa/Tools/Population creating build/lib/RouToolPa/Tools/Picard copying RouToolPa/Tools/Picard/CreateSequenceDictionary.py -> build/lib/RouToolPa/Tools/Picard copying RouToolPa/Tools/Picard/SortVcf.py -> build/lib/RouToolPa/Tools/Picard copying RouToolPa/Tools/Picard/MarkDuplicates.py -> build/lib/RouToolPa/Tools/Picard copying RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py -> build/lib/RouToolPa/Tools/Picard copying RouToolPa/Tools/Picard/__init__.py -> build/lib/RouToolPa/Tools/Picard creating build/lib/RouToolPa/Tools/Scaffolders copying RouToolPa/Tools/Scaffolders/LRNAScaffolder.py -> build/lib/RouToolPa/Tools/Scaffolders copying RouToolPa/Tools/Scaffolders/SSPACE.py -> build/lib/RouToolPa/Tools/Scaffolders copying RouToolPa/Tools/Scaffolders/__init__.py -> build/lib/RouToolPa/Tools/Scaffolders creating build/lib/RouToolPa/Tools/LinuxTools copying RouToolPa/Tools/LinuxTools/CGAS.py -> build/lib/RouToolPa/Tools/LinuxTools copying RouToolPa/Tools/LinuxTools/Valgrind.py -> build/lib/RouToolPa/Tools/LinuxTools copying RouToolPa/Tools/LinuxTools/__init__.py -> build/lib/RouToolPa/Tools/LinuxTools copying RouToolPa/Tools/LinuxTools/Download.py -> build/lib/RouToolPa/Tools/LinuxTools creating build/lib/RouToolPa/Tools/Expression copying RouToolPa/Tools/Expression/HTSeq.py -> build/lib/RouToolPa/Tools/Expression copying RouToolPa/Tools/Expression/Cufflinks.py -> build/lib/RouToolPa/Tools/Expression copying RouToolPa/Tools/Expression/__init__.py -> build/lib/RouToolPa/Tools/Expression copying RouToolPa/Tools/Expression/Subread.py -> build/lib/RouToolPa/Tools/Expression creating build/lib/RouToolPa/Tools/ImageMagick copying RouToolPa/Tools/ImageMagick/Convert.py -> build/lib/RouToolPa/Tools/ImageMagick copying RouToolPa/Tools/ImageMagick/__init__.py -> build/lib/RouToolPa/Tools/ImageMagick creating build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/Intersect.py -> build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/GetFasta.py -> build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/Flank.py -> build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/__init__.py -> build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/GenomeCov.py -> build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/MaskFasta.py -> build/lib/RouToolPa/Tools/Bedtools copying RouToolPa/Tools/Bedtools/BamToFastq.py -> build/lib/RouToolPa/Tools/Bedtools creating build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/BUSCO.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/Barrnap.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/AUGUSTUS.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/VEP.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/TransDecoder.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/SNPeff.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/__init__.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/GlimerHMM.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/Emapper.py -> build/lib/RouToolPa/Tools/Annotation copying RouToolPa/Tools/Annotation/Exonerate.py -> build/lib/RouToolPa/Tools/Annotation creating build/lib/RouToolPa/Tools/BioFormats copying RouToolPa/Tools/BioFormats/BioConvert.py -> build/lib/RouToolPa/Tools/BioFormats copying RouToolPa/Tools/BioFormats/__init__.py -> build/lib/RouToolPa/Tools/BioFormats creating build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/Abstract.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/PrintReads.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/ApplyRecalibration.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/HaplotypeCaller.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/AnalyzeCovariates.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/GenotypeGVCFs.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/SelectVariants.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/BaseRecalibrator.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/VariantRecalibrator.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/ValidateVariants.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/RealignerTargetCreator.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/VariantFiltration.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/CombineVariants.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/IndelRealigner.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/__init__.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/UnifiedGenotyper.py -> build/lib/RouToolPa/Tools/GATK copying RouToolPa/Tools/GATK/CatVariants.py -> build/lib/RouToolPa/Tools/GATK creating build/lib/RouToolPa/Tools/SRAToolkit copying RouToolPa/Tools/SRAToolkit/__init__.py -> build/lib/RouToolPa/Tools/SRAToolkit copying RouToolPa/Tools/SRAToolkit/FastqDump.py -> build/lib/RouToolPa/Tools/SRAToolkit creating build/lib/RouToolPa/Tools/Kmers copying RouToolPa/Tools/Kmers/Jellyfish.py -> build/lib/RouToolPa/Tools/Kmers copying RouToolPa/Tools/Kmers/__init__.py -> build/lib/RouToolPa/Tools/Kmers copying RouToolPa/Tools/Kmers/GenomeTester4.py -> build/lib/RouToolPa/Tools/Kmers creating build/lib/RouToolPa/Tools/Samtools copying RouToolPa/Tools/Samtools/Samtools.py -> build/lib/RouToolPa/Tools/Samtools copying RouToolPa/Tools/Samtools/__init__.py -> build/lib/RouToolPa/Tools/Samtools creating build/lib/RouToolPa/Tools/Evolution copying RouToolPa/Tools/Evolution/__init__.py -> build/lib/RouToolPa/Tools/Evolution creating build/lib/RouToolPa/Tools/WGA copying RouToolPa/Tools/WGA/LAST.py -> build/lib/RouToolPa/Tools/WGA copying RouToolPa/Tools/WGA/__init__.py -> build/lib/RouToolPa/Tools/WGA creating build/lib/RouToolPa/Tools/GapClosers copying RouToolPa/Tools/GapClosers/__init__.py -> build/lib/RouToolPa/Tools/GapClosers copying RouToolPa/Tools/GapClosers/GapFiller.py -> build/lib/RouToolPa/Tools/GapClosers copying RouToolPa/Tools/GapClosers/Sealer.py -> build/lib/RouToolPa/Tools/GapClosers creating build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/NextClip.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/Trimmomatic.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/FaCut.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/Adapters.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/TrimGalore.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/Cutadapt.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/Clumpify.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/Cookiecutter.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/__init__.py -> build/lib/RouToolPa/Tools/Filter copying RouToolPa/Tools/Filter/FastQC.py -> build/lib/RouToolPa/Tools/Filter creating build/lib/RouToolPa/Tools/PacBio copying RouToolPa/Tools/PacBio/SMRTLink4.py -> build/lib/RouToolPa/Tools/PacBio copying RouToolPa/Tools/PacBio/__init__.py -> build/lib/RouToolPa/Tools/PacBio creating build/lib/RouToolPa/Tools/Primers copying RouToolPa/Tools/Primers/__init__.py -> build/lib/RouToolPa/Tools/Primers copying RouToolPa/Tools/Primers/Primer3.py -> build/lib/RouToolPa/Tools/Primers creating build/lib/RouToolPa/Tools/MultipleAlignment copying RouToolPa/Tools/MultipleAlignment/PRANK.py -> build/lib/RouToolPa/Tools/MultipleAlignment copying RouToolPa/Tools/MultipleAlignment/MAFFT.py -> build/lib/RouToolPa/Tools/MultipleAlignment copying RouToolPa/Tools/MultipleAlignment/SWAMP.py -> build/lib/RouToolPa/Tools/MultipleAlignment copying RouToolPa/Tools/MultipleAlignment/__init__.py -> build/lib/RouToolPa/Tools/MultipleAlignment copying RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py -> build/lib/RouToolPa/Tools/MultipleAlignment creating build/lib/RouToolPa/Tools/HMMER copying RouToolPa/Tools/HMMER/HMMER3.py -> build/lib/RouToolPa/Tools/HMMER copying RouToolPa/Tools/HMMER/__init__.py -> build/lib/RouToolPa/Tools/HMMER creating build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/MaSuRCA.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/DISCOVAR.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/Supernova.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/Quast.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/PEAR.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/BionanoSolve.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/Fermi.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/__init__.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/Platanus.py -> build/lib/RouToolPa/Tools/Assemblers copying RouToolPa/Tools/Assemblers/Spades.py -> build/lib/RouToolPa/Tools/Assemblers creating build/lib/RouToolPa/Tools/Evolution/PAML copying RouToolPa/Tools/Evolution/PAML/Codeml.py -> build/lib/RouToolPa/Tools/Evolution/PAML copying RouToolPa/Tools/Evolution/PAML/MCMCTree.py -> build/lib/RouToolPa/Tools/Evolution/PAML copying RouToolPa/Tools/Evolution/PAML/__init__.py -> build/lib/RouToolPa/Tools/Evolution/PAML installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/RouToolPa creating build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Fastq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/SequenceCluster.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Ensembl.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/GO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Project.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Evolution.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Annotations.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/TreeFam.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Math.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/MultipleAlignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/NCBI.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Sequence.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Matplotlib.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/EggNOG.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Expression.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Alignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Tree.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/MtDNA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/File.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Pacbio.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/VCF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Primer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Drawing.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines copying build/lib/RouToolPa/Routines/Phylogenetics.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools copying build/lib/RouToolPa/Tools/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering copying build/lib/RouToolPa/Tools/Clustering/CDHit.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering copying build/lib/RouToolPa/Tools/Clustering/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF copying build/lib/RouToolPa/Tools/EMPHF/EMPHF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF copying build/lib/RouToolPa/Tools/EMPHF/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST copying build/lib/RouToolPa/Tools/BLAST/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST copying build/lib/RouToolPa/Tools/BLAST/BLASTPlus.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST copying build/lib/RouToolPa/Tools/BLAST/BLAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/Bowtie2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/GEM.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/Tophat.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/LongRanger.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/BLAT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/Novoalign.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/BWA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/TMAP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment copying build/lib/RouToolPa/Tools/Alignment/STAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/ExaBayes.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/Gblocks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/MrBayes.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/RAxML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/PartitionFinder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics copying build/lib/RouToolPa/Tools/Phylogenetics/ExaML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka copying build/lib/RouToolPa/Tools/Stirka/Trimmer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka copying build/lib/RouToolPa/Tools/Stirka/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka copying build/lib/RouToolPa/Tools/Picard.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking copying build/lib/RouToolPa/Tools/RepeatMasking/TRF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatScout.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking copying build/lib/RouToolPa/Tools/RepeatMasking/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatModeler.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatMasker.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex copying build/lib/RouToolPa/Tools/AIndex/AIndex.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex copying build/lib/RouToolPa/Tools/AIndex/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/GenotypeGVCFs4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/SelectVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/BaseRecalibrator4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/VariantFiltration4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/SortVcf4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/GenomicsDBImport4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/CombineVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/UnifiedGenotyper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/ValidateVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/CombineGVCFs4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/AnalyzeCovariates4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 copying build/lib/RouToolPa/Tools/GATK4/HaplotypeCaller4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population copying build/lib/RouToolPa/Tools/Population/PLINK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population copying build/lib/RouToolPa/Tools/Population/PSMC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population copying build/lib/RouToolPa/Tools/Population/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard copying build/lib/RouToolPa/Tools/Picard/CreateSequenceDictionary.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard copying build/lib/RouToolPa/Tools/Picard/SortVcf.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard copying build/lib/RouToolPa/Tools/Picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard copying build/lib/RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard copying build/lib/RouToolPa/Tools/Picard/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders copying build/lib/RouToolPa/Tools/Scaffolders/LRNAScaffolder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders copying build/lib/RouToolPa/Tools/Scaffolders/SSPACE.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders copying build/lib/RouToolPa/Tools/Scaffolders/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools copying build/lib/RouToolPa/Tools/LinuxTools/CGAS.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools copying build/lib/RouToolPa/Tools/LinuxTools/Valgrind.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools copying build/lib/RouToolPa/Tools/LinuxTools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools copying build/lib/RouToolPa/Tools/LinuxTools/Download.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression copying build/lib/RouToolPa/Tools/Expression/HTSeq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression copying build/lib/RouToolPa/Tools/Expression/Cufflinks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression copying build/lib/RouToolPa/Tools/Expression/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression copying build/lib/RouToolPa/Tools/Expression/Subread.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick copying build/lib/RouToolPa/Tools/ImageMagick/Convert.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick copying build/lib/RouToolPa/Tools/ImageMagick/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick copying build/lib/RouToolPa/Tools/TVC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/Intersect.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/GetFasta.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/Flank.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/GenomeCov.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/MaskFasta.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/Bedtools/BamToFastq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools copying build/lib/RouToolPa/Tools/AssemblyTools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/BUSCO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/Barrnap.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/AUGUSTUS.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/VEP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/TransDecoder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/SNPeff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/GlimerHMM.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/Emapper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation copying build/lib/RouToolPa/Tools/Annotation/Exonerate.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats copying build/lib/RouToolPa/Tools/BioFormats/BioConvert.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats copying build/lib/RouToolPa/Tools/BioFormats/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/PrintReads.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/ApplyRecalibration.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/HaplotypeCaller.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/AnalyzeCovariates.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/GenotypeGVCFs.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/SelectVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/BaseRecalibrator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/VariantRecalibrator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/ValidateVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/RealignerTargetCreator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/VariantFiltration.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/CombineVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/IndelRealigner.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/UnifiedGenotyper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK copying build/lib/RouToolPa/Tools/GATK/CatVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit copying build/lib/RouToolPa/Tools/SRAToolkit/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit copying build/lib/RouToolPa/Tools/SRAToolkit/FastqDump.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit copying build/lib/RouToolPa/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers copying build/lib/RouToolPa/Tools/Kmers/Jellyfish.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers copying build/lib/RouToolPa/Tools/Kmers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers copying build/lib/RouToolPa/Tools/Kmers/GenomeTester4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools copying build/lib/RouToolPa/Tools/Samtools/Samtools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools copying build/lib/RouToolPa/Tools/Samtools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML copying build/lib/RouToolPa/Tools/Evolution/PAML/Codeml.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML copying build/lib/RouToolPa/Tools/Evolution/PAML/MCMCTree.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML copying build/lib/RouToolPa/Tools/Evolution/PAML/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML copying build/lib/RouToolPa/Tools/Evolution/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA copying build/lib/RouToolPa/Tools/WGA/LAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA copying build/lib/RouToolPa/Tools/WGA/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers copying build/lib/RouToolPa/Tools/GapClosers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers copying build/lib/RouToolPa/Tools/GapClosers/GapFiller.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers copying build/lib/RouToolPa/Tools/GapClosers/Sealer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/NextClip.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/Trimmomatic.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/FaCut.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/Adapters.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/TrimGalore.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/Cutadapt.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/Clumpify.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/Cookiecutter.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter copying build/lib/RouToolPa/Tools/Filter/FastQC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio copying build/lib/RouToolPa/Tools/PacBio/SMRTLink4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio copying build/lib/RouToolPa/Tools/PacBio/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio copying build/lib/RouToolPa/Tools/RepeatSearchTools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers copying build/lib/RouToolPa/Tools/Primers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers copying build/lib/RouToolPa/Tools/Primers/Primer3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment copying build/lib/RouToolPa/Tools/MultipleAlignment/PRANK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment copying build/lib/RouToolPa/Tools/MultipleAlignment/MAFFT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment copying build/lib/RouToolPa/Tools/MultipleAlignment/SWAMP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment copying build/lib/RouToolPa/Tools/MultipleAlignment/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment copying build/lib/RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER copying build/lib/RouToolPa/Tools/HMMER/HMMER3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER copying build/lib/RouToolPa/Tools/HMMER/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/MaSuRCA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/DISCOVAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/Supernova.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/Quast.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/PEAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/BionanoSolve.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/Fermi.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/Platanus.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers copying build/lib/RouToolPa/Tools/Assemblers/Spades.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers creating build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/GVF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/PLINK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/LAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/TRF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Trimmomatic.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/BUSCO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Coockiecutter.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/FaCut.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/General.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/MultipleAlignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Cufflinks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Sequence.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/PAML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Barrnap.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/HGMD.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/CAFE.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/SNPeff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/GFF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Primer3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Dovetail.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/FastQC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/VCF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/R.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/BLAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/VCFOld.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/Haploview.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/CCFOld.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/DESeq2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/Parsers/KrATER.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers copying build/lib/RouToolPa/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa creating build/bdist.linux-armv7l/wheel/RouToolPa/Formats copying build/lib/RouToolPa/Formats/VariantFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats copying build/lib/RouToolPa/Formats/AnnotationFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats copying build/lib/RouToolPa/Formats/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats copying build/lib/RouToolPa/Formats/AlignmentFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats creating build/bdist.linux-armv7l/wheel/RouToolPa/Collections copying build/lib/RouToolPa/Collections/General.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Collections copying build/lib/RouToolPa/Collections/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Collections running install_egg_info running egg_info writing dependency_links to RouToolPa.egg-info/dependency_links.txt writing RouToolPa.egg-info/PKG-INFO writing requirements to RouToolPa.egg-info/requires.txt writing top-level names to RouToolPa.egg-info/top_level.txt reading manifest file 'RouToolPa.egg-info/SOURCES.txt' writing manifest file 'RouToolPa.egg-info/SOURCES.txt' Copying RouToolPa.egg-info to build/bdist.linux-armv7l/wheel/RouToolPa-0.83-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/RouToolPa-0.83.dist-info/WHEEL creating '/tmp/pip-wheel-g3yu8wso/RouToolPa-0.83-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'RouToolPa/__init__.py' adding 'RouToolPa/Collections/General.py' adding 'RouToolPa/Collections/__init__.py' adding 'RouToolPa/Formats/AlignmentFormats.py' adding 'RouToolPa/Formats/AnnotationFormats.py' adding 'RouToolPa/Formats/VariantFormats.py' adding 'RouToolPa/Formats/__init__.py' adding 'RouToolPa/Parsers/Abstract.py' adding 'RouToolPa/Parsers/BLAST.py' adding 'RouToolPa/Parsers/BUSCO.py' adding 'RouToolPa/Parsers/Barrnap.py' adding 'RouToolPa/Parsers/CAFE.py' adding 'RouToolPa/Parsers/CCFOld.py' adding 'RouToolPa/Parsers/Coockiecutter.py' adding 'RouToolPa/Parsers/Cufflinks.py' adding 'RouToolPa/Parsers/DESeq2.py' adding 'RouToolPa/Parsers/Dovetail.py' adding 'RouToolPa/Parsers/FaCut.py' adding 'RouToolPa/Parsers/FastQC.py' adding 'RouToolPa/Parsers/GFF.py' adding 'RouToolPa/Parsers/GVF.py' adding 'RouToolPa/Parsers/General.py' adding 'RouToolPa/Parsers/HGMD.py' adding 'RouToolPa/Parsers/Haploview.py' adding 'RouToolPa/Parsers/KrATER.py' adding 'RouToolPa/Parsers/LAST.py' adding 'RouToolPa/Parsers/MultipleAlignment.py' adding 'RouToolPa/Parsers/PAML.py' adding 'RouToolPa/Parsers/PLINK.py' adding 'RouToolPa/Parsers/Primer3.py' adding 'RouToolPa/Parsers/R.py' adding 'RouToolPa/Parsers/SNPeff.py' adding 'RouToolPa/Parsers/Sequence.py' adding 'RouToolPa/Parsers/TRF.py' adding 'RouToolPa/Parsers/Trimmomatic.py' adding 'RouToolPa/Parsers/VCF.py' adding 'RouToolPa/Parsers/VCFOld.py' adding 'RouToolPa/Parsers/__init__.py' adding 'RouToolPa/Routines/Alignment.py' adding 'RouToolPa/Routines/Annotations.py' adding 'RouToolPa/Routines/Drawing.py' adding 'RouToolPa/Routines/EggNOG.py' adding 'RouToolPa/Routines/Ensembl.py' adding 'RouToolPa/Routines/Evolution.py' adding 'RouToolPa/Routines/Expression.py' adding 'RouToolPa/Routines/Fastq.py' adding 'RouToolPa/Routines/File.py' adding 'RouToolPa/Routines/GO.py' adding 'RouToolPa/Routines/Math.py' adding 'RouToolPa/Routines/Matplotlib.py' adding 'RouToolPa/Routines/MtDNA.py' adding 'RouToolPa/Routines/MultipleAlignment.py' adding 'RouToolPa/Routines/NCBI.py' adding 'RouToolPa/Routines/Pacbio.py' adding 'RouToolPa/Routines/Phylogenetics.py' adding 'RouToolPa/Routines/Primer.py' adding 'RouToolPa/Routines/Project.py' adding 'RouToolPa/Routines/Sequence.py' adding 'RouToolPa/Routines/SequenceCluster.py' adding 'RouToolPa/Routines/Tree.py' adding 'RouToolPa/Routines/TreeFam.py' adding 'RouToolPa/Routines/VCF.py' adding 'RouToolPa/Routines/__init__.py' adding 'RouToolPa/Tools/Abstract.py' adding 'RouToolPa/Tools/AssemblyTools.py' adding 'RouToolPa/Tools/Picard.py' adding 'RouToolPa/Tools/RepeatSearchTools.py' adding 'RouToolPa/Tools/TVC.py' adding 'RouToolPa/Tools/__init__.py' adding 'RouToolPa/Tools/AIndex/AIndex.py' adding 'RouToolPa/Tools/AIndex/__init__.py' adding 'RouToolPa/Tools/Alignment/BLAT.py' adding 'RouToolPa/Tools/Alignment/BWA.py' adding 'RouToolPa/Tools/Alignment/Bowtie2.py' adding 'RouToolPa/Tools/Alignment/GEM.py' adding 'RouToolPa/Tools/Alignment/LongRanger.py' adding 'RouToolPa/Tools/Alignment/Novoalign.py' adding 'RouToolPa/Tools/Alignment/STAR.py' adding 'RouToolPa/Tools/Alignment/TMAP.py' adding 'RouToolPa/Tools/Alignment/Tophat.py' adding 'RouToolPa/Tools/Alignment/__init__.py' adding 'RouToolPa/Tools/Annotation/AUGUSTUS.py' adding 'RouToolPa/Tools/Annotation/BUSCO.py' adding 'RouToolPa/Tools/Annotation/Barrnap.py' adding 'RouToolPa/Tools/Annotation/Emapper.py' adding 'RouToolPa/Tools/Annotation/Exonerate.py' adding 'RouToolPa/Tools/Annotation/GlimerHMM.py' adding 'RouToolPa/Tools/Annotation/SNPeff.py' adding 'RouToolPa/Tools/Annotation/TransDecoder.py' adding 'RouToolPa/Tools/Annotation/VEP.py' adding 'RouToolPa/Tools/Annotation/__init__.py' adding 'RouToolPa/Tools/Assemblers/BionanoSolve.py' adding 'RouToolPa/Tools/Assemblers/DISCOVAR.py' adding 'RouToolPa/Tools/Assemblers/Fermi.py' adding 'RouToolPa/Tools/Assemblers/MaSuRCA.py' adding 'RouToolPa/Tools/Assemblers/PEAR.py' adding 'RouToolPa/Tools/Assemblers/Platanus.py' adding 'RouToolPa/Tools/Assemblers/Quast.py' adding 'RouToolPa/Tools/Assemblers/Spades.py' adding 'RouToolPa/Tools/Assemblers/Supernova.py' adding 'RouToolPa/Tools/Assemblers/__init__.py' adding 'RouToolPa/Tools/BLAST/BLAST.py' adding 'RouToolPa/Tools/BLAST/BLASTPlus.py' adding 'RouToolPa/Tools/BLAST/__init__.py' adding 'RouToolPa/Tools/Bedtools/BamToFastq.py' adding 'RouToolPa/Tools/Bedtools/Flank.py' adding 'RouToolPa/Tools/Bedtools/GenomeCov.py' adding 'RouToolPa/Tools/Bedtools/GetFasta.py' adding 'RouToolPa/Tools/Bedtools/Intersect.py' adding 'RouToolPa/Tools/Bedtools/MaskFasta.py' adding 'RouToolPa/Tools/Bedtools/__init__.py' adding 'RouToolPa/Tools/BioFormats/BioConvert.py' adding 'RouToolPa/Tools/BioFormats/__init__.py' adding 'RouToolPa/Tools/Clustering/CDHit.py' adding 'RouToolPa/Tools/Clustering/__init__.py' adding 'RouToolPa/Tools/EMPHF/EMPHF.py' adding 'RouToolPa/Tools/EMPHF/__init__.py' adding 'RouToolPa/Tools/Evolution/__init__.py' adding 'RouToolPa/Tools/Evolution/PAML/Codeml.py' adding 'RouToolPa/Tools/Evolution/PAML/MCMCTree.py' adding 'RouToolPa/Tools/Evolution/PAML/__init__.py' adding 'RouToolPa/Tools/Expression/Cufflinks.py' adding 'RouToolPa/Tools/Expression/HTSeq.py' adding 'RouToolPa/Tools/Expression/Subread.py' adding 'RouToolPa/Tools/Expression/__init__.py' adding 'RouToolPa/Tools/Filter/Adapters.py' adding 'RouToolPa/Tools/Filter/Clumpify.py' adding 'RouToolPa/Tools/Filter/Cookiecutter.py' adding 'RouToolPa/Tools/Filter/Cutadapt.py' adding 'RouToolPa/Tools/Filter/FaCut.py' adding 'RouToolPa/Tools/Filter/FastQC.py' adding 'RouToolPa/Tools/Filter/NextClip.py' adding 'RouToolPa/Tools/Filter/TrimGalore.py' adding 'RouToolPa/Tools/Filter/Trimmomatic.py' adding 'RouToolPa/Tools/Filter/__init__.py' adding 'RouToolPa/Tools/GATK/Abstract.py' adding 'RouToolPa/Tools/GATK/AnalyzeCovariates.py' adding 'RouToolPa/Tools/GATK/ApplyRecalibration.py' adding 'RouToolPa/Tools/GATK/BaseRecalibrator.py' adding 'RouToolPa/Tools/GATK/CatVariants.py' adding 'RouToolPa/Tools/GATK/CombineVariants.py' adding 'RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py' adding 'RouToolPa/Tools/GATK/GenotypeGVCFs.py' adding 'RouToolPa/Tools/GATK/HaplotypeCaller.py' adding 'RouToolPa/Tools/GATK/IndelRealigner.py' adding 'RouToolPa/Tools/GATK/PrintReads.py' adding 'RouToolPa/Tools/GATK/RealignerTargetCreator.py' adding 'RouToolPa/Tools/GATK/SelectVariants.py' adding 'RouToolPa/Tools/GATK/UnifiedGenotyper.py' adding 'RouToolPa/Tools/GATK/ValidateVariants.py' adding 'RouToolPa/Tools/GATK/VariantFiltration.py' adding 'RouToolPa/Tools/GATK/VariantRecalibrator.py' adding 'RouToolPa/Tools/GATK/__init__.py' adding 'RouToolPa/Tools/GATK4/Abstract.py' adding 'RouToolPa/Tools/GATK4/AnalyzeCovariates4.py' adding 'RouToolPa/Tools/GATK4/BaseRecalibrator4.py' adding 'RouToolPa/Tools/GATK4/CombineGVCFs4.py' adding 'RouToolPa/Tools/GATK4/CombineVariants4.py' adding 'RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py' adding 'RouToolPa/Tools/GATK4/GenomicsDBImport4.py' adding 'RouToolPa/Tools/GATK4/GenotypeGVCFs4.py' adding 'RouToolPa/Tools/GATK4/HaplotypeCaller4.py' adding 'RouToolPa/Tools/GATK4/SelectVariants4.py' adding 'RouToolPa/Tools/GATK4/SortVcf4.py' adding 'RouToolPa/Tools/GATK4/UnifiedGenotyper.py' adding 'RouToolPa/Tools/GATK4/ValidateVariants4.py' adding 'RouToolPa/Tools/GATK4/VariantFiltration4.py' adding 'RouToolPa/Tools/GATK4/__init__.py' adding 'RouToolPa/Tools/GapClosers/GapFiller.py' adding 'RouToolPa/Tools/GapClosers/Sealer.py' adding 'RouToolPa/Tools/GapClosers/__init__.py' adding 'RouToolPa/Tools/HMMER/HMMER3.py' adding 'RouToolPa/Tools/HMMER/__init__.py' adding 'RouToolPa/Tools/ImageMagick/Convert.py' adding 'RouToolPa/Tools/ImageMagick/__init__.py' adding 'RouToolPa/Tools/Kmers/GenomeTester4.py' adding 'RouToolPa/Tools/Kmers/Jellyfish.py' adding 'RouToolPa/Tools/Kmers/__init__.py' adding 'RouToolPa/Tools/LinuxTools/CGAS.py' adding 'RouToolPa/Tools/LinuxTools/Download.py' adding 'RouToolPa/Tools/LinuxTools/Valgrind.py' adding 'RouToolPa/Tools/LinuxTools/__init__.py' adding 'RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py' adding 'RouToolPa/Tools/MultipleAlignment/MAFFT.py' adding 'RouToolPa/Tools/MultipleAlignment/PRANK.py' adding 'RouToolPa/Tools/MultipleAlignment/SWAMP.py' adding 'RouToolPa/Tools/MultipleAlignment/__init__.py' adding 'RouToolPa/Tools/PacBio/SMRTLink4.py' adding 'RouToolPa/Tools/PacBio/__init__.py' adding 'RouToolPa/Tools/Phylogenetics/ExaBayes.py' adding 'RouToolPa/Tools/Phylogenetics/ExaML.py' adding 'RouToolPa/Tools/Phylogenetics/Gblocks.py' adding 'RouToolPa/Tools/Phylogenetics/MrBayes.py' adding 'RouToolPa/Tools/Phylogenetics/PartitionFinder.py' adding 'RouToolPa/Tools/Phylogenetics/RAxML.py' adding 'RouToolPa/Tools/Phylogenetics/__init__.py' adding 'RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py' adding 'RouToolPa/Tools/Picard/CreateSequenceDictionary.py' adding 'RouToolPa/Tools/Picard/MarkDuplicates.py' adding 'RouToolPa/Tools/Picard/SortVcf.py' adding 'RouToolPa/Tools/Picard/__init__.py' adding 'RouToolPa/Tools/Population/PLINK.py' adding 'RouToolPa/Tools/Population/PSMC.py' adding 'RouToolPa/Tools/Population/__init__.py' adding 'RouToolPa/Tools/Primers/Primer3.py' adding 'RouToolPa/Tools/Primers/__init__.py' adding 'RouToolPa/Tools/RepeatMasking/RepeatMasker.py' adding 'RouToolPa/Tools/RepeatMasking/RepeatModeler.py' adding 'RouToolPa/Tools/RepeatMasking/RepeatScout.py' adding 'RouToolPa/Tools/RepeatMasking/TRF.py' adding 'RouToolPa/Tools/RepeatMasking/__init__.py' adding 'RouToolPa/Tools/SRAToolkit/FastqDump.py' adding 'RouToolPa/Tools/SRAToolkit/__init__.py' adding 'RouToolPa/Tools/Samtools/Samtools.py' adding 'RouToolPa/Tools/Samtools/__init__.py' adding 'RouToolPa/Tools/Scaffolders/LRNAScaffolder.py' adding 'RouToolPa/Tools/Scaffolders/SSPACE.py' adding 'RouToolPa/Tools/Scaffolders/__init__.py' adding 'RouToolPa/Tools/Stirka/Trimmer.py' adding 'RouToolPa/Tools/Stirka/__init__.py' adding 'RouToolPa/Tools/WGA/LAST.py' adding 'RouToolPa/Tools/WGA/__init__.py' adding 'RouToolPa-0.83.dist-info/METADATA' adding 'RouToolPa-0.83.dist-info/WHEEL' adding 'RouToolPa-0.83.dist-info/top_level.txt' adding 'RouToolPa-0.83.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for RouToolPa: finished with status 'done' Stored in directory: /tmp/tmpaevwx3u2 Successfully built RouToolPa Cleaning up... Removing source in /tmp/pip-wheel-j5x66vbu/RouToolPa Removed build tracker '/tmp/pip-req-tracker-5c111rtj'