2020-01-16T22:19:47 Created temporary directory: /tmp/pip-ephem-wheel-cache-30c0c4cq
2020-01-16T22:19:47 Created temporary directory: /tmp/pip-req-tracker-ipkhz2qg
2020-01-16T22:19:47 Created requirements tracker '/tmp/pip-req-tracker-ipkhz2qg'
2020-01-16T22:19:47 Created temporary directory: /tmp/pip-wheel-tb5w956k
2020-01-16T22:19:47 Collecting py-popgen==0.1.6
2020-01-16T22:19:47   1 location(s) to search for versions of py-popgen:
2020-01-16T22:19:47   * https://pypi.org/simple/py-popgen/
2020-01-16T22:19:47   Getting page https://pypi.org/simple/py-popgen/
2020-01-16T22:19:47   Analyzing links from page https://pypi.org/simple/py-popgen/
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz#sha256=c95c719e8e1536b59b32fd617118d8374e8b4438ec114d1fc48704ccf9ccaf9a (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz#sha256=150557350080571d2db292b647478c80bfe7bfd81a3750db368276e613fae36d (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz#sha256=29493332c6131f297c20575b30e7a15ee2782dd517cb6bd7c3e25bd06f38e37e (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz#sha256=3d18d3360fdc4296a01f3c530757723b4ffe97bed9776e54f643b480e9439bcc (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2020-01-16T22:19:47     Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2020-01-16T22:19:47   Using version 0.1.6 (newest of versions: 0.1.6)
2020-01-16T22:19:47   Created temporary directory: /tmp/pip-unpack-itq6up2w
2020-01-16T22:19:48   Downloading https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (26.9MB)
2020-01-16T22:19:48   Downloading from URL https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2020-01-16T22:19:58   Added py-popgen==0.1.6 from https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 to build tracker '/tmp/pip-req-tracker-ipkhz2qg'
2020-01-16T22:19:58     Running setup.py (path:/tmp/pip-wheel-tb5w956k/py-popgen/setup.py) egg_info for package py-popgen
2020-01-16T22:19:58     Running command python setup.py egg_info
2020-01-16T22:19:59     running egg_info
2020-01-16T22:19:59     creating pip-egg-info/py_popgen.egg-info
2020-01-16T22:19:59     writing pip-egg-info/py_popgen.egg-info/PKG-INFO
2020-01-16T22:19:59     writing dependency_links to pip-egg-info/py_popgen.egg-info/dependency_links.txt
2020-01-16T22:19:59     writing requirements to pip-egg-info/py_popgen.egg-info/requires.txt
2020-01-16T22:19:59     writing top-level names to pip-egg-info/py_popgen.egg-info/top_level.txt
2020-01-16T22:19:59     writing manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-01-16T22:20:00     reading manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-01-16T22:20:00     reading manifest template 'MANIFEST.in'
2020-01-16T22:20:00     writing manifest file 'pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-01-16T22:20:00   Source in /tmp/pip-wheel-tb5w956k/py-popgen has version 0.1.6, which satisfies requirement py-popgen==0.1.6 from https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21
2020-01-16T22:20:00   Removed py-popgen==0.1.6 from https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 from build tracker '/tmp/pip-req-tracker-ipkhz2qg'
2020-01-16T22:20:00 Building wheels for collected packages: py-popgen
2020-01-16T22:20:00   Created temporary directory: /tmp/pip-wheel-5pio7ohh
2020-01-16T22:20:00   Building wheel for py-popgen (setup.py): started
2020-01-16T22:20:00   Destination directory: /tmp/pip-wheel-5pio7ohh
2020-01-16T22:20:00   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-tb5w956k/py-popgen/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5pio7ohh
2020-01-16T22:20:01   running bdist_wheel
2020-01-16T22:20:01   running build
2020-01-16T22:20:01   running build_py
2020-01-16T22:20:02   creating build
2020-01-16T22:20:02   creating build/lib
2020-01-16T22:20:02   creating build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_to_ima.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/four_gamete.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/picard.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_ref_to_seq.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/subtract_bed.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/argparse_sets.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_filter.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcftools.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_sampler.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/get_nonmissing_chunks.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/model_creator.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/filter_single_vcf.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_calc.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/ima_priors.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/parse_functions.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/genome_region.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_reader_func.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/extend_loci.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_liftover.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/informative_loci_filter.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/admixture.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_split.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/bed_invert.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/shapeit.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/model.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/stat_sampler.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/site_stats.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_to_treemix.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_utilities.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/model_sampler.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/ima_to_treemix.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/logging_module.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/min_pop_filter.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/bcftools.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/fasta_utilities.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/eigenstrat_fstats.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_phase.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/bed_utilities.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/plink_ld.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/misc.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/plink.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/ima3_wrapper.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_split_pysam.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/fasta.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/__init__.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/vcf_filter_vcftools.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/beagle.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/convert.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/admixtools.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/graph_plotter.py -> build/lib/pgpipe
2020-01-16T22:20:02   copying pgpipe/bedtools.py -> build/lib/pgpipe
2020-01-16T22:20:02   running egg_info
2020-01-16T22:20:02   writing py_popgen.egg-info/PKG-INFO
2020-01-16T22:20:02   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2020-01-16T22:20:02   writing requirements to py_popgen.egg-info/requires.txt
2020-01-16T22:20:02   writing top-level names to py_popgen.egg-info/top_level.txt
2020-01-16T22:20:02   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-01-16T22:20:02   reading manifest template 'MANIFEST.in'
2020-01-16T22:20:02   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-01-16T22:20:02   copying pgpipe/test_cython.pyx -> build/lib/pgpipe
2020-01-16T22:20:02   running build_scripts
2020-01-16T22:20:02   creating build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/bed_utilities.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/convert.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/admixture.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.7
2020-01-16T22:20:02   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.7
2020-01-16T22:20:02   copying pgpipe/vcf_split_pysam.py -> build/scripts-3.7
2020-01-16T22:20:02   copying pgpipe/bed_invert.py -> build/scripts-3.7
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_calc.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_split.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_phase.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/four_gamete.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/stat_sampler.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/bed_utilities.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/informative_loci_filter.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/convert.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_to_ima.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/admixture.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/plink_ld.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/ima3_wrapper.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/eigenstrat_fstats.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_liftover.py from 644 to 755
2020-01-16T22:20:02   changing mode of build/scripts-3.7/vcf_utilities.py from 644 to 755
2020-01-16T22:20:02   installing to build/bdist.linux-armv7l/wheel
2020-01-16T22:20:02   running install
2020-01-16T22:20:02   running install_lib
2020-01-16T22:20:02   creating build/bdist.linux-armv7l
2020-01-16T22:20:02   creating build/bdist.linux-armv7l/wheel
2020-01-16T22:20:02   creating build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/bed_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/misc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   copying build/lib/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-01-16T22:20:02   running install_egg_info
2020-01-16T22:20:02   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.6-py3.7.egg-info
2020-01-16T22:20:02   running install_scripts
2020-01-16T22:20:02   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data
2020-01-16T22:20:02   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/bed_invert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/bed_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:02   copying build/scripts-3.7/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:03   copying build/scripts-3.7/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_to_ima.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/four_gamete.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_filter.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_calc.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_liftover.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/informative_loci_filter.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/admixture.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_split.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/bed_invert.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/stat_sampler.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_utilities.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/eigenstrat_fstats.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_phase.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/bed_utilities.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/plink_ld.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/ima3_wrapper.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/vcf_split_pysam.py to 755
2020-01-16T22:20:03   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.data/scripts/convert.py to 755
2020-01-16T22:20:03   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.6.dist-info/WHEEL
2020-01-16T22:20:03   creating '/tmp/pip-wheel-5pio7ohh/py_popgen-0.1.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-01-16T22:20:03   adding 'pgpipe/__init__.py'
2020-01-16T22:20:03   adding 'pgpipe/admixtools.py'
2020-01-16T22:20:03   adding 'pgpipe/admixture.py'
2020-01-16T22:20:03   adding 'pgpipe/argparse_sets.py'
2020-01-16T22:20:03   adding 'pgpipe/bcftools.py'
2020-01-16T22:20:03   adding 'pgpipe/beagle.py'
2020-01-16T22:20:03   adding 'pgpipe/bed_invert.py'
2020-01-16T22:20:03   adding 'pgpipe/bed_utilities.py'
2020-01-16T22:20:03   adding 'pgpipe/bedtools.py'
2020-01-16T22:20:03   adding 'pgpipe/convert.py'
2020-01-16T22:20:03   adding 'pgpipe/eigenstrat_fstats.py'
2020-01-16T22:20:03   adding 'pgpipe/extend_loci.py'
2020-01-16T22:20:03   adding 'pgpipe/fasta.py'
2020-01-16T22:20:03   adding 'pgpipe/fasta_utilities.py'
2020-01-16T22:20:03   adding 'pgpipe/filter_single_vcf.py'
2020-01-16T22:20:03   adding 'pgpipe/four_gamete.py'
2020-01-16T22:20:03   adding 'pgpipe/genome_region.py'
2020-01-16T22:20:03   adding 'pgpipe/get_nonmissing_chunks.py'
2020-01-16T22:20:03   adding 'pgpipe/graph_plotter.py'
2020-01-16T22:20:03   adding 'pgpipe/ima3_wrapper.py'
2020-01-16T22:20:03   adding 'pgpipe/ima_priors.py'
2020-01-16T22:20:03   adding 'pgpipe/ima_to_treemix.py'
2020-01-16T22:20:03   adding 'pgpipe/informative_loci_filter.py'
2020-01-16T22:20:03   adding 'pgpipe/logging_module.py'
2020-01-16T22:20:03   adding 'pgpipe/min_pop_filter.py'
2020-01-16T22:20:03   adding 'pgpipe/misc.py'
2020-01-16T22:20:03   adding 'pgpipe/model.py'
2020-01-16T22:20:03   adding 'pgpipe/model_creator.py'
2020-01-16T22:20:03   adding 'pgpipe/model_sampler.py'
2020-01-16T22:20:03   adding 'pgpipe/parse_functions.py'
2020-01-16T22:20:03   adding 'pgpipe/picard.py'
2020-01-16T22:20:03   adding 'pgpipe/plink.py'
2020-01-16T22:20:03   adding 'pgpipe/plink_ld.py'
2020-01-16T22:20:03   adding 'pgpipe/shapeit.py'
2020-01-16T22:20:03   adding 'pgpipe/site_stats.py'
2020-01-16T22:20:03   adding 'pgpipe/stat_sampler.py'
2020-01-16T22:20:03   adding 'pgpipe/subtract_bed.py'
2020-01-16T22:20:03   adding 'pgpipe/test_cython.pyx'
2020-01-16T22:20:03   adding 'pgpipe/vcf_calc.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_filter.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_filter_vcftools.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_liftover.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_phase.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_reader_func.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_ref_to_seq.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_sampler.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_split.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_split_pysam.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_to_ima.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_to_treemix.py'
2020-01-16T22:20:03   adding 'pgpipe/vcf_utilities.py'
2020-01-16T22:20:03   adding 'pgpipe/vcftools.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/admixture.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/bed_invert.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/bed_utilities.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/convert.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/eigenstrat_fstats.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/four_gamete.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/ima3_wrapper.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/informative_loci_filter.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/plink_ld.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/stat_sampler.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_calc.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_filter.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_liftover.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_phase.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_split.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_split_pysam.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_to_ima.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.data/scripts/vcf_utilities.py'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.dist-info/METADATA'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.dist-info/WHEEL'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.dist-info/top_level.txt'
2020-01-16T22:20:03   adding 'py_popgen-0.1.6.dist-info/RECORD'
2020-01-16T22:20:03   removing build/bdist.linux-armv7l/wheel
2020-01-16T22:20:03   Building wheel for py-popgen (setup.py): finished with status 'done'
2020-01-16T22:20:03   Stored in directory: /tmp/tmp3x7xapne
2020-01-16T22:20:03 Successfully built py-popgen
2020-01-16T22:20:03 Cleaning up...
2020-01-16T22:20:03   Removing source in /tmp/pip-wheel-tb5w956k/py-popgen
2020-01-16T22:20:03 Removed build tracker '/tmp/pip-req-tracker-ipkhz2qg'