2020-02-11T06:38:49 Created temporary directory: /tmp/pip-ephem-wheel-cache-w0svz36n 2020-02-11T06:38:49 Created temporary directory: /tmp/pip-req-tracker-642d8ecf 2020-02-11T06:38:49 Created requirements tracker '/tmp/pip-req-tracker-642d8ecf' 2020-02-11T06:38:49 Created temporary directory: /tmp/pip-wheel-7kf8mkz8 2020-02-11T06:38:49 Collecting jcvi==1.0.3 2020-02-11T06:38:49 1 location(s) to search for versions of jcvi: 2020-02-11T06:38:49 * https://pypi.org/simple/jcvi/ 2020-02-11T06:38:49 Getting page https://pypi.org/simple/jcvi/ 2020-02-11T06:38:49 Analyzing links from page https://pypi.org/simple/jcvi/ 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-02-11T06:38:49 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-02-11T06:38:49 Using version 1.0.3 (newest of versions: 1.0.3) 2020-02-11T06:38:49 Created temporary directory: /tmp/pip-unpack-h0l_wd_t 2020-02-11T06:38:50 Downloading https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz (814kB) 2020-02-11T06:38:50 Downloading from URL https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/) 2020-02-11T06:38:52 Added jcvi==1.0.3 from https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df to build tracker '/tmp/pip-req-tracker-642d8ecf' 2020-02-11T06:38:52 Running setup.py (path:/tmp/pip-wheel-7kf8mkz8/jcvi/setup.py) egg_info for package jcvi 2020-02-11T06:38:52 Running command python setup.py egg_info 2020-02-11T06:38:55 running egg_info 2020-02-11T06:38:55 creating pip-egg-info/jcvi.egg-info 2020-02-11T06:38:55 writing dependency_links to pip-egg-info/jcvi.egg-info/dependency_links.txt 2020-02-11T06:38:55 writing requirements to pip-egg-info/jcvi.egg-info/requires.txt 2020-02-11T06:38:55 writing top-level names to pip-egg-info/jcvi.egg-info/top_level.txt 2020-02-11T06:38:55 writing pip-egg-info/jcvi.egg-info/PKG-INFO 2020-02-11T06:38:55 writing manifest file 'pip-egg-info/jcvi.egg-info/SOURCES.txt' 2020-02-11T06:38:55 reading manifest file 'pip-egg-info/jcvi.egg-info/SOURCES.txt' 2020-02-11T06:38:55 reading manifest template 'MANIFEST.in' 2020-02-11T06:38:55 writing manifest file 'pip-egg-info/jcvi.egg-info/SOURCES.txt' 2020-02-11T06:38:55 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing 'v1.0.3' to '1.0.3' 2020-02-11T06:38:55 normalized_version, 2020-02-11T06:38:55 Source in /tmp/pip-wheel-7kf8mkz8/jcvi has version 1.0.3, which satisfies requirement jcvi==1.0.3 from https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df 2020-02-11T06:38:55 Removed jcvi==1.0.3 from https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df from build tracker '/tmp/pip-req-tracker-642d8ecf' 2020-02-11T06:38:55 Building wheels for collected packages: jcvi 2020-02-11T06:38:55 Created temporary directory: /tmp/pip-wheel-4s0l9r46 2020-02-11T06:38:55 Building wheel for jcvi (setup.py): started 2020-02-11T06:38:55 Destination directory: /tmp/pip-wheel-4s0l9r46 2020-02-11T06:38:55 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-7kf8mkz8/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4s0l9r46 2020-02-11T06:38:58 /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:472: UserWarning: Normalizing 'v1.0.3' to '1.0.3' 2020-02-11T06:38:58 normalized_version, 2020-02-11T06:38:58 running bdist_wheel 2020-02-11T06:38:58 running build 2020-02-11T06:38:58 running build_py 2020-02-11T06:38:59 creating build 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi 2020-02-11T06:38:59 copying jcvi/_version.py -> build/lib.linux-armv7l-3.5/jcvi 2020-02-11T06:38:59 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.5/jcvi 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.5/jcvi/algorithms 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.5/jcvi/projects 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.5/jcvi/graphics 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.5/jcvi/annotation 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.5/jcvi/compara 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.5/jcvi/apps 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.5/jcvi/variation 2020-02-11T06:38:59 creating build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:38:59 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:38:59 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:38:59 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:38:59 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:38:59 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 creating build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.5/jcvi/utils 2020-02-11T06:39:00 creating build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 running egg_info 2020-02-11T06:39:00 writing top-level names to jcvi.egg-info/top_level.txt 2020-02-11T06:39:00 writing jcvi.egg-info/PKG-INFO 2020-02-11T06:39:00 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-02-11T06:39:00 writing requirements to jcvi.egg-info/requires.txt 2020-02-11T06:39:00 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-02-11T06:39:00 reading manifest template 'MANIFEST.in' 2020-02-11T06:39:00 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-02-11T06:39:00 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:39:00 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:00 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.5/jcvi/utils/data 2020-02-11T06:39:00 UPDATING build/lib.linux-armv7l-3.5/jcvi/_version.py 2020-02-11T06:39:00 set build/lib.linux-armv7l-3.5/jcvi/_version.py to 'v1.0.3' 2020-02-11T06:39:00 running build_ext 2020-02-11T06:39:00 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-02-11T06:39:07 building 'jcvi.assembly.chic' extension 2020-02-11T06:39:07 creating build/temp.linux-armv7l-3.5 2020-02-11T06:39:07 creating build/temp.linux-armv7l-3.5/jcvi 2020-02-11T06:39:07 creating build/temp.linux-armv7l-3.5/jcvi/assembly 2020-02-11T06:39:07 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -O3 2020-02-11T06:39:08 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, 2020-02-11T06:39:08 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, 2020-02-11T06:39:08 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-02-11T06:39:08 from jcvi/assembly/chic.c:435: 2020-02-11T06:39:08 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-02-11T06:39:08 #warning "Using deprecated NumPy API, disable it by " \ 2020-02-11T06:39:08 ^~~~~~~ 2020-02-11T06:39:16 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so 2020-02-11T06:39:16 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-02-11T06:39:18 building 'jcvi.formats.cblast' extension 2020-02-11T06:39:18 creating build/temp.linux-armv7l-3.5/jcvi/formats 2020-02-11T06:39:18 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -O3 2020-02-11T06:39:30 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so 2020-02-11T06:39:31 installing to build/bdist.linux-armv7l/wheel 2020-02-11T06:39:31 running install 2020-02-11T06:39:31 running install_lib 2020-02-11T06:39:31 creating build/bdist.linux-armv7l 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-02-11T06:39:31 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:31 copying build/lib.linux-armv7l-3.5/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-02-11T06:39:32 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-02-11T06:39:32 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-02-11T06:39:32 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/cblast.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-02-11T06:39:32 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 copying build/lib.linux-armv7l-3.5/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-02-11T06:39:32 running install_egg_info 2020-02-11T06:39:32 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.3-py3.5.egg-info 2020-02-11T06:39:32 running install_scripts 2020-02-11T06:39:33 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.3.dist-info/WHEEL 2020-02-11T06:39:35 Building wheel for jcvi (setup.py): finished with status 'done' 2020-02-11T06:39:35 Stored in directory: /tmp/tmpa_fds86n 2020-02-11T06:39:35 Successfully built jcvi 2020-02-11T06:39:35 Cleaning up... 2020-02-11T06:39:35 Removing source in /tmp/pip-wheel-7kf8mkz8/jcvi 2020-02-11T06:39:36 Removed build tracker '/tmp/pip-req-tracker-642d8ecf'