2020-02-13T02:55:58 Created temporary directory: /tmp/pip-ephem-wheel-cache-swljiavn
2020-02-13T02:55:58 Created temporary directory: /tmp/pip-req-tracker-mt5gyl9v
2020-02-13T02:55:58 Created requirements tracker '/tmp/pip-req-tracker-mt5gyl9v'
2020-02-13T02:55:58 Created temporary directory: /tmp/pip-wheel-g22ca689
2020-02-13T02:55:58 Collecting teca==3.0.0
2020-02-13T02:55:58   1 location(s) to search for versions of teca:
2020-02-13T02:55:58   * https://pypi.org/simple/teca/
2020-02-13T02:55:58   Getting page https://pypi.org/simple/teca/
2020-02-13T02:55:59   Analyzing links from page https://pypi.org/simple/teca/
2020-02-13T02:55:59     Found link https://files.pythonhosted.org/packages/0d/dd/3d41710a0b33186020caa67249de6bfecea84a85d2261b1b8dd835369f20/teca-2.2.1.tar.gz#sha256=1291e6900de51641df5db13ff854003c7c7ff2bb4e575c66574acdb7a95ab785 (from https://pypi.org/simple/teca/), version: 2.2.1
2020-02-13T02:55:59     Found link https://files.pythonhosted.org/packages/10/27/510206a68b8456016add7c84da0ea738229ccfd9a6eb4ee0324dff0080af/teca-2.2.2.tar.gz#sha256=2d328a5251b719580a0363b9743198ee5d2e6ce29230f8448df36d4ad893c94e (from https://pypi.org/simple/teca/), version: 2.2.2
2020-02-13T02:55:59     Found link https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz#sha256=dadebfad51b68478bcca62e79bb06901c7f121ccacb8e0018cacf5255a9a025b (from https://pypi.org/simple/teca/), version: 3.0.0
2020-02-13T02:55:59   Using version 3.0.0 (newest of versions: 3.0.0)
2020-02-13T02:55:59   Created temporary directory: /tmp/pip-unpack-orip58bd
2020-02-13T02:55:59   Downloading https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz (447kB)
2020-02-13T02:55:59   Downloading from URL https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz#sha256=dadebfad51b68478bcca62e79bb06901c7f121ccacb8e0018cacf5255a9a025b (from https://pypi.org/simple/teca/)
2020-02-13T02:56:01   Added teca==3.0.0 from https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz#sha256=dadebfad51b68478bcca62e79bb06901c7f121ccacb8e0018cacf5255a9a025b to build tracker '/tmp/pip-req-tracker-mt5gyl9v'
2020-02-13T02:56:01     Running setup.py (path:/tmp/pip-wheel-g22ca689/teca/setup.py) egg_info for package teca
2020-02-13T02:56:01     Running command python setup.py egg_info
2020-02-13T02:56:04     running egg_info
2020-02-13T02:56:04     creating pip-egg-info/teca.egg-info
2020-02-13T02:56:04     writing pip-egg-info/teca.egg-info/PKG-INFO
2020-02-13T02:56:04     writing dependency_links to pip-egg-info/teca.egg-info/dependency_links.txt
2020-02-13T02:56:04     writing requirements to pip-egg-info/teca.egg-info/requires.txt
2020-02-13T02:56:04     writing top-level names to pip-egg-info/teca.egg-info/top_level.txt
2020-02-13T02:56:04     writing manifest file 'pip-egg-info/teca.egg-info/SOURCES.txt'
2020-02-13T02:56:04     reading manifest file 'pip-egg-info/teca.egg-info/SOURCES.txt'
2020-02-13T02:56:04     reading manifest template 'MANIFEST.in'
2020-02-13T02:56:05     warning: no previously-included files matching '*.pdf' found anywhere in distribution
2020-02-13T02:56:05     warning: no previously-included files matching '*.sw?' found anywhere in distribution
2020-02-13T02:56:05     writing manifest file 'pip-egg-info/teca.egg-info/SOURCES.txt'
2020-02-13T02:56:05   Source in /tmp/pip-wheel-g22ca689/teca has version 3.0.0, which satisfies requirement teca==3.0.0 from https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz#sha256=dadebfad51b68478bcca62e79bb06901c7f121ccacb8e0018cacf5255a9a025b
2020-02-13T02:56:05   Removed teca==3.0.0 from https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz#sha256=dadebfad51b68478bcca62e79bb06901c7f121ccacb8e0018cacf5255a9a025b from build tracker '/tmp/pip-req-tracker-mt5gyl9v'
2020-02-13T02:56:05 Building wheels for collected packages: teca
2020-02-13T02:56:05   Created temporary directory: /tmp/pip-wheel-zrr279d4
2020-02-13T02:56:05   Building wheel for teca (setup.py): started
2020-02-13T02:56:05   Destination directory: /tmp/pip-wheel-zrr279d4
2020-02-13T02:56:05   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-g22ca689/teca/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zrr279d4
2020-02-13T02:56:08   running bdist_wheel
2020-02-13T02:56:08   running build
2020-02-13T02:56:08   running build_ext
2020-02-13T02:56:09   -- The C compiler identification is GNU 8.3.0
2020-02-13T02:56:41   -- The CXX compiler identification is GNU 8.3.0
2020-02-13T02:57:03   -- The Fortran compiler identification is GNU 8.3.0
2020-02-13T02:57:03   -- Check for working C compiler: /usr/bin/cc
2020-02-13T02:57:05   -- Check for working C compiler: /usr/bin/cc -- works
2020-02-13T02:57:05   -- Detecting C compiler ABI info
2020-02-13T02:57:06   -- Detecting C compiler ABI info - done
2020-02-13T02:57:06   -- Detecting C compile features
2020-02-13T02:57:08   -- Detecting C compile features - done
2020-02-13T02:57:08   -- Check for working CXX compiler: /usr/bin/c++
2020-02-13T02:57:08   -- Check for working CXX compiler: /usr/bin/c++ -- works
2020-02-13T02:57:08   -- Detecting CXX compiler ABI info
2020-02-13T02:57:09   -- Detecting CXX compiler ABI info - done
2020-02-13T02:57:09   -- Detecting CXX compile features
2020-02-13T02:57:15   -- Detecting CXX compile features - done
2020-02-13T02:57:15   -- Check for working Fortran compiler: /usr/bin/gfortran
2020-02-13T02:57:15   -- Check for working Fortran compiler: /usr/bin/gfortran  -- works
2020-02-13T02:57:15   -- Detecting Fortran compiler ABI info
2020-02-13T02:57:16   -- Detecting Fortran compiler ABI info - done
2020-02-13T02:57:16   -- Checking whether /usr/bin/gfortran supports Fortran 90
2020-02-13T02:57:17   -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
2020-02-13T02:57:17   -- Configuring a Release build
2020-02-13T02:57:17   -- Check for c++ regex support
2020-02-13T02:57:37   -- Check for c++ regex support -- enabled
2020-02-13T02:57:47   -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1")
2020-02-13T02:57:54   -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1")
2020-02-13T02:58:04   -- Found MPI_Fortran: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_usempif08.so (found version "3.1")
2020-02-13T02:58:04   -- Found MPI: TRUE (found version "3.1")
2020-02-13T02:58:04   -- MPI features -- enabled
2020-02-13T02:58:04   -- Could NOT find NetCDF (missing: NETCDF_LIBRARIES NETCDF_INCLUDE_DIRS)
2020-02-13T02:58:04   CMake Error at CMakeLists.txt:118 (message):
2020-02-13T02:58:04     NetCDF features -- required but not found.  set NETCDF_DIR to enable.


2020-02-13T02:58:04   -- Configuring incomplete, errors occurred!
2020-02-13T02:58:04   See also "/tmp/pip-wheel-g22ca689/teca/build/temp.linux-armv7l-3.7/CMakeFiles/CMakeOutput.log".

2020-02-13T02:58:04   ================================================================
2020-02-13T02:58:04     An error ocured building TECA. This is usually a symptom
2020-02-13T02:58:04     of a missing dependency. The error messages above will indicate
2020-02-13T02:58:04     which package is missing. Install the development package for
2020-02-13T02:58:04     the missing dependency using your system's package manager
2020-02-13T02:58:04   ================================================================

2020-02-13T02:58:04   Traceback (most recent call last):
2020-02-13T02:58:04     File "<string>", line 1, in <module>
2020-02-13T02:58:04     File "/tmp/pip-wheel-g22ca689/teca/setup.py", line 117, in <module>
2020-02-13T02:58:04       install_requires=["mpi4py", "numpy", "matplotlib",],
2020-02-13T02:58:04     File "/usr/local/lib/python3.7/dist-packages/setuptools/__init__.py", line 145, in setup
2020-02-13T02:58:04       return distutils.core.setup(**attrs)
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
2020-02-13T02:58:04       dist.run_commands()
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
2020-02-13T02:58:04       self.run_command(cmd)
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2020-02-13T02:58:04       cmd_obj.run()
2020-02-13T02:58:04     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 188, in run
2020-02-13T02:58:04       self.run_command('build')
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2020-02-13T02:58:04       self.distribution.run_command(command)
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2020-02-13T02:58:04       cmd_obj.run()
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/command/build.py", line 135, in run
2020-02-13T02:58:04       self.run_command(cmd_name)
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/cmd.py", line 313, in run_command
2020-02-13T02:58:04       self.distribution.run_command(command)
2020-02-13T02:58:04     File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
2020-02-13T02:58:04       cmd_obj.run()
2020-02-13T02:58:04     File "/tmp/pip-wheel-g22ca689/teca/setup.py", line 34, in run
2020-02-13T02:58:04       self.build_extension(ext)
2020-02-13T02:58:04     File "/tmp/pip-wheel-g22ca689/teca/setup.py", line 75, in build_extension
2020-02-13T02:58:04       subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp)
2020-02-13T02:58:04     File "/usr/lib/python3.7/subprocess.py", line 347, in check_call
2020-02-13T02:58:04       raise CalledProcessError(retcode, cmd)
2020-02-13T02:58:04   subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-g22ca689/teca', '-DCMAKE_INSTALL_PREFIX=/tmp/pip-wheel-g22ca689/teca/build/lib.linux-armv7l-3.7/teca', '-DLIB_PREFIX=.', '-DREQUIRE_PYTHON=TRUE', '-DREQUIRE_MPI=TRUE', '-DREQUIRE_UDUNITS=TRUE', '-DREQUIRE_NETCDF=TRUE', '-DREQUIRE_BOOST=TRUE', '-DTECA_PYTHON_VERSION=3', '-DTECA_VERSION=3.0.0(PyPi)', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1.
2020-02-13T02:58:04   Building wheel for teca (setup.py): finished with status 'error'
2020-02-13T02:58:04   ERROR: Failed building wheel for teca
2020-02-13T02:58:04   Running setup.py clean for teca
2020-02-13T02:58:04   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-g22ca689/teca/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2020-02-13T02:58:08   running clean
2020-02-13T02:58:08   removing 'build/temp.linux-armv7l-3.7' (and everything under it)
2020-02-13T02:58:08   'build/lib.linux-armv7l-3.7' does not exist -- can't clean it
2020-02-13T02:58:08   'build/bdist.linux-armv7l' does not exist -- can't clean it
2020-02-13T02:58:08   'build/scripts-3.7' does not exist -- can't clean it
2020-02-13T02:58:08   removing 'build'
2020-02-13T02:58:08 Failed to build teca
2020-02-13T02:58:08 Cleaning up...
2020-02-13T02:58:08   Removing source in /tmp/pip-wheel-g22ca689/teca
2020-02-13T02:58:09 Removed build tracker '/tmp/pip-req-tracker-mt5gyl9v'
2020-02-13T02:58:09 ERROR: Failed to build one or more wheels
2020-02-13T02:58:09 Exception information:
2020-02-13T02:58:09 Traceback (most recent call last):
2020-02-13T02:58:09   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/cli/base_command.py", line 178, in main
2020-02-13T02:58:09     status = self.run(options, args)
2020-02-13T02:58:09   File "/usr/local/lib/python3.7/dist-packages/pip/_internal/commands/wheel.py", line 178, in run
2020-02-13T02:58:09     "Failed to build one or more wheels"
2020-02-13T02:58:09 pip._internal.exceptions.CommandError: Failed to build one or more wheels