Created temporary directory: /tmp/pip-ephem-wheel-cache-eibx6ucl Created temporary directory: /tmp/pip-req-tracker-cd4extw6 Created requirements tracker '/tmp/pip-req-tracker-cd4extw6' Created temporary directory: /tmp/pip-wheel-92wz2ukd Collecting refgenie==0.8.2 1 location(s) to search for versions of refgenie: * https://pypi.org/simple/refgenie/ Getting page https://pypi.org/simple/refgenie/ Analyzing links from page https://pypi.org/simple/refgenie/ Found link https://files.pythonhosted.org/packages/17/54/a0cc0afa24f558e0be77f717080c10e371750e79ffb1ac501485ca4fdfea/refgenie-0.0.1.tar.gz#sha256=71d69e2c21b08e59c68c1ef46c41542faca4e91efbb46a5745e3b3e5e199882e (from https://pypi.org/simple/refgenie/), version: 0.0.1 Found link https://files.pythonhosted.org/packages/d9/ba/078d0aaadb0f9a93e9db100b377680c6308f24eef02e5b2c68376a6f4d34/refgenie-0.3.0.tar.gz#sha256=167e78d6dc3071c42ea651bdad6a8438f7b99b285a631ec79a6718ffa0ec07d1 (from https://pypi.org/simple/refgenie/), version: 0.3.0 Found link https://files.pythonhosted.org/packages/b4/22/f4d122acae18ccda74ffbc4bd9e4b02aae9d6fa0dd34f0abed84abf815da/refgenie-0.3.1.tar.gz#sha256=7acd535abaaa519d793fa3286dd03c14e65d34590d2c6bf273a108fcf07c943b (from https://pypi.org/simple/refgenie/), version: 0.3.1 Found link https://files.pythonhosted.org/packages/e6/11/e570020cef6b691bf9f2b040d18b5fed4536972b31a0bcb4ce3e7be5c2b5/refgenie-0.3.2.tar.gz#sha256=27bdf63883dc46debeb65713271247ced4276801c15c21390b9a07a34a983dd8 (from https://pypi.org/simple/refgenie/), version: 0.3.2 Found link https://files.pythonhosted.org/packages/f5/7c/baccfeed0ab702f60f27f29801089de8744793233e7e9acdcc0762f5dbe1/refgenie-0.4.0.tar.gz#sha256=aa4fb08141f881431d21eab5be1b2442aaeab385916b2a9299f2333765286b57 (from https://pypi.org/simple/refgenie/), version: 0.4.0 Found link https://files.pythonhosted.org/packages/d2/01/2ef4810d4bbfae03bfc83ec42fcad0889d266bdb07145cd15b07cec010fc/refgenie-0.4.1.tar.gz#sha256=45b3aaf1cf4cc09f36faeb39ac6aff4a80087379f4a90da36cbca8f0a9be7af4 (from https://pypi.org/simple/refgenie/), version: 0.4.1 Found link https://files.pythonhosted.org/packages/72/e8/bcdd841edaa175dca9baff44dfe19cfa9d657266695413453c7fa3750040/refgenie-0.4.2.tar.gz#sha256=970132fa7d93b42457e9bffed9dceb816d0b8033825054e73da8c055d93cd326 (from https://pypi.org/simple/refgenie/), version: 0.4.2 Found link https://files.pythonhosted.org/packages/eb/0b/0f524131a16ed7f61525207b33961195a024c02b297945e0b8a2e1e00610/refgenie-0.4.3.tar.gz#sha256=1b58f786ec82a9b2504f809d903f012e283758148ed94fdc430adbcbe7794f71 (from https://pypi.org/simple/refgenie/), version: 0.4.3 Found link https://files.pythonhosted.org/packages/70/83/55da1456345a0aa79188f7dbe5fc40cc926b218c969d371aa91cde4857e4/refgenie-0.4.4.tar.gz#sha256=89d7edcb304a3ca966b158748d366e9e12fdc1ce296b3397d16c6f65eaf7d25b (from https://pypi.org/simple/refgenie/), version: 0.4.4 Found link https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14 (from https://pypi.org/simple/refgenie/), version: 0.5.0 Found link https://files.pythonhosted.org/packages/65/98/f8e654ecf4c3f151d7b2ff7a7d8fbbd5f25de1a6b4d32e5c9897910d2ae6/refgenie-0.6.0.tar.gz#sha256=585feade22c891a9f98d3e8e0d4f666696af6ae941c3e5731e438956e35a7877 (from https://pypi.org/simple/refgenie/), version: 0.6.0 Found link https://files.pythonhosted.org/packages/c3/e1/1d9fcb262828ca2f82dd12aae59af7816059abfffbb0021128fdf9a9b5fb/refgenie-0.7.0.tar.gz#sha256=75cb7a9412d4e93b933989602939f79fff5c8910bec2651ad0f7f97dc7d57de5 (from https://pypi.org/simple/refgenie/), version: 0.7.0 Found link https://files.pythonhosted.org/packages/a6/ea/cd1485a9f10db3b79601088efaf3929858813f46c906548ba47f0dcab9a6/refgenie-0.7.1.tar.gz#sha256=1d391357b82f9e05a71b945666c33c013e6ef2207a0e794ee33f602f433916ad (from https://pypi.org/simple/refgenie/), version: 0.7.1 Found link https://files.pythonhosted.org/packages/b2/19/d8233d168bc5f5dfb189bca53165dcb3120e1ca120a18a3f8f89727a5106/refgenie-0.7.2.tar.gz#sha256=5f2a57c41bbb9eba549757df57c533b9b98c7c3cc7feb0cc04a670a15291405b (from https://pypi.org/simple/refgenie/), version: 0.7.2 Found link https://files.pythonhosted.org/packages/03/46/91c1cf4d4cee5d4caaf83337c4d1246b283e7abf389fdb2486109acb7b03/refgenie-0.8.0.tar.gz#sha256=70fbaad444149f10f1153588399a67254d1f3f39b1505d48b5f77e3457aa9c24 (from https://pypi.org/simple/refgenie/), version: 0.8.0 Found link https://files.pythonhosted.org/packages/c3/65/11c4c959aa5cfeb06b90023bd09da1d2ea22b07f8c311bb560da8ac5306f/refgenie-0.8.1.tar.gz#sha256=4f507780c08809fbfd64554f76fa17e6bc83b76f0612767a487a62e8b827aa38 (from https://pypi.org/simple/refgenie/), version: 0.8.1 Found link https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz#sha256=dca32279f3021fe7a5318b834cb9e5c36eda12a6d86f99f01ee174ebe79de60c (from https://pypi.org/simple/refgenie/), version: 0.8.2 Using version 0.8.2 (newest of versions: 0.8.2) Created temporary directory: /tmp/pip-unpack-4twqpbzo Downloading https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz Downloading from URL https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz#sha256=dca32279f3021fe7a5318b834cb9e5c36eda12a6d86f99f01ee174ebe79de60c (from https://pypi.org/simple/refgenie/) Added refgenie==0.8.2 from https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz#sha256=dca32279f3021fe7a5318b834cb9e5c36eda12a6d86f99f01ee174ebe79de60c to build tracker '/tmp/pip-req-tracker-cd4extw6' Running setup.py (path:/tmp/pip-wheel-92wz2ukd/refgenie/setup.py) egg_info for package refgenie Running command python setup.py egg_info running egg_info creating pip-egg-info/refgenie.egg-info writing dependency_links to pip-egg-info/refgenie.egg-info/dependency_links.txt writing requirements to pip-egg-info/refgenie.egg-info/requires.txt writing pip-egg-info/refgenie.egg-info/PKG-INFO writing top-level names to pip-egg-info/refgenie.egg-info/top_level.txt writing entry points to pip-egg-info/refgenie.egg-info/entry_points.txt writing manifest file 'pip-egg-info/refgenie.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/refgenie.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/refgenie.egg-info/SOURCES.txt' Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- Warning: pandoc conversion failed! Source in /tmp/pip-wheel-92wz2ukd/refgenie has version 0.8.2, which satisfies requirement refgenie==0.8.2 from https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz#sha256=dca32279f3021fe7a5318b834cb9e5c36eda12a6d86f99f01ee174ebe79de60c Removed refgenie==0.8.2 from https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz#sha256=dca32279f3021fe7a5318b834cb9e5c36eda12a6d86f99f01ee174ebe79de60c from build tracker '/tmp/pip-req-tracker-cd4extw6' Building wheels for collected packages: refgenie Created temporary directory: /tmp/pip-wheel-pt1folen Running setup.py bdist_wheel for refgenie: started Destination directory: /tmp/pip-wheel-pt1folen Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-92wz2ukd/refgenie/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-pt1folen Maybe try: sudo apt-get install pandoc See http://johnmacfarlane.net/pandoc/installing.html for installation options --------------------------------------------------------------- running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/refgenie copying refgenie/exceptions.py -> build/lib/refgenie copying refgenie/add_assets_igenome.py -> build/lib/refgenie copying refgenie/__init__.py -> build/lib/refgenie copying refgenie/asset_build_packages.py -> build/lib/refgenie copying refgenie/refget.py -> build/lib/refgenie copying refgenie/_version.py -> build/lib/refgenie copying refgenie/refgenie.py -> build/lib/refgenie copying refgenie/build_all_genome.py -> build/lib/refgenie copying refgenie/const.py -> build/lib/refgenie running egg_info writing refgenie.egg-info/PKG-INFO writing dependency_links to refgenie.egg-info/dependency_links.txt writing requirements to refgenie.egg-info/requires.txt writing entry points to refgenie.egg-info/entry_points.txt writing top-level names to refgenie.egg-info/top_level.txt reading manifest file 'refgenie.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'refgenie.egg-info/SOURCES.txt' copying refgenie/refgenie.yaml -> build/lib/refgenie Fixing build/lib/refgenie/exceptions.py build/lib/refgenie/add_assets_igenome.py build/lib/refgenie/__init__.py build/lib/refgenie/asset_build_packages.py build/lib/refgenie/refget.py build/lib/refgenie/_version.py build/lib/refgenie/refgenie.py build/lib/refgenie/build_all_genome.py build/lib/refgenie/const.py Skipping implicit fixer: buffer Skipping implicit fixer: idioms Skipping implicit fixer: set_literal Skipping implicit fixer: ws_comma Fixing build/lib/refgenie/exceptions.py build/lib/refgenie/add_assets_igenome.py build/lib/refgenie/__init__.py build/lib/refgenie/asset_build_packages.py build/lib/refgenie/refget.py build/lib/refgenie/_version.py build/lib/refgenie/refgenie.py build/lib/refgenie/build_all_genome.py build/lib/refgenie/const.py Skipping implicit fixer: buffer Skipping implicit fixer: idioms Skipping implicit fixer: set_literal Skipping implicit fixer: ws_comma installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/exceptions.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/add_assets_igenome.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/__init__.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/asset_build_packages.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/refget.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/_version.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/refgenie.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/build_all_genome.py -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/refgenie.yaml -> build/bdist.linux-armv7l/wheel/refgenie copying build/lib/refgenie/const.py -> build/bdist.linux-armv7l/wheel/refgenie running install_egg_info Copying refgenie.egg-info to build/bdist.linux-armv7l/wheel/refgenie-0.8.2-py3.4.egg-info running install_scripts adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/refgenie-0.8.2.dist-info/WHEEL creating '/tmp/pip-wheel-pt1folen/refgenie-0.8.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'refgenie/__init__.py' adding 'refgenie/_version.py' adding 'refgenie/add_assets_igenome.py' adding 'refgenie/asset_build_packages.py' adding 'refgenie/build_all_genome.py' adding 'refgenie/const.py' adding 'refgenie/exceptions.py' adding 'refgenie/refgenie.py' adding 'refgenie/refgenie.yaml' adding 'refgenie/refget.py' adding 'refgenie-0.8.2.dist-info/LICENSE.txt' adding 'refgenie-0.8.2.dist-info/METADATA' adding 'refgenie-0.8.2.dist-info/WHEEL' adding 'refgenie-0.8.2.dist-info/entry_points.txt' adding 'refgenie-0.8.2.dist-info/top_level.txt' adding 'refgenie-0.8.2.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Warning: pandoc conversion failed! Running setup.py bdist_wheel for refgenie: finished with status 'done' Stored in directory: /tmp/tmpeq4gc6fs Successfully built refgenie Cleaning up... Removing source in /tmp/pip-wheel-92wz2ukd/refgenie Removed build tracker '/tmp/pip-req-tracker-cd4extw6'