2019-11-23T01:02:03 Created temporary directory: /tmp/pip-ephem-wheel-cache-_h5nywea
2019-11-23T01:02:03 Created temporary directory: /tmp/pip-req-tracker-lhh9oiz1
2019-11-23T01:02:03 Created requirements tracker '/tmp/pip-req-tracker-lhh9oiz1'
2019-11-23T01:02:03 Created temporary directory: /tmp/pip-wheel-0l72xjhc
2019-11-23T01:02:03 Collecting topopy==1.0.0
2019-11-23T01:02:03   1 location(s) to search for versions of topopy:
2019-11-23T01:02:03   * https://pypi.org/simple/topopy/
2019-11-23T01:02:03   Getting page https://pypi.org/simple/topopy/
2019-11-23T01:02:03   Analyzing links from page https://pypi.org/simple/topopy/
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/34/a5/ed5bc6d6e56350d7caf0e48706ddc668e0645968d9631ae2bd0a1965a6ac/topopy-0.0.1.tar.gz#sha256=45f9bebd36ecf85839ae704a6e67691a72ee4adb1e2924bcb8357cd9ab3733fe (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.0.1
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/f1/6a/027730be08c9913a9babd8d7c8853fed6f2be0c6fb52de6e21fee5a73018/topopy-0.0.2.tar.gz#sha256=30d2b55b27454fea3becf535b443bbad52f6025d3dc1a6bfc1b6ef761282600c (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.0.2
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/ad/e9/b11e375eaf5fa63cf9c3bc634355f36d85aeaea5b0e94ff2f42da91c429f/topopy-0.0.3.tar.gz#sha256=35f40dab5115298413a06af31ada0d2967d0a43a94505685fb7cc731086b2f98 (from https://pypi.org/simple/topopy/), version: 0.0.3
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/37/89/0e5eadb0dba1b9db78904035de2d49739e49a107ea0be5a1a938ee6b9954/topopy-0.0.4.tar.gz#sha256=d96f5944be8d88793f8828aafaec603acd2a0b2186709f587307665cc8e4912c (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.0.4
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/17/ed/7df44851ef043d8ef348ea55f036a8a944e03caee6bebfd2ed5f4d4dd8b9/topopy-0.0.5.0.tar.gz#sha256=fd60387d1eb1aab50d2e2fe540ca1befe92acc20ae12e57444f28fb4c1cc38fe (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.0.5.0
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/94/fb/69a27d2a821bb4f5d005bac36b2aef5ca2678c7062ffec71117e25977c05/topopy-0.0.6.tar.gz#sha256=73d5fc90cc0f2885754c4b93bafbe3c287fe45aab8c785d61a151e5ce6b2bb5a (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.0.6
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/06/ec/214ff072d809d43e5ea23006491dafc46c3d39a170f64767f3d6c9349136/topopy-0.1.0.tar.gz#sha256=c80a7dbeb2e8f6c31a91efdcccdd30178dc829ccf0ea154d2c7f04a926521299 (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.1.0
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/78/7d/9691d6c2b3313d7a1321a76df3954243685a076c7d78b32f1d6ca123472f/topopy-0.1.1.tar.gz#sha256=27ca872dc4dc3f8515ce4837ac6d7786cad245003db3309020b6e5543f965b97 (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 0.1.1
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/8f/8d/7674fc57eea376c6404743a80253e5e48830df907369580108cb94470fd3/topopy-1.0.0.dev4639326.tar.gz#sha256=af00771e966d88f5d79332b3d41b0715e03ab737e6e3a5d9908bea266f6bba37 (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 1.0.0.dev4639326
2019-11-23T01:02:04     Found link https://files.pythonhosted.org/packages/63/de/d8d110f9e32e56498c5a6a14029b9db9fe6188b9cd5a20c6e35b75935c8c/topopy-1.0.0.tar.gz#sha256=cc71de37efd943a20467bc037f128df6569483d4567f375c3801d30cc5b4a83d (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4), version: 1.0.0
2019-11-23T01:02:04   Using version 1.0.0 (newest of versions: 1.0.0)
2019-11-23T01:02:04   Created temporary directory: /tmp/pip-unpack-ylx_06bj
2019-11-23T01:02:04   Downloading https://files.pythonhosted.org/packages/63/de/d8d110f9e32e56498c5a6a14029b9db9fe6188b9cd5a20c6e35b75935c8c/topopy-1.0.0.tar.gz (118kB)
2019-11-23T01:02:04   Downloading from URL https://files.pythonhosted.org/packages/63/de/d8d110f9e32e56498c5a6a14029b9db9fe6188b9cd5a20c6e35b75935c8c/topopy-1.0.0.tar.gz#sha256=cc71de37efd943a20467bc037f128df6569483d4567f375c3801d30cc5b4a83d (from https://pypi.org/simple/topopy/) (requires-python:>=2.7, <4)
2019-11-23T01:02:04   Added topopy==1.0.0 from https://files.pythonhosted.org/packages/63/de/d8d110f9e32e56498c5a6a14029b9db9fe6188b9cd5a20c6e35b75935c8c/topopy-1.0.0.tar.gz#sha256=cc71de37efd943a20467bc037f128df6569483d4567f375c3801d30cc5b4a83d to build tracker '/tmp/pip-req-tracker-lhh9oiz1'
2019-11-23T01:02:04     Running setup.py (path:/tmp/pip-wheel-0l72xjhc/topopy/setup.py) egg_info for package topopy
2019-11-23T01:02:04     Running command python setup.py egg_info
2019-11-23T01:02:05     running egg_info
2019-11-23T01:02:05     creating pip-egg-info/topopy.egg-info
2019-11-23T01:02:05     writing pip-egg-info/topopy.egg-info/PKG-INFO
2019-11-23T01:02:05     writing dependency_links to pip-egg-info/topopy.egg-info/dependency_links.txt
2019-11-23T01:02:05     writing requirements to pip-egg-info/topopy.egg-info/requires.txt
2019-11-23T01:02:05     writing top-level names to pip-egg-info/topopy.egg-info/top_level.txt
2019-11-23T01:02:05     writing manifest file 'pip-egg-info/topopy.egg-info/SOURCES.txt'
2019-11-23T01:02:06     reading manifest file 'pip-egg-info/topopy.egg-info/SOURCES.txt'
2019-11-23T01:02:06     reading manifest template 'MANIFEST.in'
2019-11-23T01:02:06     writing manifest file 'pip-egg-info/topopy.egg-info/SOURCES.txt'
2019-11-23T01:02:06   Source in /tmp/pip-wheel-0l72xjhc/topopy has version 1.0.0, which satisfies requirement topopy==1.0.0 from https://files.pythonhosted.org/packages/63/de/d8d110f9e32e56498c5a6a14029b9db9fe6188b9cd5a20c6e35b75935c8c/topopy-1.0.0.tar.gz#sha256=cc71de37efd943a20467bc037f128df6569483d4567f375c3801d30cc5b4a83d
2019-11-23T01:02:06   Removed topopy==1.0.0 from https://files.pythonhosted.org/packages/63/de/d8d110f9e32e56498c5a6a14029b9db9fe6188b9cd5a20c6e35b75935c8c/topopy-1.0.0.tar.gz#sha256=cc71de37efd943a20467bc037f128df6569483d4567f375c3801d30cc5b4a83d from build tracker '/tmp/pip-req-tracker-lhh9oiz1'
2019-11-23T01:02:06 Building wheels for collected packages: topopy
2019-11-23T01:02:06   Created temporary directory: /tmp/pip-wheel-umbx2br8
2019-11-23T01:02:06   Building wheel for topopy (setup.py): started
2019-11-23T01:02:06   Destination directory: /tmp/pip-wheel-umbx2br8
2019-11-23T01:02:06   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-0l72xjhc/topopy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-umbx2br8
2019-11-23T01:02:08   running bdist_wheel
2019-11-23T01:02:08   running build
2019-11-23T01:02:08   running build_py
2019-11-23T01:02:08   creating build
2019-11-23T01:02:08   creating build/lib.linux-armv7l-3.7
2019-11-23T01:02:08   creating build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/MergeTree.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/TopologicalObject.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/topology.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/MorseSmaleComplex.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/__init__.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/ContourTree.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   copying topopy/MorseComplex.py -> build/lib.linux-armv7l-3.7/topopy
2019-11-23T01:02:08   running build_ext
2019-11-23T01:02:08   building '_topology' extension
2019-11-23T01:02:08   creating build/temp.linux-armv7l-3.7
2019-11-23T01:02:08   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c UnionFind.cpp -o build/temp.linux-armv7l-3.7/UnionFind.o -O3 -march=native
2019-11-23T01:02:12   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MergeTree.cpp -o build/temp.linux-armv7l-3.7/MergeTree.o -O3 -march=native
2019-11-23T01:02:34   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c MorseComplex.cpp -o build/temp.linux-armv7l-3.7/MorseComplex.o -O3 -march=native
2019-11-23T01:02:43   In file included from /usr/include/c++/8/bits/stl_algo.h:61,
2019-11-23T01:02:43                    from /usr/include/c++/8/algorithm:62,
2019-11-23T01:02:43                    from MorseComplex.cpp:5:
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43        __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
2019-11-23T01:02:43        ^~~~~~~~~~~~~
2019-11-23T01:02:43   In file included from /usr/include/c++/8/algorithm:62,
2019-11-23T01:02:43                    from MorseComplex.cpp:5:
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43        __insertion_sort(_RandomAccessIterator __first,
2019-11-23T01:02:43        ^~~~~~~~~~~~~~~~
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43        __introsort_loop(_RandomAccessIterator __first,
2019-11-23T01:02:43        ^~~~~~~~~~~~~~~~
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43   /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:43       std::__introsort_loop(__cut, __last, __depth_limit, __comp);
2019-11-23T01:02:43       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:02:44   In file included from /usr/include/c++/8/map:60,
2019-11-23T01:02:44                    from MorseComplex.h:4,
2019-11-23T01:02:44                    from MorseComplex.cpp:1:
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, Merge<double> >; _KeyOfValue = std::_Select1st<std::pair<const int, Merge<double> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, Merge<double> > >]’:
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:44          _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2019-11-23T01:02:44          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::pair<int, int>&>, std::tuple<>}; _Key = std::pair<int, int>; _Val = std::pair<const std::pair<int, int>, std::pair<double, int> >; _KeyOfValue = std::_Select1st<std::pair<const std::pair<int, int>, std::pair<double, int> > >; _Compare = std::less<std::pair<int, int> >; _Alloc = std::allocator<std::pair<const std::pair<int, int>, std::pair<double, int> > >]’:
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<int, int>, std::pair<const std::pair<int, int>, std::pair<double, int> >, std::_Select1st<std::pair<const std::pair<int, int>, std::pair<double, int> > >, std::less<std::pair<int, int> >, std::allocator<std::pair<const std::pair<int, int>, std::pair<double, int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::pair<int, int>, std::pair<double, int> > >’} changed in GCC 7.1
2019-11-23T01:02:44   In file included from /usr/include/c++/8/map:61,
2019-11-23T01:02:44                    from MorseComplex.h:4,
2019-11-23T01:02:44                    from MorseComplex.cpp:1:
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_map.h: In member function ‘int MorseComplex<T>::MaxLabel(int, T) [with T = double]’:
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:44       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:44   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:44       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:45   /usr/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = Merge<double>; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, Merge<double> > >]’:
2019-11-23T01:02:45   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:45       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:45   /usr/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair<int, int>; _Tp = std::pair<double, int>; _Compare = std::less<std::pair<int, int> >; _Alloc = std::allocator<std::pair<const std::pair<int, int>, std::pair<double, int> > >]’:
2019-11-23T01:02:45   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<int, int>, std::pair<const std::pair<int, int>, std::pair<double, int> >, std::_Select1st<std::pair<const std::pair<int, int>, std::pair<double, int> > >, std::less<std::pair<int, int> >, std::allocator<std::pair<const std::pair<int, int>, std::pair<double, int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::pair<int, int>, std::pair<double, int> > >’} changed in GCC 7.1
2019-11-23T01:02:45       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:46   In file included from /usr/include/c++/8/algorithm:62,
2019-11-23T01:02:46                    from MorseComplex.cpp:5:
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_algo.h: In member function ‘std::vector<T> MorseComplex<T>::SortedPersistences() [with T = double]’:
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:46       std::__introsort_loop(__first, __last,
2019-11-23T01:02:46       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2019-11-23T01:02:46        std::__lg(__last - __first) * 2,
2019-11-23T01:02:46        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:02:46        __comp);
2019-11-23T01:02:46        ~~~~~~~
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:46       std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
2019-11-23T01:02:46       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:02:46     std::__insertion_sort(__first, __last, __comp);
2019-11-23T01:02:46     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:02:46   In file included from /usr/include/c++/8/map:61,
2019-11-23T01:02:46                    from MorseComplex.h:4,
2019-11-23T01:02:46                    from MorseComplex.cpp:1:
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_map.h: In member function ‘std::map<int, std::vector<int> > MorseComplex<T>::GetPartitions(T) [with T = double]’:
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:46       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:46       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:46   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:46       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:49   In file included from /usr/include/c++/8/map:60,
2019-11-23T01:02:49                    from MorseComplex.h:4,
2019-11-23T01:02:49                    from MorseComplex.cpp:1:
2019-11-23T01:02:49   /usr/include/c++/8/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::pair<double, int>; _Val = std::pair<const std::pair<double, int>, std::pair<int, int> >; _KeyOfValue = std::_Select1st<std::pair<const std::pair<double, int>, std::pair<int, int> > >; _Compare = std::less<std::pair<double, int> >; _Alloc = std::allocator<std::pair<const std::pair<double, int>, std::pair<int, int> > >]’:
2019-11-23T01:02:49   /usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<double, int>, std::pair<const std::pair<double, int>, std::pair<int, int> >, std::_Select1st<std::pair<const std::pair<double, int>, std::pair<int, int> > >, std::less<std::pair<double, int> >, std::allocator<std::pair<const std::pair<double, int>, std::pair<int, int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::pair<double, int>, std::pair<int, int> > >’} changed in GCC 7.1
2019-11-23T01:02:49        _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
2019-11-23T01:02:49        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:02:50   In file included from /usr/include/c++/8/map:61,
2019-11-23T01:02:50                    from MorseComplex.h:4,
2019-11-23T01:02:50                    from MorseComplex.cpp:1:
2019-11-23T01:02:50   /usr/include/c++/8/bits/stl_map.h: In member function ‘void MorseComplex<T>::ComputeMaximaPersistence() [with T = double]’:
2019-11-23T01:02:50   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:50       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:50   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:50       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:50   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::pair<int, int>, std::pair<const std::pair<int, int>, std::pair<double, int> >, std::_Select1st<std::pair<const std::pair<int, int>, std::pair<double, int> > >, std::less<std::pair<int, int> >, std::allocator<std::pair<const std::pair<int, int>, std::pair<double, int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::pair<int, int>, std::pair<double, int> > >’} changed in GCC 7.1
2019-11-23T01:02:50       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:50   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:50       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:02:50   /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, Merge<double> >, std::_Select1st<std::pair<const int, Merge<double> > >, std::less<int>, std::allocator<std::pair<const int, Merge<double> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, Merge<double> > >’} changed in GCC 7.1
2019-11-23T01:02:50       __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
2019-11-23T01:03:00   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c utils.cpp -o build/temp.linux-armv7l-3.7/utils.o -O3 -march=native
2019-11-23T01:03:02   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c topology_wrap.cpp -o build/temp.linux-armv7l-3.7/topology_wrap.o -O3 -march=native
2019-11-23T01:03:10   topology_wrap.cpp: In instantiation of ‘static Type swig::traits_as<Type, swig::pointer_category>::as(PyObject*, bool) [with Type = std::pair<int, int>; PyObject = _object]’:
2019-11-23T01:03:10   topology_wrap.cpp:4228:64:   required from ‘Type swig::as(PyObject*, bool) [with Type = std::pair<int, int>; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4795:20:   required from ‘swig::SwigPySequence_Ref<T>::operator T() const [with T = std::pair<int, int>]’
2019-11-23T01:03:10   topology_wrap.cpp:5663:25:   required from ‘void swig::assign(const SwigPySeq&, std::set<T>*) [with SwigPySeq = swig::SwigPySequence_Cont<std::pair<int, int> >; T = std::pair<int, int>]’
2019-11-23T01:03:10   topology_wrap.cpp:5065:12:   required from ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::set<std::pair<int, int> >; T = std::pair<int, int>; PyObject = _object; swig::traits_asptr_stdseq<Seq, T>::sequence = std::set<std::pair<int, int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:5670:49:   required from ‘static int swig::traits_asptr<std::set<T> >::asptr(PyObject*, std::set<T>**) [with T = std::pair<int, int>; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4120:37:   required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::set<std::pair<int, int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:22474:34:   required from here
2019-11-23T01:03:10   topology_wrap.cpp:4203:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::pair<int, int>’ with no trivial copy-assignment; use assignment instead [-Wclass-memaccess]
2019-11-23T01:03:10     memset(v_def,0,sizeof(Type));
2019-11-23T01:03:10     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:10   In file included from /usr/include/c++/8/bits/stl_algobase.h:64,
2019-11-23T01:03:10                    from /usr/include/c++/8/bits/char_traits.h:39,
2019-11-23T01:03:10                    from /usr/include/c++/8/string:40,
2019-11-23T01:03:10                    from /usr/include/c++/8/stdexcept:39,
2019-11-23T01:03:10                    from topology_wrap.cpp:3090:
2019-11-23T01:03:10   /usr/include/c++/8/bits/stl_pair.h:208:12: note: ‘struct std::pair<int, int>’ declared here
2019-11-23T01:03:10        struct pair
2019-11-23T01:03:10               ^~~~
2019-11-23T01:03:10   topology_wrap.cpp: In instantiation of ‘static Type swig::traits_as<Type, swig::pointer_category>::as(PyObject*, bool) [with Type = std::pair<std::__cxx11::basic_string<char>, std::vector<int> >; PyObject = _object]’:
2019-11-23T01:03:10   topology_wrap.cpp:4228:64:   required from ‘Type swig::as(PyObject*, bool) [with Type = std::pair<std::__cxx11::basic_string<char>, std::vector<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4795:20:   required from ‘swig::SwigPySequence_Ref<T>::operator T() const [with T = std::pair<std::__cxx11::basic_string<char>, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4855:14:   required from ‘swig::SwigPySequence_ArrowProxy<T> swig::SwigPySequence_InputIterator<T, Reference>::operator->() const [with T = std::pair<std::__cxx11::basic_string<char>, std::vector<int> >; Reference = const swig::SwigPySequence_Ref<std::pair<std::__cxx11::basic_string<char>, std::vector<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5965:25:   required from ‘void swig::assign(const SwigPySeq&, std::map<K, T, Compare, Alloc>*) [with SwigPySeq = swig::SwigPySequence_Cont<std::pair<std::__cxx11::basic_string<char>, std::vector<int> > >; K = std::__cxx11::basic_string<char>; T = std::vector<int>; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5065:12:   required from ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::map<std::__cxx11::basic_string<char>, std::vector<int>, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<int> > > >; T = std::pair<std::__cxx11::basic_string<char>, std::vector<int> >; PyObject = _object; swig::traits_asptr_stdseq<Seq, T>::sequence = std::map<std::__cxx11::basic_string<char>, std::vector<int>, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<int> > > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5981:64:   required from ‘static int swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::asptr(PyObject*, swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type**) [with K = std::__cxx11::basic_string<char>; T = std::vector<int>; Compare = std::less<std::__cxx11::basic_string<char> >; Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<int> > >; PyObject = _object; swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type = std::map<std::__cxx11::basic_string<char>, std::vector<int>, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<int> > > >]’
2019-11-23T01:03:10   topology_wrap.cpp:4120:37:   required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::map<std::__cxx11::basic_string<char>, std::vector<int>, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<int> > > >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:19059:222:   required from here
2019-11-23T01:03:10   topology_wrap.cpp:4203:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::pair<std::__cxx11::basic_string<char>, std::vector<int> >’ with no trivial copy-assignment; use assignment instead [-Wclass-memaccess]
2019-11-23T01:03:10     memset(v_def,0,sizeof(Type));
2019-11-23T01:03:10     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:10   In file included from /usr/include/c++/8/bits/stl_algobase.h:64,
2019-11-23T01:03:10                    from /usr/include/c++/8/bits/char_traits.h:39,
2019-11-23T01:03:10                    from /usr/include/c++/8/string:40,
2019-11-23T01:03:10                    from /usr/include/c++/8/stdexcept:39,
2019-11-23T01:03:10                    from topology_wrap.cpp:3090:
2019-11-23T01:03:10   /usr/include/c++/8/bits/stl_pair.h:208:12: note: ‘struct std::pair<std::__cxx11::basic_string<char>, std::vector<int> >’ declared here
2019-11-23T01:03:10        struct pair
2019-11-23T01:03:10               ^~~~
2019-11-23T01:03:10   topology_wrap.cpp: In instantiation of ‘static Type swig::traits_as<Type, swig::pointer_category>::as(PyObject*, bool) [with Type = std::pair<int, std::vector<int> >; PyObject = _object]’:
2019-11-23T01:03:10   topology_wrap.cpp:4228:64:   required from ‘Type swig::as(PyObject*, bool) [with Type = std::pair<int, std::vector<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4795:20:   required from ‘swig::SwigPySequence_Ref<T>::operator T() const [with T = std::pair<int, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4855:14:   required from ‘swig::SwigPySequence_ArrowProxy<T> swig::SwigPySequence_InputIterator<T, Reference>::operator->() const [with T = std::pair<int, std::vector<int> >; Reference = const swig::SwigPySequence_Ref<std::pair<int, std::vector<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5965:25:   required from ‘void swig::assign(const SwigPySeq&, std::map<K, T, Compare, Alloc>*) [with SwigPySeq = swig::SwigPySequence_Cont<std::pair<int, std::vector<int> > >; K = int; T = std::vector<int>; Compare = std::less<int>; Alloc = std::allocator<std::pair<const int, std::vector<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5065:12:   required from ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::map<int, std::vector<int> >; T = std::pair<int, std::vector<int> >; PyObject = _object; swig::traits_asptr_stdseq<Seq, T>::sequence = std::map<int, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:5981:64:   required from ‘static int swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::asptr(PyObject*, swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type**) [with K = int; T = std::vector<int>; Compare = std::less<int>; Alloc = std::allocator<std::pair<const int, std::vector<int> > >; PyObject = _object; swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type = std::map<int, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4120:37:   required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::map<int, std::vector<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:20259:198:   required from here
2019-11-23T01:03:10   topology_wrap.cpp:4203:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::pair<int, std::vector<int> >’ with no trivial copy-assignment; use assignment instead [-Wclass-memaccess]
2019-11-23T01:03:10     memset(v_def,0,sizeof(Type));
2019-11-23T01:03:10     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:10   In file included from /usr/include/c++/8/bits/stl_algobase.h:64,
2019-11-23T01:03:10                    from /usr/include/c++/8/bits/char_traits.h:39,
2019-11-23T01:03:10                    from /usr/include/c++/8/string:40,
2019-11-23T01:03:10                    from /usr/include/c++/8/stdexcept:39,
2019-11-23T01:03:10                    from topology_wrap.cpp:3090:
2019-11-23T01:03:10   /usr/include/c++/8/bits/stl_pair.h:208:12: note: ‘struct std::pair<int, std::vector<int> >’ declared here
2019-11-23T01:03:10        struct pair
2019-11-23T01:03:10               ^~~~
2019-11-23T01:03:10   topology_wrap.cpp: In instantiation of ‘static Type swig::traits_as<Type, swig::pointer_category>::as(PyObject*, bool) [with Type = std::pair<int, float>; PyObject = _object]’:
2019-11-23T01:03:10   topology_wrap.cpp:4228:64:   required from ‘Type swig::as(PyObject*, bool) [with Type = std::pair<int, float>; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4795:20:   required from ‘swig::SwigPySequence_Ref<T>::operator T() const [with T = std::pair<int, float>]’
2019-11-23T01:03:10   topology_wrap.cpp:4855:14:   required from ‘swig::SwigPySequence_ArrowProxy<T> swig::SwigPySequence_InputIterator<T, Reference>::operator->() const [with T = std::pair<int, float>; Reference = const swig::SwigPySequence_Ref<std::pair<int, float> >]’
2019-11-23T01:03:10   topology_wrap.cpp:5965:25:   required from ‘void swig::assign(const SwigPySeq&, std::map<K, T, Compare, Alloc>*) [with SwigPySeq = swig::SwigPySequence_Cont<std::pair<int, float> >; K = int; T = float; Compare = std::less<int>; Alloc = std::allocator<std::pair<const int, float> >]’
2019-11-23T01:03:10   topology_wrap.cpp:5065:12:   required from ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::map<int, float, std::less<int>, std::allocator<std::pair<const int, float> > >; T = std::pair<int, float>; PyObject = _object; swig::traits_asptr_stdseq<Seq, T>::sequence = std::map<int, float, std::less<int>, std::allocator<std::pair<const int, float> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5981:64:   required from ‘static int swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::asptr(PyObject*, swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type**) [with K = int; T = float; Compare = std::less<int>; Alloc = std::allocator<std::pair<const int, float> >; PyObject = _object; swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type = std::map<int, float, std::less<int>, std::allocator<std::pair<const int, float> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:4120:37:   required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::map<int, float, std::less<int>, std::allocator<std::pair<const int, float> > >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:21435:128:   required from here
2019-11-23T01:03:10   topology_wrap.cpp:4203:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::pair<int, float>’ with no trivial copy-assignment; use assignment instead [-Wclass-memaccess]
2019-11-23T01:03:10     memset(v_def,0,sizeof(Type));
2019-11-23T01:03:10     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:10   In file included from /usr/include/c++/8/bits/stl_algobase.h:64,
2019-11-23T01:03:10                    from /usr/include/c++/8/bits/char_traits.h:39,
2019-11-23T01:03:10                    from /usr/include/c++/8/string:40,
2019-11-23T01:03:10                    from /usr/include/c++/8/stdexcept:39,
2019-11-23T01:03:10                    from topology_wrap.cpp:3090:
2019-11-23T01:03:10   /usr/include/c++/8/bits/stl_pair.h:208:12: note: ‘struct std::pair<int, float>’ declared here
2019-11-23T01:03:10        struct pair
2019-11-23T01:03:10               ^~~~
2019-11-23T01:03:10   topology_wrap.cpp: In instantiation of ‘static Type swig::traits_as<Type, swig::pointer_category>::as(PyObject*, bool) [with Type = std::pair<int, std::set<int> >; PyObject = _object]’:
2019-11-23T01:03:10   topology_wrap.cpp:4228:64:   required from ‘Type swig::as(PyObject*, bool) [with Type = std::pair<int, std::set<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4795:20:   required from ‘swig::SwigPySequence_Ref<T>::operator T() const [with T = std::pair<int, std::set<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4855:14:   required from ‘swig::SwigPySequence_ArrowProxy<T> swig::SwigPySequence_InputIterator<T, Reference>::operator->() const [with T = std::pair<int, std::set<int> >; Reference = const swig::SwigPySequence_Ref<std::pair<int, std::set<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5965:25:   required from ‘void swig::assign(const SwigPySeq&, std::map<K, T, Compare, Alloc>*) [with SwigPySeq = swig::SwigPySequence_Cont<std::pair<int, std::set<int> > >; K = int; T = std::set<int>; Compare = std::less<int>; Alloc = std::allocator<std::pair<const int, std::set<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5065:12:   required from ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::map<int, std::set<int> >; T = std::pair<int, std::set<int> >; PyObject = _object; swig::traits_asptr_stdseq<Seq, T>::sequence = std::map<int, std::set<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:5981:64:   required from ‘static int swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::asptr(PyObject*, swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type**) [with K = int; T = std::set<int>; Compare = std::less<int>; Alloc = std::allocator<std::pair<const int, std::set<int> > >; PyObject = _object; swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type = std::map<int, std::set<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4120:37:   required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::map<int, std::set<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:23626:226:   required from here
2019-11-23T01:03:10   topology_wrap.cpp:4203:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::pair<int, std::set<int> >’ with no trivial copy-assignment; use assignment instead [-Wclass-memaccess]
2019-11-23T01:03:10     memset(v_def,0,sizeof(Type));
2019-11-23T01:03:10     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:10   In file included from /usr/include/c++/8/bits/stl_algobase.h:64,
2019-11-23T01:03:10                    from /usr/include/c++/8/bits/char_traits.h:39,
2019-11-23T01:03:10                    from /usr/include/c++/8/string:40,
2019-11-23T01:03:10                    from /usr/include/c++/8/stdexcept:39,
2019-11-23T01:03:10                    from topology_wrap.cpp:3090:
2019-11-23T01:03:10   /usr/include/c++/8/bits/stl_pair.h:208:12: note: ‘struct std::pair<int, std::set<int> >’ declared here
2019-11-23T01:03:10        struct pair
2019-11-23T01:03:10               ^~~~
2019-11-23T01:03:10   topology_wrap.cpp: In instantiation of ‘static Type swig::traits_as<Type, swig::pointer_category>::as(PyObject*, bool) [with Type = std::pair<std::pair<int, int>, std::vector<int> >; PyObject = _object]’:
2019-11-23T01:03:10   topology_wrap.cpp:4228:64:   required from ‘Type swig::as(PyObject*, bool) [with Type = std::pair<std::pair<int, int>, std::vector<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:4795:20:   required from ‘swig::SwigPySequence_Ref<T>::operator T() const [with T = std::pair<std::pair<int, int>, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4855:14:   required from ‘swig::SwigPySequence_ArrowProxy<T> swig::SwigPySequence_InputIterator<T, Reference>::operator->() const [with T = std::pair<std::pair<int, int>, std::vector<int> >; Reference = const swig::SwigPySequence_Ref<std::pair<std::pair<int, int>, std::vector<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5965:25:   required from ‘void swig::assign(const SwigPySeq&, std::map<K, T, Compare, Alloc>*) [with SwigPySeq = swig::SwigPySequence_Cont<std::pair<std::pair<int, int>, std::vector<int> > >; K = std::pair<int, int>; T = std::vector<int>; Compare = std::less<std::pair<int, int> >; Alloc = std::allocator<std::pair<const std::pair<int, int>, std::vector<int> > >]’
2019-11-23T01:03:10   topology_wrap.cpp:5065:12:   required from ‘static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::map<std::pair<int, int>, std::vector<int> >; T = std::pair<std::pair<int, int>, std::vector<int> >; PyObject = _object; swig::traits_asptr_stdseq<Seq, T>::sequence = std::map<std::pair<int, int>, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:5981:64:   required from ‘static int swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::asptr(PyObject*, swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type**) [with K = std::pair<int, int>; T = std::vector<int>; Compare = std::less<std::pair<int, int> >; Alloc = std::allocator<std::pair<const std::pair<int, int>, std::vector<int> > >; PyObject = _object; swig::traits_asptr<std::map<_Key, _Tp, _Compare, _Alloc> >::map_type = std::map<std::pair<int, int>, std::vector<int> >]’
2019-11-23T01:03:10   topology_wrap.cpp:4120:37:   required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::map<std::pair<int, int>, std::vector<int> >; PyObject = _object]’
2019-11-23T01:03:10   topology_wrap.cpp:24813:249:   required from here
2019-11-23T01:03:10   topology_wrap.cpp:4203:8: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::pair<std::pair<int, int>, std::vector<int> >’ with no trivial copy-assignment; use assignment instead [-Wclass-memaccess]
2019-11-23T01:03:10     memset(v_def,0,sizeof(Type));
2019-11-23T01:03:10     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:10   In file included from /usr/include/c++/8/bits/stl_algobase.h:64,
2019-11-23T01:03:10                    from /usr/include/c++/8/bits/char_traits.h:39,
2019-11-23T01:03:10                    from /usr/include/c++/8/string:40,
2019-11-23T01:03:10                    from /usr/include/c++/8/stdexcept:39,
2019-11-23T01:03:10                    from topology_wrap.cpp:3090:
2019-11-23T01:03:10   /usr/include/c++/8/bits/stl_pair.h:208:12: note: ‘struct std::pair<std::pair<int, int>, std::vector<int> >’ declared here
2019-11-23T01:03:10        struct pair
2019-11-23T01:03:10               ^~~~
2019-11-23T01:03:32   In file included from /usr/include/c++/8/vector:69,
2019-11-23T01:03:32                    from topology_wrap.cpp:3668:
2019-11-23T01:03:32   /usr/include/c++/8/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]’:
2019-11-23T01:03:32   /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’} changed in GCC 7.1
2019-11-23T01:03:32          vector<_Tp, _Alloc>::
2019-11-23T01:03:32          ^~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:32   /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:32   /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:54   In file included from /usr/include/c++/8/vector:64,
2019-11-23T01:03:54                    from topology_wrap.cpp:3668:
2019-11-23T01:03:54   /usr/include/c++/8/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double, std::allocator<double> >; Difference = int; InputSeq = std::vector<double, std::allocator<double> >]’:
2019-11-23T01:03:54   /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’} changed in GCC 7.1
2019-11-23T01:03:54       _M_range_insert(__pos, __first, __last,
2019-11-23T01:03:54       ^~~~~~~~~~~~~~~
2019-11-23T01:03:54   /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:55   /usr/include/c++/8/bits/stl_vector.h: In function ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double, std::allocator<double> >; Difference = int; InputSeq = std::vector<double, std::allocator<double> >]’:
2019-11-23T01:03:55   /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’} changed in GCC 7.1
2019-11-23T01:03:55       _M_range_insert(__pos, __first, __last,
2019-11-23T01:03:55       ^~~~~~~~~~~~~~~
2019-11-23T01:03:55   /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:57   In file included from /usr/include/c++/8/vector:69,
2019-11-23T01:03:57                    from topology_wrap.cpp:3668:
2019-11-23T01:03:57   /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2019-11-23T01:03:57   /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’} changed in GCC 7.1
2019-11-23T01:03:57          vector<_Tp, _Alloc>::
2019-11-23T01:03:57          ^~~~~~~~~~~~~~~~~~~
2019-11-23T01:03:57   In file included from /usr/include/c++/8/vector:64,
2019-11-23T01:03:57                    from topology_wrap.cpp:3668:
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h: In function ‘PyObject* _wrap_vectorDouble_append(PyObject*, PyObject*)’:
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:57       _M_realloc_insert(end(), __x);
2019-11-23T01:03:57       ^~~~~~~~~~~~~~~~~
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h: In function ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector<double, std::allocator<double> >; Difference = int]’:
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:57       _M_realloc_insert(end(), __x);
2019-11-23T01:03:57       ^~~~~~~~~~~~~~~~~
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:57       _M_realloc_insert(end(), __x);
2019-11-23T01:03:57       ^~~~~~~~~~~~~~~~~
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h: In function ‘PyObject* _wrap_vectorDouble_push_back(PyObject*, PyObject*)’:
2019-11-23T01:03:57   /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:03:57       _M_realloc_insert(end(), __x);
2019-11-23T01:03:57       ^~~~~~~~~~~~~~~~~
2019-11-23T01:03:57   In file included from /usr/include/c++/8/vector:69,
2019-11-23T01:03:57                    from topology_wrap.cpp:3668:
2019-11-23T01:03:57   /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
2019-11-23T01:03:57   /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’} changed in GCC 7.1
2019-11-23T01:03:57        vector<_Tp, _Alloc>::
2019-11-23T01:03:57        ^~~~~~~~~~~~~~~~~~~
2019-11-23T01:04:13   /usr/include/c++/8/bits/vector.tcc: In function ‘PyObject* _wrap_vectorDouble_insert(PyObject*, PyObject*)’:
2019-11-23T01:04:13   /usr/include/c++/8/bits/vector.tcc:149:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:04:13     _M_realloc_insert(begin() + (__position - cbegin()), __x);
2019-11-23T01:04:13     ^~~~~~~~~~~~~~~~~
2019-11-23T01:04:13   In file included from /usr/include/c++/8/vector:64,
2019-11-23T01:04:13                    from topology_wrap.cpp:3668:
2019-11-23T01:04:13   /usr/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:04:13     _M_fill_insert(begin() + __offset, __n, __x);
2019-11-23T01:04:13     ^~~~~~~~~~~~~~
2019-11-23T01:04:13   /usr/include/c++/8/bits/stl_vector.h: In function ‘PyObject* _wrap_vectorDouble_resize(PyObject*, PyObject*)’:
2019-11-23T01:04:13   /usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
2019-11-23T01:04:13       _M_fill_insert(end(), __new_size - size(), __x);
2019-11-23T01:04:13       ^~~~~~~~~~~~~~
2019-11-23T01:04:48   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/UnionFind.o build/temp.linux-armv7l-3.7/MergeTree.o build/temp.linux-armv7l-3.7/MorseComplex.o build/temp.linux-armv7l-3.7/utils.o build/temp.linux-armv7l-3.7/topology_wrap.o -o build/lib.linux-armv7l-3.7/_topology.cpython-37m-arm-linux-gnueabihf.so
2019-11-23T01:04:50   installing to build/bdist.linux-armv7l/wheel
2019-11-23T01:04:50   running install
2019-11-23T01:04:50   running install_lib
2019-11-23T01:04:50   creating build/bdist.linux-armv7l
2019-11-23T01:04:50   creating build/bdist.linux-armv7l/wheel
2019-11-23T01:04:50   creating build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/MergeTree.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/TopologicalObject.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/topology.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/MorseSmaleComplex.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/__init__.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/ContourTree.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/topopy/MorseComplex.py -> build/bdist.linux-armv7l/wheel/topopy
2019-11-23T01:04:50   copying build/lib.linux-armv7l-3.7/_topology.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2019-11-23T01:04:50   running install_egg_info
2019-11-23T01:04:50   running egg_info
2019-11-23T01:04:50   writing topopy.egg-info/PKG-INFO
2019-11-23T01:04:50   writing dependency_links to topopy.egg-info/dependency_links.txt
2019-11-23T01:04:50   writing requirements to topopy.egg-info/requires.txt
2019-11-23T01:04:50   writing top-level names to topopy.egg-info/top_level.txt
2019-11-23T01:04:50   reading manifest file 'topopy.egg-info/SOURCES.txt'
2019-11-23T01:04:50   reading manifest template 'MANIFEST.in'
2019-11-23T01:04:50   writing manifest file 'topopy.egg-info/SOURCES.txt'
2019-11-23T01:04:50   Copying topopy.egg-info to build/bdist.linux-armv7l/wheel/topopy-1.0.0-py3.7.egg-info
2019-11-23T01:04:50   running install_scripts
2019-11-23T01:04:50   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2019-11-23T01:04:50   creating build/bdist.linux-armv7l/wheel/topopy-1.0.0.dist-info/WHEEL
2019-11-23T01:04:50   creating '/tmp/pip-wheel-umbx2br8/topopy-1.0.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2019-11-23T01:04:52   adding '_topology.cpython-37m-arm-linux-gnueabihf.so'
2019-11-23T01:04:52   adding 'topopy/ContourTree.py'
2019-11-23T01:04:52   adding 'topopy/MergeTree.py'
2019-11-23T01:04:52   adding 'topopy/MorseComplex.py'
2019-11-23T01:04:52   adding 'topopy/MorseSmaleComplex.py'
2019-11-23T01:04:52   adding 'topopy/TopologicalObject.py'
2019-11-23T01:04:52   adding 'topopy/__init__.py'
2019-11-23T01:04:52   adding 'topopy/topology.py'
2019-11-23T01:04:52   adding 'topopy-1.0.0.dist-info/LICENSE'
2019-11-23T01:04:52   adding 'topopy-1.0.0.dist-info/METADATA'
2019-11-23T01:04:52   adding 'topopy-1.0.0.dist-info/WHEEL'
2019-11-23T01:04:52   adding 'topopy-1.0.0.dist-info/top_level.txt'
2019-11-23T01:04:52   adding 'topopy-1.0.0.dist-info/RECORD'
2019-11-23T01:04:52   removing build/bdist.linux-armv7l/wheel
2019-11-23T01:04:53   Building wheel for topopy (setup.py): finished with status 'done'
2019-11-23T01:04:53   Stored in directory: /tmp/tmp31l40kmw
2019-11-23T01:04:53 Successfully built topopy
2019-11-23T01:04:53 Cleaning up...
2019-11-23T01:04:53   Removing source in /tmp/pip-wheel-0l72xjhc/topopy
2019-11-23T01:04:53 Removed build tracker '/tmp/pip-req-tracker-lhh9oiz1'