2019-12-13T20:19:06 Created temporary directory: /tmp/pip-ephem-wheel-cache-3_6nkyht 2019-12-13T20:19:06 Created temporary directory: /tmp/pip-req-tracker-ean9pfnn 2019-12-13T20:19:06 Created requirements tracker '/tmp/pip-req-tracker-ean9pfnn' 2019-12-13T20:19:06 Created temporary directory: /tmp/pip-wheel-46j0w4et 2019-12-13T20:19:06 Collecting TEtranscripts==2.1.1 2019-12-13T20:19:06 1 location(s) to search for versions of TEtranscripts: 2019-12-13T20:19:06 * https://pypi.org/simple/tetranscripts/ 2019-12-13T20:19:06 Getting page https://pypi.org/simple/tetranscripts/ 2019-12-13T20:19:06 Analyzing links from page https://pypi.org/simple/tetranscripts/ 2019-12-13T20:19:06 Skipping link https://files.pythonhosted.org/packages/31/61/34e7ab36639f60d9296d32d24ad103ce9d1781a43f748af4257bdffca06f/TEtranscripts-2.0.4-py2-none-any.whl#sha256=4878dd229eedff32b41134d5e064dfbb72712f5078c6646a23fa26876ba86cc4 (from https://pypi.org/simple/tetranscripts/); it is not compatible with this Python 2019-12-13T20:19:06 Found link https://files.pythonhosted.org/packages/a6/65/13b271f89f957d0d5244b23cd3b8d82232c764718cf39efb919239194516/TEtranscripts-2.0.4.tar.gz#sha256=eeccacb676558a9c5429adca8f9f85fa0bc3a88b9164fb096243d6b8f9a5923a (from https://pypi.org/simple/tetranscripts/), version: 2.0.4 2019-12-13T20:19:06 Found link https://files.pythonhosted.org/packages/61/c8/ae78d2f8de688be200b33d7c69bbc9814718543ce44b79e25335c2dd36d8/TEtranscripts-2.0.5.tar.gz#sha256=d58c00475fc6e171095c639fdd1634f742378f0885cd4621ef137bc1fbc3e193 (from https://pypi.org/simple/tetranscripts/), version: 2.0.5 2019-12-13T20:19:06 Found link https://files.pythonhosted.org/packages/d4/52/afde9894514bfa59b85e14140a04956467dfd44c8b0016c50544d970312b/TEtranscripts-2.1.0.tar.gz#sha256=b8ac3c0d343c69538e4eda6bae8221f64edfbd67c793aa8e0c9e9d85305272ce (from https://pypi.org/simple/tetranscripts/), version: 2.1.0 2019-12-13T20:19:06 Found link https://files.pythonhosted.org/packages/3c/f3/bc59e3b4698866ee3bca10b59d185013d92240e01be562702e3ccafe78e4/TEtranscripts-2.1.1.tar.gz#sha256=4359753ab7e3f58342853e2db5e9b52ca2c810d379d90ee27ab1fc096d9e2e46 (from https://pypi.org/simple/tetranscripts/), version: 2.1.1 2019-12-13T20:19:06 Using version 2.1.1 (newest of versions: 2.1.1) 2019-12-13T20:19:06 Created temporary directory: /tmp/pip-unpack-ovwzgmpr 2019-12-13T20:19:06 Downloading https://files.pythonhosted.org/packages/3c/f3/bc59e3b4698866ee3bca10b59d185013d92240e01be562702e3ccafe78e4/TEtranscripts-2.1.1.tar.gz (112kB) 2019-12-13T20:19:06 Downloading from URL https://files.pythonhosted.org/packages/3c/f3/bc59e3b4698866ee3bca10b59d185013d92240e01be562702e3ccafe78e4/TEtranscripts-2.1.1.tar.gz#sha256=4359753ab7e3f58342853e2db5e9b52ca2c810d379d90ee27ab1fc096d9e2e46 (from https://pypi.org/simple/tetranscripts/) 2019-12-13T20:19:07 Added TEtranscripts==2.1.1 from https://files.pythonhosted.org/packages/3c/f3/bc59e3b4698866ee3bca10b59d185013d92240e01be562702e3ccafe78e4/TEtranscripts-2.1.1.tar.gz#sha256=4359753ab7e3f58342853e2db5e9b52ca2c810d379d90ee27ab1fc096d9e2e46 to build tracker '/tmp/pip-req-tracker-ean9pfnn' 2019-12-13T20:19:07 Running setup.py (path:/tmp/pip-wheel-46j0w4et/TEtranscripts/setup.py) egg_info for package TEtranscripts 2019-12-13T20:19:07 Running command python setup.py egg_info 2019-12-13T20:19:09 running egg_info 2019-12-13T20:19:09 creating pip-egg-info/TEtranscripts.egg-info 2019-12-13T20:19:09 writing pip-egg-info/TEtranscripts.egg-info/PKG-INFO 2019-12-13T20:19:09 writing dependency_links to pip-egg-info/TEtranscripts.egg-info/dependency_links.txt 2019-12-13T20:19:09 writing top-level names to pip-egg-info/TEtranscripts.egg-info/top_level.txt 2019-12-13T20:19:09 writing requirements to pip-egg-info/TEtranscripts.egg-info/requires.txt 2019-12-13T20:19:09 writing manifest file 'pip-egg-info/TEtranscripts.egg-info/SOURCES.txt' 2019-12-13T20:19:09 reading manifest file 'pip-egg-info/TEtranscripts.egg-info/SOURCES.txt' 2019-12-13T20:19:09 reading manifest template 'MANIFEST.in' 2019-12-13T20:19:09 writing manifest file 'pip-egg-info/TEtranscripts.egg-info/SOURCES.txt' 2019-12-13T20:19:09 Source in /tmp/pip-wheel-46j0w4et/TEtranscripts has version 2.1.1, which satisfies requirement TEtranscripts==2.1.1 from https://files.pythonhosted.org/packages/3c/f3/bc59e3b4698866ee3bca10b59d185013d92240e01be562702e3ccafe78e4/TEtranscripts-2.1.1.tar.gz#sha256=4359753ab7e3f58342853e2db5e9b52ca2c810d379d90ee27ab1fc096d9e2e46 2019-12-13T20:19:09 Removed TEtranscripts==2.1.1 from https://files.pythonhosted.org/packages/3c/f3/bc59e3b4698866ee3bca10b59d185013d92240e01be562702e3ccafe78e4/TEtranscripts-2.1.1.tar.gz#sha256=4359753ab7e3f58342853e2db5e9b52ca2c810d379d90ee27ab1fc096d9e2e46 from build tracker '/tmp/pip-req-tracker-ean9pfnn' 2019-12-13T20:19:09 Building wheels for collected packages: TEtranscripts 2019-12-13T20:19:09 Created temporary directory: /tmp/pip-wheel-q61hzxrp 2019-12-13T20:19:09 Building wheel for TEtranscripts (setup.py): started 2019-12-13T20:19:09 Destination directory: /tmp/pip-wheel-q61hzxrp 2019-12-13T20:19:09 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-46j0w4et/TEtranscripts/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-q61hzxrp 2019-12-13T20:19:11 running bdist_wheel 2019-12-13T20:19:11 running build 2019-12-13T20:19:11 running build_py 2019-12-13T20:19:12 creating build 2019-12-13T20:19:12 creating build/lib 2019-12-13T20:19:12 creating build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/TEindex.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/GeneFeatures.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/Common.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/Normalization.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/IntervalTree.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/Prob.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/Constants.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/__init__.py -> build/lib/TEToolkit 2019-12-13T20:19:12 copying TEToolkit/EMAlgorithm.py -> build/lib/TEToolkit 2019-12-13T20:19:12 creating build/lib/TEToolkit/IO 2019-12-13T20:19:12 copying TEToolkit/IO/ReadInputs.py -> build/lib/TEToolkit/IO 2019-12-13T20:19:12 copying TEToolkit/IO/__init__.py -> build/lib/TEToolkit/IO 2019-12-13T20:19:12 copying TEToolkit/IO/FeatIO.py -> build/lib/TEToolkit/IO 2019-12-13T20:19:12 creating build/lib/TEToolkit/ShortRead 2019-12-13T20:19:12 copying TEToolkit/ShortRead/ParseBEDFile.py -> build/lib/TEToolkit/ShortRead 2019-12-13T20:19:12 copying TEToolkit/ShortRead/__init__.py -> build/lib/TEToolkit/ShortRead 2019-12-13T20:19:12 running egg_info 2019-12-13T20:19:12 writing requirements to TEtranscripts.egg-info/requires.txt 2019-12-13T20:19:12 writing top-level names to TEtranscripts.egg-info/top_level.txt 2019-12-13T20:19:12 writing dependency_links to TEtranscripts.egg-info/dependency_links.txt 2019-12-13T20:19:12 writing TEtranscripts.egg-info/PKG-INFO 2019-12-13T20:19:12 reading manifest file 'TEtranscripts.egg-info/SOURCES.txt' 2019-12-13T20:19:12 reading manifest template 'MANIFEST.in' 2019-12-13T20:19:12 writing manifest file 'TEtranscripts.egg-info/SOURCES.txt' 2019-12-13T20:19:12 copying TEToolkit/IO/FeatIO.pyc -> build/lib/TEToolkit/IO 2019-12-13T20:19:12 copying TEToolkit/IO/ReadInputs.pyc -> build/lib/TEToolkit/IO 2019-12-13T20:19:12 copying TEToolkit/IO/__init__.pyc -> build/lib/TEToolkit/IO 2019-12-13T20:19:12 copying TEToolkit/ShortRead/ParseBEDFile.pyc -> build/lib/TEToolkit/ShortRead 2019-12-13T20:19:12 copying TEToolkit/ShortRead/__init__.pyc -> build/lib/TEToolkit/ShortRead 2019-12-13T20:19:12 running build_scripts 2019-12-13T20:19:12 creating build/scripts-3.5 2019-12-13T20:19:12 copying and adjusting bin/TEtranscripts -> build/scripts-3.5 2019-12-13T20:19:12 copying and adjusting bin/TEcount -> build/scripts-3.5 2019-12-13T20:19:12 changing mode of build/scripts-3.5/TEtranscripts from 644 to 755 2019-12-13T20:19:12 changing mode of build/scripts-3.5/TEcount from 644 to 755 2019-12-13T20:19:12 installing to build/bdist.linux-armv7l/wheel 2019-12-13T20:19:12 running install 2019-12-13T20:19:12 running install_lib 2019-12-13T20:19:12 creating build/bdist.linux-armv7l 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/TEindex.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/GeneFeatures.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/Common.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/Normalization.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IO/FeatIO.pyc -> build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IO/__init__.pyc -> build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IO/ReadInputs.py -> build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IO/ReadInputs.pyc -> build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IO/__init__.py -> build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IO/FeatIO.py -> build/bdist.linux-armv7l/wheel/TEToolkit/IO 2019-12-13T20:19:12 copying build/lib/TEToolkit/IntervalTree.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel/TEToolkit/ShortRead 2019-12-13T20:19:12 copying build/lib/TEToolkit/ShortRead/ParseBEDFile.py -> build/bdist.linux-armv7l/wheel/TEToolkit/ShortRead 2019-12-13T20:19:12 copying build/lib/TEToolkit/ShortRead/__init__.pyc -> build/bdist.linux-armv7l/wheel/TEToolkit/ShortRead 2019-12-13T20:19:12 copying build/lib/TEToolkit/ShortRead/ParseBEDFile.pyc -> build/bdist.linux-armv7l/wheel/TEToolkit/ShortRead 2019-12-13T20:19:12 copying build/lib/TEToolkit/ShortRead/__init__.py -> build/bdist.linux-armv7l/wheel/TEToolkit/ShortRead 2019-12-13T20:19:12 copying build/lib/TEToolkit/Prob.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/Constants.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/__init__.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 copying build/lib/TEToolkit/EMAlgorithm.py -> build/bdist.linux-armv7l/wheel/TEToolkit 2019-12-13T20:19:12 running install_egg_info 2019-12-13T20:19:12 Copying TEtranscripts.egg-info to build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1-py3.5.egg-info 2019-12-13T20:19:12 running install_scripts 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.data 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.data/scripts 2019-12-13T20:19:12 copying build/scripts-3.5/TEtranscripts -> build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.data/scripts 2019-12-13T20:19:12 copying build/scripts-3.5/TEcount -> build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.data/scripts 2019-12-13T20:19:12 changing mode of build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.data/scripts/TEtranscripts to 755 2019-12-13T20:19:12 changing mode of build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.data/scripts/TEcount to 755 2019-12-13T20:19:12 creating build/bdist.linux-armv7l/wheel/TEtranscripts-2.1.1.dist-info/WHEEL 2019-12-13T20:19:13 Building wheel for TEtranscripts (setup.py): finished with status 'done' 2019-12-13T20:19:13 Stored in directory: /tmp/tmpeo7npgxd 2019-12-13T20:19:13 Successfully built TEtranscripts 2019-12-13T20:19:13 Cleaning up... 2019-12-13T20:19:13 Removing source in /tmp/pip-wheel-46j0w4et/TEtranscripts 2019-12-13T20:19:13 Removed build tracker '/tmp/pip-req-tracker-ean9pfnn'