2020-02-11T12:32:01 Created temporary directory: /tmp/pip-ephem-wheel-cache-_32vkg7p 2020-02-11T12:32:01 Created temporary directory: /tmp/pip-req-tracker-jgxpt1a2 2020-02-11T12:32:01 Created requirements tracker '/tmp/pip-req-tracker-jgxpt1a2' 2020-02-11T12:32:02 Created temporary directory: /tmp/pip-wheel-y0sl34wt 2020-02-11T12:32:02 Collecting dms-variants==0.5.0 2020-02-11T12:32:02 1 location(s) to search for versions of dms-variants: 2020-02-11T12:32:02 * https://pypi.org/simple/dms-variants/ 2020-02-11T12:32:02 Getting page https://pypi.org/simple/dms-variants/ 2020-02-11T12:32:02 Analyzing links from page https://pypi.org/simple/dms-variants/ 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/ae/3f/55cb4c15b42820532cac821318f50f3ad17ade82f880d71812bcae8967c7/dms_variants-0.1.0.tar.gz#sha256=240e9258b4185a36e0b8058661d4f482960b23f76bffa69ecb47046c8316d91f (from https://pypi.org/simple/dms-variants/), version: 0.1.0 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/a1/df/f59669180f011684499c37ecc8cb267773f1b30959912929e2bece714a2b/dms_variants-0.2.0.tar.gz#sha256=23bba8fe9475fe9ffcbac1de26ebfc18b2d801c0202d463f3cb187afcaaf8667 (from https://pypi.org/simple/dms-variants/), version: 0.2.0 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/5a/f8/776a37d070d5aed4b93ff2e010a82dc4b0d7f850968370ddd2d853cc2bde/dms_variants-0.3.0.tar.gz#sha256=a4ca60ab427417385f4ba1c29bfb3c12232f1b75ebfabd58021733f7584d2de5 (from https://pypi.org/simple/dms-variants/), version: 0.3.0 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/08/cb/ecaba6f45ed2b0a10c2c7c973bf7f7e6650e91706e2a9714003f39b70d9c/dms_variants-0.4.0.tar.gz#sha256=15fe61c48be235d99222ffd974ad3f0870c926c81185c4f6b9b3c77b6aae363f (from https://pypi.org/simple/dms-variants/), version: 0.4.0 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/cb/c1/ee28982822869d3858cf904c46cae6f6abf9a49004a1d402c7c49e75c931/dms_variants-0.4.1.tar.gz#sha256=49e1715dd9f8c2f6f4c991ff47ad57b310a0018d717b9968f9fe63927b5d977f (from https://pypi.org/simple/dms-variants/), version: 0.4.1 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/ab/1f/5f97b19ea51460f1e313a0e583397f2885b2c78227d25217e97f40cf9cd6/dms_variants-0.4.2.tar.gz#sha256=0b6c10a4211d2c7457d38e05b49f883b757e25da1834f8a979fbe823b859f0fb (from https://pypi.org/simple/dms-variants/), version: 0.4.2 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/18/5c/5c03b9809e9e3642993b12c623f494d1e9850a37d66ec4265dc5cf34cd4e/dms_variants-0.4.3.tar.gz#sha256=475af7344dd422b1e4d26b8feb99c7f408021b28f1e4a9cec0b8f3be00ae4260 (from https://pypi.org/simple/dms-variants/), version: 0.4.3 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/a4/47/f6ca84c217c56945969a0ac705049e353f15112d499cc19dda78d3df1303/dms_variants-0.4.4.tar.gz#sha256=1340251c9b7771f533f6aa87062d7f497196b7f3d5131ed10403a0e400d6199a (from https://pypi.org/simple/dms-variants/), version: 0.4.4 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/00/0e/0a93d88f0d7bdf44468684379a1a08157e9975c9d22196779654f71476b8/dms_variants-0.4.5.tar.gz#sha256=a4d057b48c966078f12ee1ac1a9fabbcd037854163dbe158581a8c267d2c19b0 (from https://pypi.org/simple/dms-variants/), version: 0.4.5 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/70/c5/2e269ddbe3e1c97cff9f57359c64c611f60e2e5410c34f3d3d386055c965/dms_variants-0.4.6.tar.gz#sha256=8ccfdfe657434642d5a8e44cff81540ed935397f200af3c68fe7e2824067311c (from https://pypi.org/simple/dms-variants/), version: 0.4.6 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/8a/f6/cfbf9b91a015af228a967735f0f344c1e5c3c0cd0d1a352ac527c491480c/dms_variants-0.4.7.tar.gz#sha256=2ace07ad2cf1eb6d7dad4ae436bf5d7ddf85f5aab86dd89ba530ef9dab0a1b7f (from https://pypi.org/simple/dms-variants/), version: 0.4.7 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz#sha256=deafb649aee3962932c5eca981f0e524d4b3712e912ba5d87626f14b0164efd0 (from https://pypi.org/simple/dms-variants/), version: 0.5.0 2020-02-11T12:32:02 Found link https://files.pythonhosted.org/packages/c0/87/803c8c10bffd7266a9aad3aa29aacd7e5afcd78200be1ef84f420eaa9738/dms_variants-0.5.1.tar.gz#sha256=653c3dfcad844fc77c19273f0c4211ce5e46775ba7ce4acd72a1d6ee9829f18c (from https://pypi.org/simple/dms-variants/), version: 0.5.1 2020-02-11T12:32:02 Using version 0.5.0 (newest of versions: 0.5.0) 2020-02-11T12:32:02 Created temporary directory: /tmp/pip-unpack-jhyafaib 2020-02-11T12:32:02 Downloading https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz (79kB) 2020-02-11T12:32:02 Downloading from URL https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz#sha256=deafb649aee3962932c5eca981f0e524d4b3712e912ba5d87626f14b0164efd0 (from https://pypi.org/simple/dms-variants/) 2020-02-11T12:32:02 Added dms-variants==0.5.0 from https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz#sha256=deafb649aee3962932c5eca981f0e524d4b3712e912ba5d87626f14b0164efd0 to build tracker '/tmp/pip-req-tracker-jgxpt1a2' 2020-02-11T12:32:02 Running setup.py (path:/tmp/pip-wheel-y0sl34wt/dms-variants/setup.py) egg_info for package dms-variants 2020-02-11T12:32:02 Running command python setup.py egg_info 2020-02-11T12:32:04 running egg_info 2020-02-11T12:32:04 creating pip-egg-info/dms_variants.egg-info 2020-02-11T12:32:04 writing pip-egg-info/dms_variants.egg-info/PKG-INFO 2020-02-11T12:32:04 writing dependency_links to pip-egg-info/dms_variants.egg-info/dependency_links.txt 2020-02-11T12:32:04 writing requirements to pip-egg-info/dms_variants.egg-info/requires.txt 2020-02-11T12:32:04 writing top-level names to pip-egg-info/dms_variants.egg-info/top_level.txt 2020-02-11T12:32:04 writing manifest file 'pip-egg-info/dms_variants.egg-info/SOURCES.txt' 2020-02-11T12:32:05 reading manifest file 'pip-egg-info/dms_variants.egg-info/SOURCES.txt' 2020-02-11T12:32:05 writing manifest file 'pip-egg-info/dms_variants.egg-info/SOURCES.txt' 2020-02-11T12:32:05 Source in /tmp/pip-wheel-y0sl34wt/dms-variants has version 0.5.0, which satisfies requirement dms-variants==0.5.0 from https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz#sha256=deafb649aee3962932c5eca981f0e524d4b3712e912ba5d87626f14b0164efd0 2020-02-11T12:32:05 Removed dms-variants==0.5.0 from https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz#sha256=deafb649aee3962932c5eca981f0e524d4b3712e912ba5d87626f14b0164efd0 from build tracker '/tmp/pip-req-tracker-jgxpt1a2' 2020-02-11T12:32:05 Building wheels for collected packages: dms-variants 2020-02-11T12:32:05 Created temporary directory: /tmp/pip-wheel-fw8_rw4p 2020-02-11T12:32:05 Building wheel for dms-variants (setup.py): started 2020-02-11T12:32:05 Destination directory: /tmp/pip-wheel-fw8_rw4p 2020-02-11T12:32:05 Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-y0sl34wt/dms-variants/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fw8_rw4p 2020-02-11T12:32:06 running bdist_wheel 2020-02-11T12:32:06 running build 2020-02-11T12:32:06 running build_py 2020-02-11T12:32:06 creating build 2020-02-11T12:32:06 creating build/lib.linux-armv7l-3.7 2020-02-11T12:32:06 creating build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/simulate.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/binarymap.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/codonvarianttable.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/utils.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/globalepistasis.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/ispline.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/constants.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:06 copying dms_variants/barcodes.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 copying dms_variants/plotnine_themes.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 copying dms_variants/fastq.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 copying dms_variants/__init__.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 copying dms_variants/bottlenecks.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 copying dms_variants/illuminabarcodeparser.py -> build/lib.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 running build_ext 2020-02-11T12:32:07 building 'dms_variants._cutils' extension 2020-02-11T12:32:07 creating build/temp.linux-armv7l-3.7 2020-02-11T12:32:07 creating build/temp.linux-armv7l-3.7/dms_variants 2020-02-11T12:32:07 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c dms_variants/_cutils.c -o build/temp.linux-armv7l-3.7/dms_variants/_cutils.o -Wno-error=declaration-after-statement 2020-02-11T12:32:12 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/dms_variants/_cutils.o -o build/lib.linux-armv7l-3.7/dms_variants/_cutils.cpython-37m-arm-linux-gnueabihf.so 2020-02-11T12:32:13 installing to build/bdist.linux-armv7l/wheel 2020-02-11T12:32:13 running install 2020-02-11T12:32:13 running install_lib 2020-02-11T12:32:13 creating build/bdist.linux-armv7l 2020-02-11T12:32:13 creating build/bdist.linux-armv7l/wheel 2020-02-11T12:32:13 creating build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/simulate.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/binarymap.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/codonvarianttable.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/_cutils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/utils.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/globalepistasis.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/ispline.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/constants.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/barcodes.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/plotnine_themes.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/fastq.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/__init__.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/bottlenecks.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 copying build/lib.linux-armv7l-3.7/dms_variants/illuminabarcodeparser.py -> build/bdist.linux-armv7l/wheel/dms_variants 2020-02-11T12:32:13 running install_egg_info 2020-02-11T12:32:13 running egg_info 2020-02-11T12:32:13 writing dms_variants.egg-info/PKG-INFO 2020-02-11T12:32:13 writing dependency_links to dms_variants.egg-info/dependency_links.txt 2020-02-11T12:32:13 writing requirements to dms_variants.egg-info/requires.txt 2020-02-11T12:32:13 writing top-level names to dms_variants.egg-info/top_level.txt 2020-02-11T12:32:13 reading manifest file 'dms_variants.egg-info/SOURCES.txt' 2020-02-11T12:32:13 writing manifest file 'dms_variants.egg-info/SOURCES.txt' 2020-02-11T12:32:13 Copying dms_variants.egg-info to build/bdist.linux-armv7l/wheel/dms_variants-0.5.0-py3.7.egg-info 2020-02-11T12:32:13 running install_scripts 2020-02-11T12:32:13 creating build/bdist.linux-armv7l/wheel/dms_variants-0.5.0.dist-info/WHEEL 2020-02-11T12:32:13 creating '/tmp/pip-wheel-fw8_rw4p/dms_variants-0.5.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-02-11T12:32:13 adding 'dms_variants/__init__.py' 2020-02-11T12:32:13 adding 'dms_variants/_cutils.cpython-37m-arm-linux-gnueabihf.so' 2020-02-11T12:32:13 adding 'dms_variants/barcodes.py' 2020-02-11T12:32:13 adding 'dms_variants/binarymap.py' 2020-02-11T12:32:13 adding 'dms_variants/bottlenecks.py' 2020-02-11T12:32:13 adding 'dms_variants/codonvarianttable.py' 2020-02-11T12:32:13 adding 'dms_variants/constants.py' 2020-02-11T12:32:13 adding 'dms_variants/fastq.py' 2020-02-11T12:32:13 adding 'dms_variants/globalepistasis.py' 2020-02-11T12:32:13 adding 'dms_variants/illuminabarcodeparser.py' 2020-02-11T12:32:13 adding 'dms_variants/ispline.py' 2020-02-11T12:32:13 adding 'dms_variants/plotnine_themes.py' 2020-02-11T12:32:13 adding 'dms_variants/simulate.py' 2020-02-11T12:32:13 adding 'dms_variants/utils.py' 2020-02-11T12:32:13 adding 'dms_variants-0.5.0.dist-info/METADATA' 2020-02-11T12:32:13 adding 'dms_variants-0.5.0.dist-info/WHEEL' 2020-02-11T12:32:13 adding 'dms_variants-0.5.0.dist-info/top_level.txt' 2020-02-11T12:32:13 adding 'dms_variants-0.5.0.dist-info/RECORD' 2020-02-11T12:32:13 removing build/bdist.linux-armv7l/wheel 2020-02-11T12:32:13 Building wheel for dms-variants (setup.py): finished with status 'done' 2020-02-11T12:32:13 Stored in directory: /tmp/tmp0lnj9xn3 2020-02-11T12:32:13 Successfully built dms-variants 2020-02-11T12:32:13 Cleaning up... 2020-02-11T12:32:13 Removing source in /tmp/pip-wheel-y0sl34wt/dms-variants 2020-02-11T12:32:13 Removed build tracker '/tmp/pip-req-tracker-jgxpt1a2'