2020-01-10T22:51:15 Created temporary directory: /tmp/pip-ephem-wheel-cache-wsszcemi
2020-01-10T22:51:15 Created temporary directory: /tmp/pip-req-tracker-glzqooq0
2020-01-10T22:51:15 Created requirements tracker '/tmp/pip-req-tracker-glzqooq0'
2020-01-10T22:51:15 Created temporary directory: /tmp/pip-wheel-alavskqa
2020-01-10T22:51:15 Collecting py-popgen==0.1.3
2020-01-10T22:51:15   1 location(s) to search for versions of py-popgen:
2020-01-10T22:51:15   * https://pypi.org/simple/py-popgen/
2020-01-10T22:51:15   Getting page https://pypi.org/simple/py-popgen/
2020-01-10T22:51:15   Analyzing links from page https://pypi.org/simple/py-popgen/
2020-01-10T22:51:15     Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz#sha256=c95c719e8e1536b59b32fd617118d8374e8b4438ec114d1fc48704ccf9ccaf9a (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2020-01-10T22:51:15     Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz#sha256=150557350080571d2db292b647478c80bfe7bfd81a3750db368276e613fae36d (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2020-01-10T22:51:15     Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2020-01-10T22:51:15     Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2020-01-10T22:51:15     Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz#sha256=29493332c6131f297c20575b30e7a15ee2782dd517cb6bd7c3e25bd06f38e37e (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2020-01-10T22:51:15     Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2020-01-10T22:51:15   Using version 0.1.3 (newest of versions: 0.1.3)
2020-01-10T22:51:15   Created temporary directory: /tmp/pip-unpack-3gz_wpwh
2020-01-10T22:51:16   Downloading https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (26.9MB)
2020-01-10T22:51:16   Downloading from URL https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2020-01-10T22:51:26   Added py-popgen==0.1.3 from https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b to build tracker '/tmp/pip-req-tracker-glzqooq0'
2020-01-10T22:51:26     Running setup.py (path:/tmp/pip-wheel-alavskqa/py-popgen/setup.py) egg_info for package py-popgen
2020-01-10T22:51:26     Running command python setup.py egg_info
2020-01-10T22:51:29     running egg_info
2020-01-10T22:51:29     creating pip-egg-info/py_popgen.egg-info
2020-01-10T22:51:29     writing pip-egg-info/py_popgen.egg-info/PKG-INFO
2020-01-10T22:51:29     writing dependency_links to pip-egg-info/py_popgen.egg-info/dependency_links.txt
2020-01-10T22:51:29     writing requirements to pip-egg-info/py_popgen.egg-info/requires.txt
2020-01-10T22:51:29     writing top-level names to pip-egg-info/py_popgen.egg-info/top_level.txt
2020-01-10T22:51:29     writing manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-01-10T22:51:29     reading manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-01-10T22:51:29     reading manifest template 'MANIFEST.in'
2020-01-10T22:51:29     writing manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-01-10T22:51:29   Source in /tmp/pip-wheel-alavskqa/py-popgen has version 0.1.3, which satisfies requirement py-popgen==0.1.3 from https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b
2020-01-10T22:51:29   Removed py-popgen==0.1.3 from https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b from build tracker '/tmp/pip-req-tracker-glzqooq0'
2020-01-10T22:51:29 Building wheels for collected packages: py-popgen
2020-01-10T22:51:29   Created temporary directory: /tmp/pip-wheel-x_fxd5p2
2020-01-10T22:51:29   Building wheel for py-popgen (setup.py): started
2020-01-10T22:51:29   Destination directory: /tmp/pip-wheel-x_fxd5p2
2020-01-10T22:51:29   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-alavskqa/py-popgen/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x_fxd5p2
2020-01-10T22:51:32   running bdist_wheel
2020-01-10T22:51:32   running build
2020-01-10T22:51:32   running build_py
2020-01-10T22:51:32   creating build
2020-01-10T22:51:32   creating build/lib.linux-armv7l-3.7
2020-01-10T22:51:32   creating build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/bed_utilities.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/misc.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/beagle.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/__init__.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/plink.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/admixture.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/picard.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/model.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/fasta.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/convert.py -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   running egg_info
2020-01-10T22:51:32   writing py_popgen.egg-info/PKG-INFO
2020-01-10T22:51:32   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2020-01-10T22:51:32   writing requirements to py_popgen.egg-info/requires.txt
2020-01-10T22:51:32   writing top-level names to py_popgen.egg-info/top_level.txt
2020-01-10T22:51:32   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-01-10T22:51:32   reading manifest template 'MANIFEST.in'
2020-01-10T22:51:32   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-01-10T22:51:32   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   running build_ext
2020-01-10T22:51:32   building 'pgpipe.test_cython' extension
2020-01-10T22:51:32   creating build/temp.linux-armv7l-3.7
2020-01-10T22:51:32   creating build/temp.linux-armv7l-3.7/pgpipe
2020-01-10T22:51:32   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c pgpipe/test_cython.c -o build/temp.linux-armv7l-3.7/pgpipe/test_cython.o
2020-01-10T22:51:33   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2020-01-10T22:51:33   pgpipe/test_cython.c:1438:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2020-01-10T22:51:33          (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2020-01-10T22:51:33                    ^
2020-01-10T22:51:33   pgpipe/test_cython.c:1438:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2020-01-10T22:51:33          (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2020-01-10T22:51:33                                              ^
2020-01-10T22:51:33   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2020-01-10T22:51:33   pgpipe/test_cython.c:1854:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2020-01-10T22:51:33          (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2020-01-10T22:51:33                    ^
2020-01-10T22:51:33   pgpipe/test_cython.c:1854:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2020-01-10T22:51:33          (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2020-01-10T22:51:33                                              ^
2020-01-10T22:51:36   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pgpipe/test_cython.o -o build/lib.linux-armv7l-3.7/pgpipe/test_cython.cpython-37m-arm-linux-gnueabihf.so
2020-01-10T22:51:36   running build_scripts
2020-01-10T22:51:36   creating build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.7
2020-01-10T22:51:36   copying pgpipe/four_gamete.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/bed_utilities.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/convert.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/admixture.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.7
2020-01-10T22:51:36   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.7
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_calc.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_split.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_phase.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/four_gamete.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/stat_sampler.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/bed_utilities.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/informative_loci_filter.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/convert.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_to_ima.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/admixture.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/plink_ld.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/ima3_wrapper.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/eigenstrat_fstats.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_liftover.py from 644 to 755
2020-01-10T22:51:36   changing mode of build/scripts-3.7/vcf_utilities.py from 644 to 755
2020-01-10T22:51:36   installing to build/bdist.linux-armv7l/wheel
2020-01-10T22:51:36   running install
2020-01-10T22:51:36   running install_lib
2020-01-10T22:51:36   creating build/bdist.linux-armv7l
2020-01-10T22:51:36   creating build/bdist.linux-armv7l/wheel
2020-01-10T22:51:36   creating build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/bed_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/misc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/test_cython.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   copying build/lib.linux-armv7l-3.7/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-10T22:51:36   running install_egg_info
2020-01-10T22:51:36   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.3-py3.7.egg-info
2020-01-10T22:51:36   running install_scripts
2020-01-10T22:51:36   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data
2020-01-10T22:51:36   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/bed_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   copying build/scripts-3.7/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/bed_utilities.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/ima3_wrapper.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_utilities.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/stat_sampler.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_to_ima.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_calc.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_liftover.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/informative_loci_filter.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_split.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/eigenstrat_fstats.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_phase.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_filter.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/admixture.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/plink_ld.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/four_gamete.py to 755
2020-01-10T22:51:36   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/convert.py to 755
2020-01-10T22:51:36   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.dist-info/WHEEL
2020-01-10T22:51:36   creating '/tmp/pip-wheel-x_fxd5p2/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-01-10T22:51:36   adding 'pgpipe/__init__.py'
2020-01-10T22:51:36   adding 'pgpipe/admixtools.py'
2020-01-10T22:51:36   adding 'pgpipe/admixture.py'
2020-01-10T22:51:36   adding 'pgpipe/argparse_sets.py'
2020-01-10T22:51:36   adding 'pgpipe/bcftools.py'
2020-01-10T22:51:36   adding 'pgpipe/beagle.py'
2020-01-10T22:51:36   adding 'pgpipe/bed_invert.py'
2020-01-10T22:51:36   adding 'pgpipe/bed_utilities.py'
2020-01-10T22:51:36   adding 'pgpipe/bedtools.py'
2020-01-10T22:51:36   adding 'pgpipe/convert.py'
2020-01-10T22:51:36   adding 'pgpipe/eigenstrat_fstats.py'
2020-01-10T22:51:36   adding 'pgpipe/extend_loci.py'
2020-01-10T22:51:36   adding 'pgpipe/fasta.py'
2020-01-10T22:51:36   adding 'pgpipe/fasta_utilities.py'
2020-01-10T22:51:36   adding 'pgpipe/filter_single_vcf.py'
2020-01-10T22:51:36   adding 'pgpipe/four_gamete.py'
2020-01-10T22:51:36   adding 'pgpipe/genome_region.py'
2020-01-10T22:51:36   adding 'pgpipe/get_nonmissing_chunks.py'
2020-01-10T22:51:36   adding 'pgpipe/graph_plotter.py'
2020-01-10T22:51:36   adding 'pgpipe/ima3_wrapper.py'
2020-01-10T22:51:36   adding 'pgpipe/ima_priors.py'
2020-01-10T22:51:36   adding 'pgpipe/ima_to_treemix.py'
2020-01-10T22:51:36   adding 'pgpipe/informative_loci_filter.py'
2020-01-10T22:51:36   adding 'pgpipe/logging_module.py'
2020-01-10T22:51:36   adding 'pgpipe/min_pop_filter.py'
2020-01-10T22:51:36   adding 'pgpipe/misc.py'
2020-01-10T22:51:36   adding 'pgpipe/model.py'
2020-01-10T22:51:36   adding 'pgpipe/model_creator.py'
2020-01-10T22:51:36   adding 'pgpipe/model_sampler.py'
2020-01-10T22:51:36   adding 'pgpipe/parse_functions.py'
2020-01-10T22:51:36   adding 'pgpipe/picard.py'
2020-01-10T22:51:36   adding 'pgpipe/plink.py'
2020-01-10T22:51:36   adding 'pgpipe/plink_ld.py'
2020-01-10T22:51:36   adding 'pgpipe/shapeit.py'
2020-01-10T22:51:36   adding 'pgpipe/site_stats.py'
2020-01-10T22:51:36   adding 'pgpipe/stat_sampler.py'
2020-01-10T22:51:36   adding 'pgpipe/subtract_bed.py'
2020-01-10T22:51:36   adding 'pgpipe/test_cython.c'
2020-01-10T22:51:37   adding 'pgpipe/test_cython.cpython-37m-arm-linux-gnueabihf.so'
2020-01-10T22:51:37   adding 'pgpipe/test_cython.pyx'
2020-01-10T22:51:37   adding 'pgpipe/vcf_calc.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_filter.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_filter_vcftools.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_liftover.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_phase.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_reader_func.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_ref_to_seq.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_sampler.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_split.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_split_pysam.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_to_ima.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_to_treemix.py'
2020-01-10T22:51:37   adding 'pgpipe/vcf_utilities.py'
2020-01-10T22:51:37   adding 'pgpipe/vcftools.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/admixture.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/bed_utilities.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/convert.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/eigenstrat_fstats.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/four_gamete.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/ima3_wrapper.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/informative_loci_filter.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/plink_ld.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/stat_sampler.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_calc.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_filter.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_liftover.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_phase.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_split.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_to_ima.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.data/scripts/vcf_utilities.py'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.dist-info/METADATA'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.dist-info/WHEEL'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.dist-info/top_level.txt'
2020-01-10T22:51:37   adding 'py_popgen-0.1.3.dist-info/RECORD'
2020-01-10T22:51:37   removing build/bdist.linux-armv7l/wheel
2020-01-10T22:51:37   Building wheel for py-popgen (setup.py): finished with status 'done'
2020-01-10T22:51:37   Stored in directory: /tmp/tmp3z02cmtp
2020-01-10T22:51:37 Successfully built py-popgen
2020-01-10T22:51:37 Cleaning up...
2020-01-10T22:51:37   Removing source in /tmp/pip-wheel-alavskqa/py-popgen
2020-01-10T22:51:37 Removed build tracker '/tmp/pip-req-tracker-glzqooq0'