2019-12-05T07:37:02 Created temporary directory: /tmp/pip-ephem-wheel-cache-k3f5uwer 2019-12-05T07:37:02 Created temporary directory: /tmp/pip-req-tracker-fx9u7er5 2019-12-05T07:37:02 Created requirements tracker '/tmp/pip-req-tracker-fx9u7er5' 2019-12-05T07:37:02 Created temporary directory: /tmp/pip-wheel-3ehfwcue 2019-12-05T07:37:02 Collecting RouToolPa==0.85 2019-12-05T07:37:02 1 location(s) to search for versions of RouToolPa: 2019-12-05T07:37:02 * https://pypi.org/simple/routoolpa/ 2019-12-05T07:37:02 Getting page https://pypi.org/simple/routoolpa/ 2019-12-05T07:37:02 Analyzing links from page https://pypi.org/simple/routoolpa/ 2019-12-05T07:37:02 Found link https://files.pythonhosted.org/packages/25/2a/d654c1f3fba268cfeb0d01f93a9738f392a5be2d4b6c150dd45df123299b/RouToolPa-0.80.tar.gz#sha256=667d3b75011c9c2f73c9431785c187868b3150ba886934f29b77f780361230c3 (from https://pypi.org/simple/routoolpa/), version: 0.80 2019-12-05T07:37:02 Found link https://files.pythonhosted.org/packages/ff/1e/893e5d09013dbd46bafa9e83d49c5cca34b285ad698d1f75bc452ab3ac64/RouToolPa-0.82.tar.gz#sha256=bab9660e0d3040ddf32c19747a518573f586c9629777c3b09c4fac4b9dd3a8c4 (from https://pypi.org/simple/routoolpa/), version: 0.82 2019-12-05T07:37:02 Found link https://files.pythonhosted.org/packages/6e/cf/7458f9685ae3703a7f12c02197b52fd60475ba5c98bd16402f64f3c31086/RouToolPa-0.83.tar.gz#sha256=85bf0e6324937682f55017c885b2a20aa0a3b8b9341ba94d689331118e8be3c5 (from https://pypi.org/simple/routoolpa/), version: 0.83 2019-12-05T07:37:02 Found link https://files.pythonhosted.org/packages/34/00/6e960a944db3ef070a848aaeb356a5895a187ed5dd56aad63a0316b76e8a/RouToolPa-0.84.tar.gz#sha256=0b11e71c61f9aa245f0fe65b49fd662ad0279f1d9b17efa4709296249fa5fed1 (from https://pypi.org/simple/routoolpa/), version: 0.84 2019-12-05T07:37:02 Found link https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz#sha256=0a5e1b9a64e0d0caaef75f13d7c05745067e4b108ea17ac8dfe256eb5785f283 (from https://pypi.org/simple/routoolpa/), version: 0.85 2019-12-05T07:37:02 Using version 0.85 (newest of versions: 0.85) 2019-12-05T07:37:02 Created temporary directory: /tmp/pip-unpack-1w9zyacg 2019-12-05T07:37:03 Downloading https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz (336kB) 2019-12-05T07:37:03 Downloading from URL https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz#sha256=0a5e1b9a64e0d0caaef75f13d7c05745067e4b108ea17ac8dfe256eb5785f283 (from https://pypi.org/simple/routoolpa/) 2019-12-05T07:37:05 Added RouToolPa==0.85 from https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz#sha256=0a5e1b9a64e0d0caaef75f13d7c05745067e4b108ea17ac8dfe256eb5785f283 to build tracker '/tmp/pip-req-tracker-fx9u7er5' 2019-12-05T07:37:05 Running setup.py (path:/tmp/pip-wheel-3ehfwcue/RouToolPa/setup.py) egg_info for package RouToolPa 2019-12-05T07:37:05 Running command python setup.py egg_info 2019-12-05T07:37:07 running egg_info 2019-12-05T07:37:07 creating pip-egg-info/RouToolPa.egg-info 2019-12-05T07:37:07 writing requirements to pip-egg-info/RouToolPa.egg-info/requires.txt 2019-12-05T07:37:07 writing pip-egg-info/RouToolPa.egg-info/PKG-INFO 2019-12-05T07:37:07 writing dependency_links to pip-egg-info/RouToolPa.egg-info/dependency_links.txt 2019-12-05T07:37:07 writing top-level names to pip-egg-info/RouToolPa.egg-info/top_level.txt 2019-12-05T07:37:07 writing manifest file 'pip-egg-info/RouToolPa.egg-info/SOURCES.txt' 2019-12-05T07:37:07 reading manifest file 'pip-egg-info/RouToolPa.egg-info/SOURCES.txt' 2019-12-05T07:37:07 writing manifest file 'pip-egg-info/RouToolPa.egg-info/SOURCES.txt' 2019-12-05T07:37:07 Source in /tmp/pip-wheel-3ehfwcue/RouToolPa has version 0.85, which satisfies requirement RouToolPa==0.85 from https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz#sha256=0a5e1b9a64e0d0caaef75f13d7c05745067e4b108ea17ac8dfe256eb5785f283 2019-12-05T07:37:07 Removed RouToolPa==0.85 from https://files.pythonhosted.org/packages/05/e3/5f66679fcdaaf979fb8e2eeb4a354053d22cc66ce64e71c46b6b378027ed/RouToolPa-0.85.tar.gz#sha256=0a5e1b9a64e0d0caaef75f13d7c05745067e4b108ea17ac8dfe256eb5785f283 from build tracker '/tmp/pip-req-tracker-fx9u7er5' 2019-12-05T07:37:07 Building wheels for collected packages: RouToolPa 2019-12-05T07:37:07 Created temporary directory: /tmp/pip-wheel-r7oiy2zh 2019-12-05T07:37:07 Building wheel for RouToolPa (setup.py): started 2019-12-05T07:37:07 Destination directory: /tmp/pip-wheel-r7oiy2zh 2019-12-05T07:37:07 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-3ehfwcue/RouToolPa/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-r7oiy2zh 2019-12-05T07:37:09 running bdist_wheel 2019-12-05T07:37:09 running build 2019-12-05T07:37:09 running build_py 2019-12-05T07:37:10 creating build 2019-12-05T07:37:10 creating build/lib 2019-12-05T07:37:10 creating build/lib/RouToolPa 2019-12-05T07:37:10 copying RouToolPa/__init__.py -> build/lib/RouToolPa 2019-12-05T07:37:10 creating build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/File.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Drawing.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Evolution.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/TreeFam.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/MtDNA.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Ensembl.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/VCF.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/NCBI.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Project.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Tree.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Phylogenetics.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Annotations.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/EggNOG.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Fastq.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/GO.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Math.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Sequence.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Alignment.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/MultipleAlignment.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Expression.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/SequenceCluster.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Primer.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Pacbio.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/Matplotlib.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 copying RouToolPa/Routines/__init__.py -> build/lib/RouToolPa/Routines 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools 2019-12-05T07:37:10 copying RouToolPa/Tools/RepeatSearchTools.py -> build/lib/RouToolPa/Tools 2019-12-05T07:37:10 copying RouToolPa/Tools/Picard.py -> build/lib/RouToolPa/Tools 2019-12-05T07:37:10 copying RouToolPa/Tools/AssemblyTools.py -> build/lib/RouToolPa/Tools 2019-12-05T07:37:10 copying RouToolPa/Tools/TVC.py -> build/lib/RouToolPa/Tools 2019-12-05T07:37:10 copying RouToolPa/Tools/Abstract.py -> build/lib/RouToolPa/Tools 2019-12-05T07:37:10 copying RouToolPa/Tools/__init__.py -> build/lib/RouToolPa/Tools 2019-12-05T07:37:10 creating build/lib/RouToolPa/Formats 2019-12-05T07:37:10 copying RouToolPa/Formats/VariantFormats.py -> build/lib/RouToolPa/Formats 2019-12-05T07:37:10 copying RouToolPa/Formats/AlignmentFormats.py -> build/lib/RouToolPa/Formats 2019-12-05T07:37:10 copying RouToolPa/Formats/AnnotationFormats.py -> build/lib/RouToolPa/Formats 2019-12-05T07:37:10 copying RouToolPa/Formats/__init__.py -> build/lib/RouToolPa/Formats 2019-12-05T07:37:10 creating build/lib/RouToolPa/Collections 2019-12-05T07:37:10 copying RouToolPa/Collections/__init__.py -> build/lib/RouToolPa/Collections 2019-12-05T07:37:10 copying RouToolPa/Collections/General.py -> build/lib/RouToolPa/Collections 2019-12-05T07:37:10 creating build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Barrnap.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/GFF.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/BUSCO.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/BLAST.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/LAST.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Primer3.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/CAFE.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/TRF.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Haploview.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/VCF.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/FaCut.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/GVF.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/R.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/KrATER.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/DESeq2.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Sequence.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/CCFOld.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/MultipleAlignment.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/HGMD.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Dovetail.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Coockiecutter.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Cufflinks.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/VCFOld.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/SNPeff.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/FastQC.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Abstract.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/PAML.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/Trimmomatic.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/__init__.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/PLINK.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 copying RouToolPa/Parsers/General.py -> build/lib/RouToolPa/Parsers 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:10 copying RouToolPa/Tools/RepeatMasking/TRF.py -> build/lib/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:10 copying RouToolPa/Tools/RepeatMasking/RepeatScout.py -> build/lib/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:10 copying RouToolPa/Tools/RepeatMasking/RepeatMasker.py -> build/lib/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:10 copying RouToolPa/Tools/RepeatMasking/RepeatModeler.py -> build/lib/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:10 copying RouToolPa/Tools/RepeatMasking/__init__.py -> build/lib/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/BLAST 2019-12-05T07:37:10 copying RouToolPa/Tools/BLAST/BLAST.py -> build/lib/RouToolPa/Tools/BLAST 2019-12-05T07:37:10 copying RouToolPa/Tools/BLAST/BLASTPlus.py -> build/lib/RouToolPa/Tools/BLAST 2019-12-05T07:37:10 copying RouToolPa/Tools/BLAST/__init__.py -> build/lib/RouToolPa/Tools/BLAST 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/EMPHF 2019-12-05T07:37:10 copying RouToolPa/Tools/EMPHF/EMPHF.py -> build/lib/RouToolPa/Tools/EMPHF 2019-12-05T07:37:10 copying RouToolPa/Tools/EMPHF/__init__.py -> build/lib/RouToolPa/Tools/EMPHF 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/Kmers 2019-12-05T07:37:10 copying RouToolPa/Tools/Kmers/Jellyfish.py -> build/lib/RouToolPa/Tools/Kmers 2019-12-05T07:37:10 copying RouToolPa/Tools/Kmers/GenomeTester4.py -> build/lib/RouToolPa/Tools/Kmers 2019-12-05T07:37:10 copying RouToolPa/Tools/Kmers/__init__.py -> build/lib/RouToolPa/Tools/Kmers 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:10 copying RouToolPa/Tools/Scaffolders/SSPACE.py -> build/lib/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:10 copying RouToolPa/Tools/Scaffolders/LRNAScaffolder.py -> build/lib/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:10 copying RouToolPa/Tools/Scaffolders/__init__.py -> build/lib/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/Picard 2019-12-05T07:37:10 copying RouToolPa/Tools/Picard/SortVcf.py -> build/lib/RouToolPa/Tools/Picard 2019-12-05T07:37:10 copying RouToolPa/Tools/Picard/CreateSequenceDictionary.py -> build/lib/RouToolPa/Tools/Picard 2019-12-05T07:37:10 copying RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py -> build/lib/RouToolPa/Tools/Picard 2019-12-05T07:37:10 copying RouToolPa/Tools/Picard/MarkDuplicates.py -> build/lib/RouToolPa/Tools/Picard 2019-12-05T07:37:10 copying RouToolPa/Tools/Picard/__init__.py -> build/lib/RouToolPa/Tools/Picard 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/Primers 2019-12-05T07:37:10 copying RouToolPa/Tools/Primers/Primer3.py -> build/lib/RouToolPa/Tools/Primers 2019-12-05T07:37:10 copying RouToolPa/Tools/Primers/__init__.py -> build/lib/RouToolPa/Tools/Primers 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/BioFormats 2019-12-05T07:37:10 copying RouToolPa/Tools/BioFormats/BioConvert.py -> build/lib/RouToolPa/Tools/BioFormats 2019-12-05T07:37:10 copying RouToolPa/Tools/BioFormats/__init__.py -> build/lib/RouToolPa/Tools/BioFormats 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/GapClosers 2019-12-05T07:37:10 copying RouToolPa/Tools/GapClosers/GapFiller.py -> build/lib/RouToolPa/Tools/GapClosers 2019-12-05T07:37:10 copying RouToolPa/Tools/GapClosers/Sealer.py -> build/lib/RouToolPa/Tools/GapClosers 2019-12-05T07:37:10 copying RouToolPa/Tools/GapClosers/__init__.py -> build/lib/RouToolPa/Tools/GapClosers 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/AIndex 2019-12-05T07:37:10 copying RouToolPa/Tools/AIndex/AIndex.py -> build/lib/RouToolPa/Tools/AIndex 2019-12-05T07:37:10 copying RouToolPa/Tools/AIndex/__init__.py -> build/lib/RouToolPa/Tools/AIndex 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/Population 2019-12-05T07:37:10 copying RouToolPa/Tools/Population/PSMC.py -> build/lib/RouToolPa/Tools/Population 2019-12-05T07:37:10 copying RouToolPa/Tools/Population/__init__.py -> build/lib/RouToolPa/Tools/Population 2019-12-05T07:37:10 copying RouToolPa/Tools/Population/PLINK.py -> build/lib/RouToolPa/Tools/Population 2019-12-05T07:37:10 creating build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/CombineVariants.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/AnalyzeCovariates.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/BaseRecalibrator.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/ValidateVariants.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/ApplyRecalibration.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/VariantFiltration.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/RealignerTargetCreator.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/HaplotypeCaller.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/VariantRecalibrator.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:10 copying RouToolPa/Tools/GATK/UnifiedGenotyper.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/CatVariants.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/GenotypeGVCFs.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/IndelRealigner.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/PrintReads.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/Abstract.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/__init__.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK/SelectVariants.py -> build/lib/RouToolPa/Tools/GATK 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/ExaBayes.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/MrBayes.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/PartitionFinder.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/ExaML.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/RAxML.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/__init__.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 copying RouToolPa/Tools/Phylogenetics/Gblocks.py -> build/lib/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/DISCOVAR.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/Fermi.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/Spades.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/Supernova.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/BionanoSolve.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/MaSuRCA.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/PEAR.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/Platanus.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/__init__.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 copying RouToolPa/Tools/Assemblers/Quast.py -> build/lib/RouToolPa/Tools/Assemblers 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:11 copying RouToolPa/Tools/LinuxTools/CGAS.py -> build/lib/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:11 copying RouToolPa/Tools/LinuxTools/Valgrind.py -> build/lib/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:11 copying RouToolPa/Tools/LinuxTools/Download.py -> build/lib/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:11 copying RouToolPa/Tools/LinuxTools/__init__.py -> build/lib/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:11 copying RouToolPa/Tools/MultipleAlignment/SWAMP.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:11 copying RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:11 copying RouToolPa/Tools/MultipleAlignment/PRANK.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:11 copying RouToolPa/Tools/MultipleAlignment/MAFFT.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:11 copying RouToolPa/Tools/MultipleAlignment/__init__.py -> build/lib/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/ImageMagick 2019-12-05T07:37:11 copying RouToolPa/Tools/ImageMagick/Convert.py -> build/lib/RouToolPa/Tools/ImageMagick 2019-12-05T07:37:11 copying RouToolPa/Tools/ImageMagick/__init__.py -> build/lib/RouToolPa/Tools/ImageMagick 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Expression 2019-12-05T07:37:11 copying RouToolPa/Tools/Expression/Cufflinks.py -> build/lib/RouToolPa/Tools/Expression 2019-12-05T07:37:11 copying RouToolPa/Tools/Expression/__init__.py -> build/lib/RouToolPa/Tools/Expression 2019-12-05T07:37:11 copying RouToolPa/Tools/Expression/HTSeq.py -> build/lib/RouToolPa/Tools/Expression 2019-12-05T07:37:11 copying RouToolPa/Tools/Expression/Subread.py -> build/lib/RouToolPa/Tools/Expression 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Samtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Samtools/Samtools.py -> build/lib/RouToolPa/Tools/Samtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Samtools/__init__.py -> build/lib/RouToolPa/Tools/Samtools 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Evolution 2019-12-05T07:37:11 copying RouToolPa/Tools/Evolution/__init__.py -> build/lib/RouToolPa/Tools/Evolution 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Stirka 2019-12-05T07:37:11 copying RouToolPa/Tools/Stirka/Trimmer.py -> build/lib/RouToolPa/Tools/Stirka 2019-12-05T07:37:11 copying RouToolPa/Tools/Stirka/__init__.py -> build/lib/RouToolPa/Tools/Stirka 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/MaskFasta.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/GetFasta.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/Flank.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/Intersect.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/GenomeCov.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/BamToFastq.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 copying RouToolPa/Tools/Bedtools/__init__.py -> build/lib/RouToolPa/Tools/Bedtools 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/HMMER 2019-12-05T07:37:11 copying RouToolPa/Tools/HMMER/HMMER3.py -> build/lib/RouToolPa/Tools/HMMER 2019-12-05T07:37:11 copying RouToolPa/Tools/HMMER/__init__.py -> build/lib/RouToolPa/Tools/HMMER 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Clustering 2019-12-05T07:37:11 copying RouToolPa/Tools/Clustering/CDHit.py -> build/lib/RouToolPa/Tools/Clustering 2019-12-05T07:37:11 copying RouToolPa/Tools/Clustering/__init__.py -> build/lib/RouToolPa/Tools/Clustering 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/Tophat.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/Bowtie2.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/TMAP.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/GMAP.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/STAR.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/LongRanger.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/BWA.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/Novoalign.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/BLAT.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/GEM.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 copying RouToolPa/Tools/Alignment/__init__.py -> build/lib/RouToolPa/Tools/Alignment 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/SRAToolkit 2019-12-05T07:37:11 copying RouToolPa/Tools/SRAToolkit/FastqDump.py -> build/lib/RouToolPa/Tools/SRAToolkit 2019-12-05T07:37:11 copying RouToolPa/Tools/SRAToolkit/__init__.py -> build/lib/RouToolPa/Tools/SRAToolkit 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/Clumpify.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/FaCut.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/NextClip.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/Adapters.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/FastQC.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/TrimGalore.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/Trimmomatic.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/__init__.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/Cutadapt.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 copying RouToolPa/Tools/Filter/Cookiecutter.py -> build/lib/RouToolPa/Tools/Filter 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/WGA 2019-12-05T07:37:11 copying RouToolPa/Tools/WGA/LAST.py -> build/lib/RouToolPa/Tools/WGA 2019-12-05T07:37:11 copying RouToolPa/Tools/WGA/__init__.py -> build/lib/RouToolPa/Tools/WGA 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/GenotypeGVCFs4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/VariantFiltration4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/SelectVariants4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/AnalyzeCovariates4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/HaplotypeCaller4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/SortVcf4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/CombineGVCFs4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/UnifiedGenotyper.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/BaseRecalibrator4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/GenomicsDBImport4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/Abstract.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/ValidateVariants4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/__init__.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 copying RouToolPa/Tools/GATK4/CombineVariants4.py -> build/lib/RouToolPa/Tools/GATK4 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/Barrnap.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/BUSCO.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/GlimerHMM.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/Exonerate.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/VEP.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/Emapper.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/SNPeff.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/AUGUSTUS.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/__init__.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 copying RouToolPa/Tools/Annotation/TransDecoder.py -> build/lib/RouToolPa/Tools/Annotation 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/PacBio 2019-12-05T07:37:11 copying RouToolPa/Tools/PacBio/SMRTLink4.py -> build/lib/RouToolPa/Tools/PacBio 2019-12-05T07:37:11 copying RouToolPa/Tools/PacBio/__init__.py -> build/lib/RouToolPa/Tools/PacBio 2019-12-05T07:37:11 creating build/lib/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:11 copying RouToolPa/Tools/Evolution/PAML/MCMCTree.py -> build/lib/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:11 copying RouToolPa/Tools/Evolution/PAML/Codeml.py -> build/lib/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:11 copying RouToolPa/Tools/Evolution/PAML/__init__.py -> build/lib/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:11 installing to build/bdist.linux-armv7l/wheel 2019-12-05T07:37:11 running install 2019-12-05T07:37:11 running install_lib 2019-12-05T07:37:11 creating build/bdist.linux-armv7l 2019-12-05T07:37:11 creating build/bdist.linux-armv7l/wheel 2019-12-05T07:37:11 creating build/bdist.linux-armv7l/wheel/RouToolPa 2019-12-05T07:37:11 creating build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/File.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Drawing.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Evolution.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/TreeFam.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/MtDNA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Ensembl.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/VCF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/NCBI.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Project.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Tree.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Phylogenetics.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Annotations.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/EggNOG.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Fastq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/GO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Math.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:11 copying build/lib/RouToolPa/Routines/Sequence.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/Alignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/MultipleAlignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/Expression.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/SequenceCluster.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/Primer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/Pacbio.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/Matplotlib.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 copying build/lib/RouToolPa/Routines/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Routines 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/RepeatMasking/TRF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatScout.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatMasker.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/RepeatMasking/RepeatModeler.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/RepeatMasking/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/RepeatMasking 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/RepeatSearchTools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/BLAST/BLAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/BLAST/BLASTPlus.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/BLAST/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BLAST 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/EMPHF/EMPHF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/EMPHF/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/EMPHF 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Kmers/Jellyfish.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Kmers/GenomeTester4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Kmers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Kmers 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Scaffolders/SSPACE.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Scaffolders/LRNAScaffolder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Scaffolders/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Scaffolders 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Picard/SortVcf.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Picard/CreateSequenceDictionary.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Picard/AddOrReplaceReadGroups.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Picard/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Picard 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Primers/Primer3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Primers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Primers 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/BioFormats/BioConvert.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/BioFormats/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/BioFormats 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GapClosers/GapFiller.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GapClosers/Sealer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GapClosers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GapClosers 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/AIndex/AIndex.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/AIndex/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/AIndex 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Picard.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Population/PSMC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Population/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Population/PLINK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Population 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/CombineVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/FastaAlternateReferenceMaker.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/AnalyzeCovariates.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/BaseRecalibrator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/ValidateVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/ApplyRecalibration.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/VariantFiltration.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/RealignerTargetCreator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/HaplotypeCaller.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/VariantRecalibrator.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/UnifiedGenotyper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/CatVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/GenotypeGVCFs.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/IndelRealigner.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/PrintReads.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/GATK/SelectVariants.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/ExaBayes.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/MrBayes.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/PartitionFinder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/ExaML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/RAxML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Phylogenetics/Gblocks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Phylogenetics 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/DISCOVAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/Fermi.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/Spades.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/Supernova.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/BionanoSolve.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/MaSuRCA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/PEAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/Platanus.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Assemblers/Quast.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Assemblers 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/LinuxTools/CGAS.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/LinuxTools/Valgrind.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/LinuxTools/Download.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/LinuxTools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/LinuxTools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/AssemblyTools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/MultipleAlignment/SWAMP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/MultipleAlignment/GUIDANCE2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/MultipleAlignment/PRANK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/MultipleAlignment/MAFFT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/MultipleAlignment/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/MultipleAlignment 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/ImageMagick/Convert.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/ImageMagick/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/ImageMagick 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Expression/Cufflinks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Expression/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Expression/HTSeq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Expression/Subread.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Expression 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Samtools/Samtools.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Samtools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Samtools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Evolution/PAML/MCMCTree.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Evolution/PAML/Codeml.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Evolution/PAML/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution/PAML 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Evolution/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Evolution 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Stirka/Trimmer.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Stirka/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Stirka 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/MaskFasta.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/GetFasta.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/Flank.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/Intersect.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/GenomeCov.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/BamToFastq.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Bedtools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Bedtools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/HMMER/HMMER3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/HMMER/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/HMMER 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Clustering/CDHit.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Clustering/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Clustering 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/Tophat.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/Bowtie2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/TMAP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/GMAP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/STAR.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/LongRanger.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/BWA.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/Novoalign.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/BLAT.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/GEM.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Alignment/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Alignment 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/SRAToolkit/FastqDump.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/SRAToolkit/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/SRAToolkit 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/Clumpify.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/FaCut.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/NextClip.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/Adapters.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/FastQC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/TrimGalore.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/Trimmomatic.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/Cutadapt.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/Filter/Cookiecutter.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Filter 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/TVC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:12 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA 2019-12-05T07:37:12 copying build/lib/RouToolPa/Tools/WGA/LAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/WGA/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/WGA 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/GenotypeGVCFs4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/VariantFiltration4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/FastaAlternateReferenceMaker4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/SelectVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/AnalyzeCovariates4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/HaplotypeCaller4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/SortVcf4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/CombineGVCFs4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/UnifiedGenotyper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/BaseRecalibrator4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/GenomicsDBImport4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/ValidateVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/GATK4/CombineVariants4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/GATK4 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/Barrnap.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/BUSCO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/GlimerHMM.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/Exonerate.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/VEP.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/Emapper.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/SNPeff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/AUGUSTUS.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/Annotation/TransDecoder.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/Annotation 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/PacBio/SMRTLink4.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio 2019-12-05T07:37:13 copying build/lib/RouToolPa/Tools/PacBio/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Tools/PacBio 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2019-12-05T07:37:13 copying build/lib/RouToolPa/Formats/VariantFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2019-12-05T07:37:13 copying build/lib/RouToolPa/Formats/AlignmentFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2019-12-05T07:37:13 copying build/lib/RouToolPa/Formats/AnnotationFormats.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2019-12-05T07:37:13 copying build/lib/RouToolPa/Formats/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Formats 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa/Collections 2019-12-05T07:37:13 copying build/lib/RouToolPa/Collections/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Collections 2019-12-05T07:37:13 copying build/lib/RouToolPa/Collections/General.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Collections 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Barrnap.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/GFF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/BUSCO.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/BLAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/LAST.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Primer3.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/CAFE.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/TRF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Haploview.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/VCF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/FaCut.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/GVF.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/R.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/KrATER.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/DESeq2.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Sequence.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/CCFOld.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/MultipleAlignment.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/HGMD.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Dovetail.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Coockiecutter.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Cufflinks.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/VCFOld.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/SNPeff.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/FastQC.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Abstract.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/PAML.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/Trimmomatic.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/PLINK.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/Parsers/General.py -> build/bdist.linux-armv7l/wheel/RouToolPa/Parsers 2019-12-05T07:37:13 copying build/lib/RouToolPa/__init__.py -> build/bdist.linux-armv7l/wheel/RouToolPa 2019-12-05T07:37:13 running install_egg_info 2019-12-05T07:37:13 running egg_info 2019-12-05T07:37:13 writing requirements to RouToolPa.egg-info/requires.txt 2019-12-05T07:37:13 writing top-level names to RouToolPa.egg-info/top_level.txt 2019-12-05T07:37:13 writing RouToolPa.egg-info/PKG-INFO 2019-12-05T07:37:13 writing dependency_links to RouToolPa.egg-info/dependency_links.txt 2019-12-05T07:37:13 reading manifest file 'RouToolPa.egg-info/SOURCES.txt' 2019-12-05T07:37:13 writing manifest file 'RouToolPa.egg-info/SOURCES.txt' 2019-12-05T07:37:13 Copying RouToolPa.egg-info to build/bdist.linux-armv7l/wheel/RouToolPa-0.85-py3.5.egg-info 2019-12-05T07:37:13 running install_scripts 2019-12-05T07:37:13 creating build/bdist.linux-armv7l/wheel/RouToolPa-0.85.dist-info/WHEEL 2019-12-05T07:37:15 Building wheel for RouToolPa (setup.py): finished with status 'done' 2019-12-05T07:37:15 Stored in directory: /tmp/tmpdrzh9elm 2019-12-05T07:37:15 Successfully built RouToolPa 2019-12-05T07:37:15 Cleaning up... 2019-12-05T07:37:15 Removing source in /tmp/pip-wheel-3ehfwcue/RouToolPa 2019-12-05T07:37:16 Removed build tracker '/tmp/pip-req-tracker-fx9u7er5'