2019-11-30T22:59:00 Created temporary directory: /tmp/pip-ephem-wheel-cache-ohlbu9ev
2019-11-30T22:59:00 Created temporary directory: /tmp/pip-req-tracker-n7lidhgs
2019-11-30T22:59:00 Created requirements tracker '/tmp/pip-req-tracker-n7lidhgs'
2019-11-30T22:59:00 Created temporary directory: /tmp/pip-wheel-xg3i4pch
2019-11-30T22:59:00 Collecting CNVkit==0.9.7b1
2019-11-30T22:59:00   1 location(s) to search for versions of CNVkit:
2019-11-30T22:59:00   * https://pypi.org/simple/cnvkit/
2019-11-30T22:59:00   Getting page https://pypi.org/simple/cnvkit/
2019-11-30T22:59:00   Analyzing links from page https://pypi.org/simple/cnvkit/
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/32/77/621ff6d47c503ccded6fa853e0cd472afed8e7977b0b34ed39172d5bc345/CNVkit-0.2.tar.gz#sha256=cc64082759a0d45f2475c00932ff34394c3881b3878dea7c3351c4843b351439 (from https://pypi.org/simple/cnvkit/), version: 0.2
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/71/ff/dbcf0245a0bf19f6ba8d2eaa116e49b5722cb5baec0d67d1102efc464c7d/CNVkit-0.2.1.tar.gz#sha256=e39f32de109c811b49e98aa0a56d16c600b2a4a570cd4dbb85ba8c51c99a0176 (from https://pypi.org/simple/cnvkit/), version: 0.2.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/0a/b6/4b3691109140a2c4b1e5088ea5c5647757c69b61668ecbbac99c1afe4c79/CNVkit-0.2.2.tar.gz#sha256=1a61fef6ae9e227446e624b5ccddaf66a9444260014a44d63573008b8ac858cf (from https://pypi.org/simple/cnvkit/), version: 0.2.2
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/17/e2/6620f157dc63466bf87b9a572f3601393388f198a6d4890184dfae8d4dba/CNVkit-0.2.3.tar.gz#sha256=cd25e17b1f11b6a727e65d8fff286b6a6131cbc220d766a46e62e311511a8009 (from https://pypi.org/simple/cnvkit/), version: 0.2.3
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/5c/8b/13bb9d9c7aded4fc72ef8826e6a753bf63803abcc780d7ddf472f4e5bfe7/CNVkit-0.2.4.tar.gz#sha256=46e219c47250f872f5e8a5c811810f22dbb83782482296d9352b014dddc6ec06 (from https://pypi.org/simple/cnvkit/), version: 0.2.4
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/c0/08/9f5d1761025faebf8e22ed100862b15340a5148990d5f2ee2ef91c0995ac/CNVkit-0.2.5.tar.gz#sha256=5817ee039adb833233491d9ee9ffd671ccaebe852c3d411857b82bef61c2a00d (from https://pypi.org/simple/cnvkit/), version: 0.2.5
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/f4/5c/5189ced8d6e13dfbdb4c06f727296ead4775f1b146d283d4118b3b5952af/CNVkit-0.3.0.tar.gz#sha256=8e627ec98c5accf6fad252ff582b556084af165c4cd39defdaa52d3d16f35d93 (from https://pypi.org/simple/cnvkit/), version: 0.3.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/c8/c1/729f012a6eff3ec15ab6bc7fa750b21c7007c7339ff4774eebe26779a268/CNVkit-0.3.1.tar.gz#sha256=fe12ae55599bb6c304ff18ec5f74859c2064b94c63ca62ff50071175842947d7 (from https://pypi.org/simple/cnvkit/), version: 0.3.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/f4/b1/177b9324042bf94b29ee3bf890eb9337c33210615ac793d950bd61622e5e/CNVkit-0.3.2.tar.gz#sha256=9d1ebdfa7ea6467f33de191e15f7463258711b8921f899b1ae1b02b3ad98bcfe (from https://pypi.org/simple/cnvkit/), version: 0.3.2
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/e1/53/4ae40544a7f4144a47a657ff63d002a18a7c12eb0d1838657ee84883f0af/CNVkit-0.3.3.tar.gz#sha256=499c2fb240f5d66f7238a677ca73ff7bb5fc9128d7d448126c7bb8e614e7e6c1 (from https://pypi.org/simple/cnvkit/), version: 0.3.3
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/97/78/4ac941c956e24d81c29b41d96a1ec74f2810e5047079432f6a1ab77504af/CNVkit-0.3.4.tar.gz#sha256=c17b07ce386fbaa0a4f8512e4032dc8c1ab3dbad345787a556b369bb1dc01a09 (from https://pypi.org/simple/cnvkit/), version: 0.3.4
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/b0/21/3cce6c5788ede1207866fce30a54222bd45803f97100bc042c65ec7f7006/CNVkit-0.3.5.tar.gz#sha256=145b4741ebfdcec5bbd59517da5d5829ea073103cfba91c347e96c038d9d8726 (from https://pypi.org/simple/cnvkit/), version: 0.3.5
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/34/b5/245ffadbbe12eded33141f0d5679e0ace537b4ea994cfb3b9be4e3c96b14/CNVkit-0.4.0.tar.gz#sha256=e8b055011debbf3a0f2442159161db75fa01827578295001271d37e1aca7fdc7 (from https://pypi.org/simple/cnvkit/), version: 0.4.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/b1/51/9033a886b88b9bccffacadc50e5745cc5b345bcf5eac43973b29cb73b669/CNVkit-0.4.1.tar.gz#sha256=4bdb47dcc58c646911bd8c5ddae170411e99a652a3ea746128d92df96c91fb73 (from https://pypi.org/simple/cnvkit/), version: 0.4.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/e9/2f/88b099e9c539e0da2197229f0b3c6847bffce3595c65d55c68db73e3b357/CNVkit-0.5.0.tar.gz#sha256=dc4ab2a36c2cecae416299e53c4caf53c42f67b27e4467a74959165d16d566a1 (from https://pypi.org/simple/cnvkit/), version: 0.5.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/de/2d/7a0e31c57af9ca71e9e06ed0b7389ce928592ed68711b3ea4fbbcc6148b0/CNVkit-0.5.1.tar.gz#sha256=ef8c721fead1ff03ca6ce733d206e9dfd41afb1e2c3f318f65de2a62e7c2e804 (from https://pypi.org/simple/cnvkit/), version: 0.5.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/ba/d4/53e991f7ed5484327ac2960796dde2b0df0481655943e6258d7df300d108/CNVkit-0.5.2.tar.gz#sha256=1bc2ff2982d291e7f05398778db07daea7b42f508e76ed9345680d88d54b5f3f (from https://pypi.org/simple/cnvkit/), version: 0.5.2
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/30/c0/73a2d9150e51f612454978a457b92d959dd595e369838152ee25691883c7/CNVkit-0.6.0.tar.gz#sha256=4c9e3f55289726ad3ba0b001adc7b4aa66aea4758c98c198930a47f04d830b90 (from https://pypi.org/simple/cnvkit/), version: 0.6.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/57/d5/d79279b28721dedb1454904927226fca956c97a240713116d8d13f73b5e1/CNVkit-0.6.1.tar.gz#sha256=36034432536ea045ad49bee4590fbe13507a3fafce488c5904fdccbbd9e27ece (from https://pypi.org/simple/cnvkit/), version: 0.6.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/82/4e/86ed817c29e3eed784ccdb312f75487527c60db801bf074a62308425bf3b/CNVkit-0.7.0.tar.gz#sha256=0e25ad00f9812035d7fe19de9907fc6cb06973399a6f82d7e65c5755a916da21 (from https://pypi.org/simple/cnvkit/), version: 0.7.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/8e/c3/f04accf7a1eb4d07a3b043bd5e55f9fe19c71f9755becec69f805dc5d41e/CNVkit-0.7.1.tar.gz#sha256=faa7fb94ea43f0e01e05ef6cb061dd941c252de278a9e8a536f5cb73d9aba1b0 (from https://pypi.org/simple/cnvkit/), version: 0.7.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/bc/7b/65347ea640a9cbc48031a6b78754de6ee89963c7bffb4e55596c606649b7/CNVkit-0.7.2.tar.gz#sha256=9fb5308c683a38b21319d8308081155e69d0f918e94a7b3ab04bc4ab27da47e6 (from https://pypi.org/simple/cnvkit/), version: 0.7.2
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/f6/3a/e0992c81352eff90eff0fc169dceeba905d58ddd2894de9c1dfa4da8a58d/CNVkit-0.7.3.tar.gz#sha256=86ee75c0a1202b4061f98d340e0218b459e448b9b7f43f0ecd8b80c699ecc7ea (from https://pypi.org/simple/cnvkit/), version: 0.7.3
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/ba/60/bb99adaee7c90d6437e095f564d842ab82515bc71018ae048a2d02023e89/CNVkit-0.7.4.tar.gz#sha256=809dd2c642bc872ee98e1d25337f0d963c261102388b6c16365b15fa1c00400d (from https://pypi.org/simple/cnvkit/), version: 0.7.4
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/6c/d4/72a550e603acbb6160dcb9f9ce740e123328ddd5764f04b20c6e59dc27c7/CNVkit-0.7.5.tar.gz#sha256=20460c6469ccf5bfeadc81e8c35a4015bd4f41ec247fb54577cfdc2925ad7e1c (from https://pypi.org/simple/cnvkit/), version: 0.7.5
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/6b/f0/98971dfde24cc0ebeab120a907a9ad48a4d5e8d8779904dc51d3a6e5e5c0/CNVkit-0.7.6.tar.gz#sha256=2646f362fc041a22dc75312e45ab524cefec00d1de5509e58ee4130bb9d3b029 (from https://pypi.org/simple/cnvkit/), version: 0.7.6
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/52/6a/118af6fdc7183ddd1359937bd58211faa1e1977b1721bbca1b68aa70a0a6/CNVkit-0.7.7.tar.gz#sha256=4f3c0e830cae727a2920d87cfaab4983f55c4e34613d2d4a8b2d2c986ceb53fc (from https://pypi.org/simple/cnvkit/), version: 0.7.7
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/b1/ed/72ba9f4e1c5d615af3c23bf44ef01797b72b3d3cfbadf5b08658888ded42/CNVkit-0.7.8.tar.gz#sha256=b365d831329d7c939db267e4585511591a173e333b23f571e2f5ff52ac4e89ea (from https://pypi.org/simple/cnvkit/), version: 0.7.8
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/1c/af/83fb0dc51302827a407a898172220ebcfe6467c94f5f0585d64f4d25edaa/CNVkit-0.7.9.tar.gz#sha256=5ee063b3feb17c82de03f22608bdaff44caf1768bccde93cdb4e901a49770df0 (from https://pypi.org/simple/cnvkit/), version: 0.7.9
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/6f/96/af23dbe329fce0f0b1124d997d2f895c7cf05119e854aecc764b452ee236/CNVkit-0.7.10.tar.gz#sha256=7d2094e0edf6cc79856884a7c36137ff19e871a7423a6a79325795894f0e6555 (from https://pypi.org/simple/cnvkit/), version: 0.7.10
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/65/bd/78d0702de271f06c492a9b502980154394c91028ce9afcf31df4081e0d63/CNVkit-0.7.11.tar.gz#sha256=5de7b06d55f3485a8615463e4367e8631729bf72b6e994d21ca508fd872a5824 (from https://pypi.org/simple/cnvkit/), version: 0.7.11
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/b6/13/c084767ea617bf413a78d97b885949661f51d968def9d1b050c2880883bf/CNVkit-0.8.0.tar.gz#sha256=656c92ed90ac2cf212585e87219c494eddb710773f859cc792034a560c87a626 (from https://pypi.org/simple/cnvkit/), version: 0.8.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/c7/f4/4b6880cac43e5aae09542a5316cd77a359a778e3a6964b5a5a8c325397db/CNVkit-0.8.1.tar.gz#sha256=7691d21fc109412064e27f104374f8c811243b45b1d35ffd8119281305a8f648 (from https://pypi.org/simple/cnvkit/), version: 0.8.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/f3/58/34ac43541c0fc3d1817b3109c54e865001176c340cab8beb30a8aa220096/CNVkit-0.8.2.tar.gz#sha256=2ba862c6c4def6e182b7eb69e5b3d37c11a49d128e3f225e8626f6c5bd5f58d0 (from https://pypi.org/simple/cnvkit/), version: 0.8.2
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/49/05/23ed310f7478a8f75d5f5e7beea701c5ea38e2925444a6c08d6ade587ac8/CNVkit-0.8.3.tar.gz#sha256=4cd027f021382ec0a6a79456775d99ae441bd2ddc400d858b90071d1ea32ebcb (from https://pypi.org/simple/cnvkit/), version: 0.8.3
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/c0/91/87fe6e9784ac858261098649d428191aecc3f1f1b2acd52d6b6228a57cd0/CNVkit-0.8.4.tar.gz#sha256=471eb4ad2a15aa78fdf678eb9ee53e401e49f86793604bfea2f7efaca5e41143 (from https://pypi.org/simple/cnvkit/), version: 0.8.4
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/bb/05/336b14341a942aeb40e4692f75e05d8cc35dc6ef5c8524df6c91a56b1eba/CNVkit-0.8.5.tar.gz#sha256=f1084186f767dc92dc2eb274aa79dfd6a36dc32f68a29bc67df13fdbfa299b57 (from https://pypi.org/simple/cnvkit/), version: 0.8.5
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/24/4f/ad111db335d76134fe1bdf4834da59a97c069d906aac54344ecdf6c7f5b5/CNVkit-0.9.0.tar.gz#sha256=3f562388058ea06103e8e51284cbc4db9a3363a0254c867c225591b2f21d04e0 (from https://pypi.org/simple/cnvkit/), version: 0.9.0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/5b/09/0c07291435665f9336dcda9b9ee6578da925b73a26b7583f3996f5feeca7/CNVkit-0.9.1.tar.gz#sha256=417b0ddfa24f02b81e4dcfe8367a50eee0017db411f5f3d7f0e3986e690b15a1 (from https://pypi.org/simple/cnvkit/), version: 0.9.1
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/b2/29/dc460b114eec6361554dc4709628fe309fe726a2eee6027e061cb096acaa/CNVkit-0.9.3.tar.gz#sha256=a10ee65b946c0708b2ee7f40f291fcd4a6af3811f0cc77791ea723b66e306f16 (from https://pypi.org/simple/cnvkit/), version: 0.9.3
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/cd/33/9c97e984e2e29ae6a7867ce1f5ffe719bfa15ba71040e5f7ba92ecaab2e9/CNVkit-0.9.4.tar.gz#sha256=617dd01aea9820c8ede8b9dffd598b7cf2d8aea769cc393ce44a8d6f3d976843 (from https://pypi.org/simple/cnvkit/), version: 0.9.4
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/74/7b/e540e5c5da56c17b67ecd7652af455e9b90f255c7660be8b3507036707ae/CNVkit-0.9.5.tar.gz#sha256=43ef1309b2190bd86bcc9125c9b9feec1c6b665743ae3bc6fd34c86eeb0247e9 (from https://pypi.org/simple/cnvkit/), version: 0.9.5
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/e1/26/a3f7541c9b75e9d1237964e657c60cb628909b3fb10bd33c2fce23d44e87/CNVkit-0.9.6.tar.gz#sha256=be889c98a5cf0a994330b8c31c0a65151fb0095fe4e75a1e04118da2516248c2 (from https://pypi.org/simple/cnvkit/), version: 0.9.6
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/2a/7b/167074cd4485557d605d7e659cd5130b8bdb225ee8de8d30bb6b19fc39d4/CNVkit-0.9.7b0.tar.gz#sha256=4b0af020775c2ae0d50f56c707c704bb746a23ff518cd7c8179211af6fb6ad78 (from https://pypi.org/simple/cnvkit/), version: 0.9.7b0
2019-11-30T22:59:00     Found link https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz#sha256=4ff341929c3f384531b8aadc6164f8bbd45c598b902e15710e52b9266da22640 (from https://pypi.org/simple/cnvkit/), version: 0.9.7b1
2019-11-30T22:59:00   Using version 0.9.7b1 (newest of versions: 0.9.7b1)
2019-11-30T22:59:01   Created temporary directory: /tmp/pip-unpack-bblkh7cr
2019-11-30T22:59:01   Downloading https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz (168kB)
2019-11-30T22:59:01   Downloading from URL https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz#sha256=4ff341929c3f384531b8aadc6164f8bbd45c598b902e15710e52b9266da22640 (from https://pypi.org/simple/cnvkit/)
2019-11-30T22:59:01   Added CNVkit==0.9.7b1 from https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz#sha256=4ff341929c3f384531b8aadc6164f8bbd45c598b902e15710e52b9266da22640 to build tracker '/tmp/pip-req-tracker-n7lidhgs'
2019-11-30T22:59:01     Running setup.py (path:/tmp/pip-wheel-xg3i4pch/CNVkit/setup.py) egg_info for package CNVkit
2019-11-30T22:59:01     Running command python setup.py egg_info
2019-11-30T22:59:03     running egg_info
2019-11-30T22:59:03     creating pip-egg-info/CNVkit.egg-info
2019-11-30T22:59:03     writing top-level names to pip-egg-info/CNVkit.egg-info/top_level.txt
2019-11-30T22:59:03     writing pip-egg-info/CNVkit.egg-info/PKG-INFO
2019-11-30T22:59:03     writing requirements to pip-egg-info/CNVkit.egg-info/requires.txt
2019-11-30T22:59:03     writing dependency_links to pip-egg-info/CNVkit.egg-info/dependency_links.txt
2019-11-30T22:59:03     writing manifest file 'pip-egg-info/CNVkit.egg-info/SOURCES.txt'
2019-11-30T22:59:04     reading manifest file 'pip-egg-info/CNVkit.egg-info/SOURCES.txt'
2019-11-30T22:59:04     writing manifest file 'pip-egg-info/CNVkit.egg-info/SOURCES.txt'
2019-11-30T22:59:04     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing '0.9.7.b1' to '0.9.7b1'
2019-11-30T22:59:04       normalized_version,
2019-11-30T22:59:04   Source in /tmp/pip-wheel-xg3i4pch/CNVkit has version 0.9.7b1, which satisfies requirement CNVkit==0.9.7b1 from https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz#sha256=4ff341929c3f384531b8aadc6164f8bbd45c598b902e15710e52b9266da22640
2019-11-30T22:59:04   Removed CNVkit==0.9.7b1 from https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz#sha256=4ff341929c3f384531b8aadc6164f8bbd45c598b902e15710e52b9266da22640 from build tracker '/tmp/pip-req-tracker-n7lidhgs'
2019-11-30T22:59:04 Building wheels for collected packages: CNVkit
2019-11-30T22:59:04   Created temporary directory: /tmp/pip-wheel-18kfnknk
2019-11-30T22:59:04   Building wheel for CNVkit (setup.py): started
2019-11-30T22:59:04   Destination directory: /tmp/pip-wheel-18kfnknk
2019-11-30T22:59:04   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-xg3i4pch/CNVkit/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-18kfnknk
2019-11-30T22:59:06   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing '0.9.7.b1' to '0.9.7b1'
2019-11-30T22:59:06     normalized_version,
2019-11-30T22:59:06   running bdist_wheel
2019-11-30T22:59:06   running build
2019-11-30T22:59:06   running build_py
2019-11-30T22:59:06   creating build
2019-11-30T22:59:06   creating build/lib
2019-11-30T22:59:06   creating build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/vary.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/params.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/fix.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/_version.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/bintest.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/segfilters.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/cnary.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/autobin.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/batch.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/samutil.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/smoothing.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/antitarget.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/call.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/cluster.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/target.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/metrics.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/rna.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/plots.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/segmetrics.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/descriptives.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/export.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/access.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/cmdutil.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/scatter.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/heatmap.py -> build/lib/cnvlib
2019-11-30T22:59:06   copying cnvlib/reports.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/commands.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/diagram.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/parallel.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/importers.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/reference.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/import_rna.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/core.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/__init__.py -> build/lib/cnvlib
2019-11-30T22:59:07   copying cnvlib/coverage.py -> build/lib/cnvlib
2019-11-30T22:59:07   creating build/lib/cnvlib/segmentation
2019-11-30T22:59:07   copying cnvlib/segmentation/flasso.py -> build/lib/cnvlib/segmentation
2019-11-30T22:59:07   copying cnvlib/segmentation/none.py -> build/lib/cnvlib/segmentation
2019-11-30T22:59:07   copying cnvlib/segmentation/haar.py -> build/lib/cnvlib/segmentation
2019-11-30T22:59:07   copying cnvlib/segmentation/cbs.py -> build/lib/cnvlib/segmentation
2019-11-30T22:59:07   copying cnvlib/segmentation/__init__.py -> build/lib/cnvlib/segmentation
2019-11-30T22:59:07   copying cnvlib/segmentation/hmm.py -> build/lib/cnvlib/segmentation
2019-11-30T22:59:07   creating build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/intersect.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/merge.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/combiners.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/subdivide.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/subtract.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/chromsort.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/rangelabel.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/__init__.py -> build/lib/skgenome
2019-11-30T22:59:07   copying skgenome/gary.py -> build/lib/skgenome
2019-11-30T22:59:07   creating build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/gff.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/bedio.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/seg.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/util.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/textcoord.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/vcfsimple.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/vcfio.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/tab.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/seqdict.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/genepred.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/__init__.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   copying skgenome/tabio/picard.py -> build/lib/skgenome/tabio
2019-11-30T22:59:07   running build_scripts
2019-11-30T22:59:07   creating build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/cnvkit.py -> build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/scripts/cnv_annotate.py -> build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/scripts/cnv_expression_correlate.py -> build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/scripts/cnv_updater.py -> build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/scripts/reference2targets.py -> build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/scripts/skg_convert.py -> build/scripts-3.5
2019-11-30T22:59:07   copying and adjusting /tmp/pip-wheel-xg3i4pch/CNVkit/scripts/guess_baits.py -> build/scripts-3.5
2019-11-30T22:59:07   changing mode of build/scripts-3.5/cnvkit.py from 644 to 755
2019-11-30T22:59:07   changing mode of build/scripts-3.5/cnv_annotate.py from 644 to 755
2019-11-30T22:59:07   changing mode of build/scripts-3.5/cnv_expression_correlate.py from 644 to 755
2019-11-30T22:59:07   changing mode of build/scripts-3.5/cnv_updater.py from 644 to 755
2019-11-30T22:59:07   changing mode of build/scripts-3.5/reference2targets.py from 644 to 755
2019-11-30T22:59:07   changing mode of build/scripts-3.5/skg_convert.py from 644 to 755
2019-11-30T22:59:07   changing mode of build/scripts-3.5/guess_baits.py from 644 to 755
2019-11-30T22:59:07   installing to build/bdist.linux-armv7l/wheel
2019-11-30T22:59:07   running install
2019-11-30T22:59:07   running install_lib
2019-11-30T22:59:07   creating build/bdist.linux-armv7l
2019-11-30T22:59:07   creating build/bdist.linux-armv7l/wheel
2019-11-30T22:59:07   creating build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/vary.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/params.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/fix.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/_version.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/bintest.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/cnary.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/autobin.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/batch.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/samutil.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/call.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/cluster.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/target.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/metrics.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/rna.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/plots.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/segmetrics.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/export.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/access.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/scatter.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/reports.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/commands.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/diagram.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/parallel.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/importers.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/reference.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/import_rna.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/core.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   copying build/lib/cnvlib/coverage.py -> build/bdist.linux-armv7l/wheel/cnvlib
2019-11-30T22:59:07   creating build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   copying build/lib/cnvlib/segmentation/flasso.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   copying build/lib/cnvlib/segmentation/hmm.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation
2019-11-30T22:59:07   creating build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/intersect.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/merge.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/combiners.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/subdivide.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/subtract.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   creating build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/vcfsimple.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio
2019-11-30T22:59:07   copying build/lib/skgenome/chromsort.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   copying build/lib/skgenome/gary.py -> build/bdist.linux-armv7l/wheel/skgenome
2019-11-30T22:59:07   running install_egg_info
2019-11-30T22:59:07   running egg_info
2019-11-30T22:59:07   writing top-level names to CNVkit.egg-info/top_level.txt
2019-11-30T22:59:07   writing dependency_links to CNVkit.egg-info/dependency_links.txt
2019-11-30T22:59:07   writing requirements to CNVkit.egg-info/requires.txt
2019-11-30T22:59:07   writing CNVkit.egg-info/PKG-INFO
2019-11-30T22:59:07   reading manifest file 'CNVkit.egg-info/SOURCES.txt'
2019-11-30T22:59:07   writing manifest file 'CNVkit.egg-info/SOURCES.txt'
2019-11-30T22:59:07   Copying CNVkit.egg-info to build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1-py3.5.egg-info
2019-11-30T22:59:07   running install_scripts
2019-11-30T22:59:08   creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data
2019-11-30T22:59:08   creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/cnv_annotate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/cnv_expression_correlate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/cnv_updater.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/reference2targets.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/skg_convert.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/guess_baits.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   copying build/scripts-3.5/cnvkit.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/cnv_annotate.py to 755
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/cnv_expression_correlate.py to 755
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/cnv_updater.py to 755
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/reference2targets.py to 755
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/skg_convert.py to 755
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/guess_baits.py to 755
2019-11-30T22:59:08   changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.data/scripts/cnvkit.py to 755
2019-11-30T22:59:08   creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.7b1.dist-info/WHEEL
2019-11-30T22:59:08   Building wheel for CNVkit (setup.py): finished with status 'done'
2019-11-30T22:59:08   Stored in directory: /tmp/tmpcxcm5tf0
2019-11-30T22:59:08 Successfully built CNVkit
2019-11-30T22:59:08 Cleaning up...
2019-11-30T22:59:08   Removing source in /tmp/pip-wheel-xg3i4pch/CNVkit
2019-11-30T22:59:08 Removed build tracker '/tmp/pip-req-tracker-n7lidhgs'