2020-02-13T08:58:25,300 Created temporary directory: /tmp/pip-ephem-wheel-cache-hrnhvzl5 2020-02-13T08:58:25,303 Created temporary directory: /tmp/pip-req-tracker-kjb6sm9h 2020-02-13T08:58:25,304 Initialized build tracking at /tmp/pip-req-tracker-kjb6sm9h 2020-02-13T08:58:25,304 Created build tracker: /tmp/pip-req-tracker-kjb6sm9h 2020-02-13T08:58:25,305 Entered build tracker: /tmp/pip-req-tracker-kjb6sm9h 2020-02-13T08:58:25,306 Created temporary directory: /tmp/pip-wheel-gesq005p 2020-02-13T08:58:25,310 1 location(s) to search for versions of starfish: 2020-02-13T08:58:25,310 * https://pypi.org/simple/starfish/ 2020-02-13T08:58:25,311 Fetching project page and analyzing links: https://pypi.org/simple/starfish/ 2020-02-13T08:58:25,312 Getting page https://pypi.org/simple/starfish/ 2020-02-13T08:58:25,314 Found index url https://pypi.org/simple 2020-02-13T08:58:25,316 Getting credentials from keyring for https://pypi.org/simple 2020-02-13T08:58:25,317 Getting credentials from keyring for pypi.org 2020-02-13T08:58:25,617 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/ca/cb/a87eaed3aadd4749c556b05f37a30a0b262793bf382d543fe18c84728daa/starfish-0.0.0a0-py3-none-any.whl#sha256=4b01ef557ca9f870cf8a70eedc8735d845bf6db1dda1d8e5ec179a8b49f8b08f (from https://pypi.org/simple/starfish/) 2020-02-13T08:58:25,618 Found link https://files.pythonhosted.org/packages/31/70/6a03a0c66bd29cd3dc7c45f9461454789c06b71d8724a49612317fc1b786/starfish-0.0.0a0.tar.gz#sha256=ab0c6a88251ddabe7b71ae53c4da343518a9e4cd72e953f8a96536b35384779c (from https://pypi.org/simple/starfish/), version: 0.0.0a0 2020-02-13T08:58:25,619 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/19/bd/49494f9d81b209b2e6c0596ea3012823dc2a617149ba1e26ff1a47649a81/starfish-0.0.0a1-py3-none-any.whl#sha256=bd3e716eb37bfc003b63c953dc8c56de9a5af57a3100483645abfdb2fd6094c2 (from https://pypi.org/simple/starfish/) 2020-02-13T08:58:25,619 Found 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https://files.pythonhosted.org/packages/56/9a/2de4f8a28a639433a1131f20246d1f04a6111356de7341388824ad8b61dc/starfish-0.1.9.tar.gz#sha256=02002b908572fcd2c7471475936a6c375f143d15df871399ce86ced6d7aef865 (from https://pypi.org/simple/starfish/), version: 0.1.9 2020-02-13T08:58:25,641 Found link https://files.pythonhosted.org/packages/be/9b/4215abcd20509c27b2885c6736e4640581d00b36e6e3ac178a53138c8f2e/starfish-0.1.10.tar.gz#sha256=0340e37b732e184081b150f21bbbd4eed3643ab49f74633b9c4d827bda663235 (from https://pypi.org/simple/starfish/), version: 0.1.10 2020-02-13T08:58:25,641 Found link https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz#sha256=73202fbc560519dc3b61f1f5e4341c598f6bf50b4509bb09dc22a729591a1042 (from https://pypi.org/simple/starfish/), version: 0.2.0 2020-02-13T08:58:25,660 Given no hashes to check 1 links for project 'starfish': discarding no candidates 2020-02-13T08:58:25,662 Using version 0.2.0 (newest of versions: 0.2.0) 2020-02-13T08:58:25,667 Collecting starfish==0.2.0 2020-02-13T08:58:25,669 Created temporary directory: /tmp/pip-unpack-78952hcm 2020-02-13T08:58:25,672 Getting credentials from keyring for files.pythonhosted.org 2020-02-13T08:58:25,888 Downloading starfish-0.2.0.tar.gz (238 kB) 2020-02-13T08:58:27,424 Added starfish==0.2.0 from https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz#sha256=73202fbc560519dc3b61f1f5e4341c598f6bf50b4509bb09dc22a729591a1042 to build tracker '/tmp/pip-req-tracker-kjb6sm9h' 2020-02-13T08:58:27,426 Running setup.py (path:/tmp/pip-wheel-gesq005p/starfish/setup.py) egg_info for package starfish 2020-02-13T08:58:27,427 Running command python setup.py egg_info 2020-02-13T08:58:29,458 running egg_info 2020-02-13T08:58:29,462 creating /tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info 2020-02-13T08:58:29,464 writing /tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/PKG-INFO 2020-02-13T08:58:29,470 writing dependency_links to /tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/dependency_links.txt 2020-02-13T08:58:29,473 writing entry points to /tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/entry_points.txt 2020-02-13T08:58:29,476 writing requirements to /tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/requires.txt 2020-02-13T08:58:29,478 writing top-level names to /tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/top_level.txt 2020-02-13T08:58:29,482 writing manifest file '/tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/SOURCES.txt' 2020-02-13T08:58:29,564 reading manifest file '/tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/SOURCES.txt' 2020-02-13T08:58:29,567 reading manifest template 'MANIFEST.in' 2020-02-13T08:58:29,636 writing manifest file '/tmp/pip-wheel-gesq005p/starfish/pip-egg-info/starfish.egg-info/SOURCES.txt' 2020-02-13T08:58:29,751 Source in /tmp/pip-wheel-gesq005p/starfish has version 0.2.0, which satisfies requirement starfish==0.2.0 from https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz#sha256=73202fbc560519dc3b61f1f5e4341c598f6bf50b4509bb09dc22a729591a1042 2020-02-13T08:58:29,752 Removed starfish==0.2.0 from https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz#sha256=73202fbc560519dc3b61f1f5e4341c598f6bf50b4509bb09dc22a729591a1042 from build tracker '/tmp/pip-req-tracker-kjb6sm9h' 2020-02-13T08:58:29,755 Building wheels for collected packages: starfish 2020-02-13T08:58:29,763 Created temporary directory: /tmp/pip-wheel-m08hea73 2020-02-13T08:58:29,763 Building wheel for starfish (setup.py): started 2020-02-13T08:58:29,764 Destination directory: /tmp/pip-wheel-m08hea73 2020-02-13T08:58:29,764 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gesq005p/starfish/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gesq005p/starfish/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-m08hea73 2020-02-13T08:58:31,704 running bdist_wheel 2020-02-13T08:58:31,712 running build 2020-02-13T08:58:31,712 running build_py 2020-02-13T08:58:31,724 creating build 2020-02-13T08:58:31,724 creating build/lib 2020-02-13T08:58:31,776 creating build/lib/starfish 2020-02-13T08:58:31,779 copying starfish/types.py -> build/lib/starfish 2020-02-13T08:58:31,784 copying starfish/config.py -> build/lib/starfish 2020-02-13T08:58:31,788 copying starfish/data.py -> build/lib/starfish 2020-02-13T08:58:31,793 copying starfish/spots.py -> build/lib/starfish 2020-02-13T08:58:31,797 copying starfish/__main__.py -> build/lib/starfish 2020-02-13T08:58:31,801 copying starfish/image.py -> build/lib/starfish 2020-02-13T08:58:31,805 copying starfish/morphology.py -> build/lib/starfish 2020-02-13T08:58:31,808 copying starfish/__init__.py -> build/lib/starfish 2020-02-13T08:58:31,812 creating build/lib/starfish/test 2020-02-13T08:58:31,814 copying starfish/test/__init__.py -> build/lib/starfish/test 2020-02-13T08:58:31,818 creating build/lib/starfish/util 2020-02-13T08:58:31,819 copying starfish/util/plot.py -> build/lib/starfish/util 2020-02-13T08:58:31,824 copying starfish/util/__init__.py -> build/lib/starfish/util 2020-02-13T08:58:31,830 creating build/lib/starfish/experiment 2020-02-13T08:58:31,832 copying starfish/experiment/builder.py -> build/lib/starfish/experiment 2020-02-13T08:58:31,837 copying starfish/experiment/__init__.py -> build/lib/starfish/experiment 2020-02-13T08:58:31,843 creating build/lib/starfish/core 2020-02-13T08:58:31,845 copying starfish/core/errors.py -> build/lib/starfish/core 2020-02-13T08:58:31,848 copying starfish/core/_display.py -> build/lib/starfish/core 2020-02-13T08:58:31,852 copying starfish/core/compat.py -> build/lib/starfish/core 2020-02-13T08:58:31,856 copying starfish/core/_version.py -> build/lib/starfish/core 2020-02-13T08:58:31,858 copying starfish/core/__init__.py -> build/lib/starfish/core 2020-02-13T08:58:31,861 copying starfish/core/starfish.py -> build/lib/starfish/core 2020-02-13T08:58:31,865 creating build/lib/starfish/test/full_pipelines 2020-02-13T08:58:31,867 copying starfish/test/full_pipelines/__init__.py -> build/lib/starfish/test/full_pipelines 2020-02-13T08:58:31,871 creating build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,872 copying starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,876 copying starfish/test/full_pipelines/api/test_dartfish.py -> build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,880 copying starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,883 copying starfish/test/full_pipelines/api/test_merfish.py -> build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,887 copying starfish/test/full_pipelines/api/test_iss_api.py -> build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,891 copying starfish/test/full_pipelines/api/__init__.py -> build/lib/starfish/test/full_pipelines/api 2020-02-13T08:58:31,894 creating build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,896 copying starfish/core/intensity_table/decoded_intensity_table.py -> build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,900 copying starfish/core/intensity_table/concatenate.py -> build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,903 copying starfish/core/intensity_table/intensity_table.py -> build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,909 copying starfish/core/intensity_table/intensity_table_coordinates.py -> build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,915 copying starfish/core/intensity_table/overlap.py -> build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,920 copying starfish/core/intensity_table/__init__.py -> build/lib/starfish/core/intensity_table 2020-02-13T08:58:31,926 creating build/lib/starfish/core/config 2020-02-13T08:58:31,928 copying starfish/core/config/__init__.py -> build/lib/starfish/core/config 2020-02-13T08:58:31,936 creating build/lib/starfish/core/image 2020-02-13T08:58:31,938 copying starfish/core/image/__init__.py -> build/lib/starfish/core/image 2020-02-13T08:58:31,945 creating build/lib/starfish/core/segmentation_mask 2020-02-13T08:58:31,947 copying starfish/core/segmentation_mask/segmentation_mask.py -> build/lib/starfish/core/segmentation_mask 2020-02-13T08:58:31,950 copying starfish/core/segmentation_mask/__init__.py -> build/lib/starfish/core/segmentation_mask 2020-02-13T08:58:31,954 creating build/lib/starfish/core/morphology 2020-02-13T08:58:31,956 copying starfish/core/morphology/util.py -> build/lib/starfish/core/morphology 2020-02-13T08:58:31,960 copying starfish/core/morphology/__init__.py -> build/lib/starfish/core/morphology 2020-02-13T08:58:31,963 creating build/lib/starfish/core/test 2020-02-13T08:58:31,965 copying starfish/core/test/test_synthetic_spot_creation.py -> build/lib/starfish/core/test 2020-02-13T08:58:31,969 copying starfish/core/test/test_multiprocessing_workflow.py -> build/lib/starfish/core/test 2020-02-13T08:58:31,973 copying starfish/core/test/factories.py -> build/lib/starfish/core/test 2020-02-13T08:58:31,977 copying starfish/core/test/test_display.py -> build/lib/starfish/core/test 2020-02-13T08:58:31,980 copying starfish/core/test/__init__.py -> build/lib/starfish/core/test 2020-02-13T08:58:31,984 creating build/lib/starfish/core/imagestack 2020-02-13T08:58:31,985 copying starfish/core/imagestack/indexing_utils.py -> build/lib/starfish/core/imagestack 2020-02-13T08:58:31,989 copying starfish/core/imagestack/imagestack.py -> build/lib/starfish/core/imagestack 2020-02-13T08:58:31,995 copying starfish/core/imagestack/physical_coordinates.py -> build/lib/starfish/core/imagestack 2020-02-13T08:58:31,998 copying starfish/core/imagestack/dataorder.py -> build/lib/starfish/core/imagestack 2020-02-13T08:58:32,000 copying starfish/core/imagestack/__init__.py -> build/lib/starfish/core/imagestack 2020-02-13T08:58:32,004 creating build/lib/starfish/core/types 2020-02-13T08:58:32,006 copying starfish/core/types/_spot_attributes.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,009 copying starfish/core/types/_validated_table.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,013 copying starfish/core/types/_constants.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,016 copying starfish/core/types/_decoded_spots.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,019 copying starfish/core/types/_functionsource.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,022 copying starfish/core/types/__init__.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,026 copying starfish/core/types/_spot_finding_results.py -> build/lib/starfish/core/types 2020-02-13T08:58:32,034 creating build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,036 copying starfish/core/spacetx_format/util.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,043 copying starfish/core/spacetx_format/test_field_of_view.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,048 copying starfish/core/spacetx_format/test_fuzz.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,052 copying starfish/core/spacetx_format/cli.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,055 copying starfish/core/spacetx_format/test_fov_manifest.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,058 copying starfish/core/spacetx_format/test_codebook.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,061 copying starfish/core/spacetx_format/validate_sptx.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,064 copying starfish/core/spacetx_format/test_experiment.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,067 copying starfish/core/spacetx_format/__init__.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,071 copying starfish/core/spacetx_format/test_coordinates.py -> build/lib/starfish/core/spacetx_format 2020-02-13T08:58:32,079 creating build/lib/starfish/core/util 2020-02-13T08:58:32,081 copying starfish/core/util/levels.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,087 copying starfish/core/util/try_import.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,091 copying starfish/core/util/config.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,094 copying starfish/core/util/enum.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,097 copying starfish/core/util/clock.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,101 copying starfish/core/util/exec.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,104 copying starfish/core/util/argparse.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,107 copying starfish/core/util/logging.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,111 copying starfish/core/util/__init__.py -> build/lib/starfish/core/util 2020-02-13T08:58:32,117 creating build/lib/starfish/core/experiment 2020-02-13T08:58:32,119 copying starfish/core/experiment/experiment.py -> build/lib/starfish/core/experiment 2020-02-13T08:58:32,126 copying starfish/core/experiment/version.py -> build/lib/starfish/core/experiment 2020-02-13T08:58:32,130 copying starfish/core/experiment/__init__.py -> build/lib/starfish/core/experiment 2020-02-13T08:58:32,133 creating build/lib/starfish/core/codebook 2020-02-13T08:58:32,135 copying starfish/core/codebook/_format.py -> build/lib/starfish/core/codebook 2020-02-13T08:58:32,139 copying starfish/core/codebook/codebook.py -> build/lib/starfish/core/codebook 2020-02-13T08:58:32,143 copying starfish/core/codebook/__init__.py -> build/lib/starfish/core/codebook 2020-02-13T08:58:32,147 creating build/lib/starfish/core/expression_matrix 2020-02-13T08:58:32,149 copying starfish/core/expression_matrix/concatenate.py -> build/lib/starfish/core/expression_matrix 2020-02-13T08:58:32,152 copying starfish/core/expression_matrix/__init__.py -> build/lib/starfish/core/expression_matrix 2020-02-13T08:58:32,155 copying starfish/core/expression_matrix/expression_matrix.py -> build/lib/starfish/core/expression_matrix 2020-02-13T08:58:32,159 creating build/lib/starfish/core/pipeline 2020-02-13T08:58:32,160 copying starfish/core/pipeline/algorithmbase.py -> build/lib/starfish/core/pipeline 2020-02-13T08:58:32,164 copying starfish/core/pipeline/__init__.py -> build/lib/starfish/core/pipeline 2020-02-13T08:58:32,167 creating build/lib/starfish/core/spots 2020-02-13T08:58:32,169 copying starfish/core/spots/__init__.py -> build/lib/starfish/core/spots 2020-02-13T08:58:32,177 creating build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,179 copying starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,185 copying starfish/core/intensity_table/test/test_concatenate.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,190 copying starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,194 copying starfish/core/intensity_table/test/test_to_mermaid.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,197 copying starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,200 copying starfish/core/intensity_table/test/test_overlap.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,204 copying starfish/core/intensity_table/test/factories.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,207 copying starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,211 copying starfish/core/intensity_table/test/test_from_imagestack.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,216 copying starfish/core/intensity_table/test/test_from_spot_data.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,220 copying starfish/core/intensity_table/test/__init__.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,224 copying starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/lib/starfish/core/intensity_table/test 2020-02-13T08:58:32,231 creating build/lib/starfish/core/config/test 2020-02-13T08:58:32,233 copying starfish/core/config/test/test_config.py -> build/lib/starfish/core/config/test 2020-02-13T08:58:32,237 copying starfish/core/config/test/__init__.py -> build/lib/starfish/core/config/test 2020-02-13T08:58:32,241 creating build/lib/starfish/core/image/Segment 2020-02-13T08:58:32,242 copying starfish/core/image/Segment/watershed.py -> build/lib/starfish/core/image/Segment 2020-02-13T08:58:32,246 copying starfish/core/image/Segment/_base.py -> build/lib/starfish/core/image/Segment 2020-02-13T08:58:32,249 copying starfish/core/image/Segment/__init__.py -> build/lib/starfish/core/image/Segment 2020-02-13T08:58:32,255 creating build/lib/starfish/core/image/_registration 2020-02-13T08:58:32,258 copying starfish/core/image/_registration/_format.py -> build/lib/starfish/core/image/_registration 2020-02-13T08:58:32,263 copying starfish/core/image/_registration/transforms_list.py -> build/lib/starfish/core/image/_registration 2020-02-13T08:58:32,268 copying starfish/core/image/_registration/__init__.py -> build/lib/starfish/core/image/_registration 2020-02-13T08:58:32,278 creating build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,280 copying starfish/core/image/Filter/call_bases.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,287 copying starfish/core/image/Filter/util.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,291 copying starfish/core/image/Filter/element_wise_mult.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,295 copying starfish/core/image/Filter/mean_high_pass.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,299 copying starfish/core/image/Filter/match_histograms.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,302 copying starfish/core/image/Filter/white_tophat.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,306 copying starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,310 copying starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,313 copying starfish/core/image/Filter/clip_value_to_zero.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,317 copying starfish/core/image/Filter/gaussian_high_pass.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,321 copying starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,325 copying starfish/core/image/Filter/reduce.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,329 copying starfish/core/image/Filter/linear_unmixing.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,333 copying starfish/core/image/Filter/map.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,339 copying starfish/core/image/Filter/_base.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,343 copying starfish/core/image/Filter/bandpass.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,349 copying starfish/core/image/Filter/gaussian_low_pass.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,354 copying starfish/core/image/Filter/laplace.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,358 copying starfish/core/image/Filter/__init__.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,361 copying starfish/core/image/Filter/clip_percentile_to_zero.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,365 copying starfish/core/image/Filter/clip.py -> build/lib/starfish/core/image/Filter 2020-02-13T08:58:32,369 creating build/lib/starfish/core/image/_registration/test 2020-02-13T08:58:32,371 copying starfish/core/image/_registration/test/test_transforms_list.py -> build/lib/starfish/core/image/_registration/test 2020-02-13T08:58:32,375 copying starfish/core/image/_registration/test/__init__.py -> build/lib/starfish/core/image/_registration/test 2020-02-13T08:58:32,381 creating build/lib/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:32,384 copying starfish/core/image/_registration/LearnTransform/_base.py -> build/lib/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:32,389 copying starfish/core/image/_registration/LearnTransform/translation.py -> build/lib/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:32,394 copying starfish/core/image/_registration/LearnTransform/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:32,398 creating build/lib/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:32,400 copying starfish/core/image/_registration/ApplyTransform/warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:32,404 copying starfish/core/image/_registration/ApplyTransform/_base.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:32,407 copying starfish/core/image/_registration/ApplyTransform/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:32,411 creating build/lib/starfish/core/image/_registration/LearnTransform/test 2020-02-13T08:58:32,413 copying starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2020-02-13T08:58:32,418 copying starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2020-02-13T08:58:32,424 creating build/lib/starfish/core/image/_registration/ApplyTransform/test 2020-02-13T08:58:32,426 copying starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2020-02-13T08:58:32,432 copying starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2020-02-13T08:58:32,438 creating build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,439 copying starfish/core/image/Filter/test/test_api_contract.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,443 copying starfish/core/image/Filter/test/test_filter.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,447 copying starfish/core/image/Filter/test/test_linear_unmixing.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,450 copying starfish/core/image/Filter/test/test_map.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,454 copying starfish/core/image/Filter/test/test_white_tophat.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,459 copying starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,463 copying starfish/core/image/Filter/test/test_histogram_matching.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,469 copying starfish/core/image/Filter/test/test_reduce.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,475 copying starfish/core/image/Filter/test/test_call_bases.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,478 copying starfish/core/image/Filter/test/__init__.py -> build/lib/starfish/core/image/Filter/test 2020-02-13T08:58:32,482 creating build/lib/starfish/core/morphology/Segment 2020-02-13T08:58:32,484 copying starfish/core/morphology/Segment/watershed.py -> build/lib/starfish/core/morphology/Segment 2020-02-13T08:58:32,487 copying starfish/core/morphology/Segment/_base.py -> build/lib/starfish/core/morphology/Segment 2020-02-13T08:58:32,491 copying starfish/core/morphology/Segment/__init__.py -> build/lib/starfish/core/morphology/Segment 2020-02-13T08:58:32,495 creating build/lib/starfish/core/morphology/Merge 2020-02-13T08:58:32,496 copying starfish/core/morphology/Merge/simple.py -> build/lib/starfish/core/morphology/Merge 2020-02-13T08:58:32,500 copying starfish/core/morphology/Merge/_base.py -> build/lib/starfish/core/morphology/Merge 2020-02-13T08:58:32,503 copying starfish/core/morphology/Merge/__init__.py -> build/lib/starfish/core/morphology/Merge 2020-02-13T08:58:32,507 creating build/lib/starfish/core/morphology/label_image 2020-02-13T08:58:32,509 copying starfish/core/morphology/label_image/label_image.py -> build/lib/starfish/core/morphology/label_image 2020-02-13T08:58:32,513 copying starfish/core/morphology/label_image/__init__.py -> build/lib/starfish/core/morphology/label_image 2020-02-13T08:58:32,519 creating build/lib/starfish/core/morphology/Binarize 2020-02-13T08:58:32,522 copying starfish/core/morphology/Binarize/threshold.py -> build/lib/starfish/core/morphology/Binarize 2020-02-13T08:58:32,527 copying starfish/core/morphology/Binarize/_base.py -> build/lib/starfish/core/morphology/Binarize 2020-02-13T08:58:32,532 copying starfish/core/morphology/Binarize/__init__.py -> build/lib/starfish/core/morphology/Binarize 2020-02-13T08:58:32,538 creating build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,539 copying starfish/core/morphology/Filter/reduce.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,543 copying starfish/core/morphology/Filter/structural_label.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,546 copying starfish/core/morphology/Filter/map.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,550 copying starfish/core/morphology/Filter/_base.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,553 copying starfish/core/morphology/Filter/areafilter.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,558 copying starfish/core/morphology/Filter/min_distance_label.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,562 copying starfish/core/morphology/Filter/__init__.py -> build/lib/starfish/core/morphology/Filter 2020-02-13T08:58:32,569 creating build/lib/starfish/core/morphology/binary_mask 2020-02-13T08:58:32,572 copying starfish/core/morphology/binary_mask/binary_mask.py -> build/lib/starfish/core/morphology/binary_mask 2020-02-13T08:58:32,579 copying starfish/core/morphology/binary_mask/expand.py -> build/lib/starfish/core/morphology/binary_mask 2020-02-13T08:58:32,582 copying starfish/core/morphology/binary_mask/_io.py -> build/lib/starfish/core/morphology/binary_mask 2020-02-13T08:58:32,586 copying starfish/core/morphology/binary_mask/__init__.py -> build/lib/starfish/core/morphology/binary_mask 2020-02-13T08:58:32,590 creating build/lib/starfish/core/morphology/Merge/test 2020-02-13T08:58:32,592 copying starfish/core/morphology/Merge/test/test_simple.py -> build/lib/starfish/core/morphology/Merge/test 2020-02-13T08:58:32,595 copying starfish/core/morphology/Merge/test/__init__.py -> build/lib/starfish/core/morphology/Merge/test 2020-02-13T08:58:32,600 creating build/lib/starfish/core/morphology/label_image/test 2020-02-13T08:58:32,603 copying starfish/core/morphology/label_image/test/test_label_image.py -> build/lib/starfish/core/morphology/label_image/test 2020-02-13T08:58:32,609 copying starfish/core/morphology/label_image/test/__init__.py -> build/lib/starfish/core/morphology/label_image/test 2020-02-13T08:58:32,615 creating build/lib/starfish/core/morphology/Binarize/test 2020-02-13T08:58:32,618 copying starfish/core/morphology/Binarize/test/test_threshold.py -> build/lib/starfish/core/morphology/Binarize/test 2020-02-13T08:58:32,623 copying starfish/core/morphology/Binarize/test/__init__.py -> build/lib/starfish/core/morphology/Binarize/test 2020-02-13T08:58:32,629 creating build/lib/starfish/core/morphology/Filter/test 2020-02-13T08:58:32,632 copying starfish/core/morphology/Filter/test/test_map.py -> build/lib/starfish/core/morphology/Filter/test 2020-02-13T08:58:32,637 copying starfish/core/morphology/Filter/test/test_reduce.py -> build/lib/starfish/core/morphology/Filter/test 2020-02-13T08:58:32,641 copying starfish/core/morphology/Filter/test/__init__.py -> build/lib/starfish/core/morphology/Filter/test 2020-02-13T08:58:32,643 copying starfish/core/morphology/Filter/test/test_areafilter.py -> build/lib/starfish/core/morphology/Filter/test 2020-02-13T08:58:32,648 creating build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,649 copying starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,654 copying starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,657 copying starfish/core/morphology/binary_mask/test/factories.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,661 copying starfish/core/morphology/binary_mask/test/test_expand.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,664 copying starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,668 copying starfish/core/morphology/binary_mask/test/__init__.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:32,673 creating build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,675 copying starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,678 copying starfish/core/imagestack/test/test_cropped_load.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,682 copying starfish/core/imagestack/test/test_export.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,685 copying starfish/core/imagestack/test/test_apply.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,689 copying starfish/core/imagestack/test/test_slice_ops.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,693 copying starfish/core/imagestack/test/test_from_numpy_array.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,696 copying starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,701 copying starfish/core/imagestack/test/test_from_tilefetcher.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,706 copying starfish/core/imagestack/test/imagestack_test_utils.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,712 copying starfish/core/imagestack/test/test_labeled_indices.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,718 copying starfish/core/imagestack/test/test_index.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,724 copying starfish/core/imagestack/test/test_metadata.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,732 copying starfish/core/imagestack/test/test_max_proj.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,736 copying starfish/core/imagestack/test/__init__.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,741 copying starfish/core/imagestack/test/test_coordinates.py -> build/lib/starfish/core/imagestack/test 2020-02-13T08:58:32,749 creating build/lib/starfish/core/imagestack/parser 2020-02-13T08:58:32,751 copying starfish/core/imagestack/parser/crop.py -> build/lib/starfish/core/imagestack/parser 2020-02-13T08:58:32,758 copying starfish/core/imagestack/parser/_tiledata.py -> build/lib/starfish/core/imagestack/parser 2020-02-13T08:58:32,765 copying starfish/core/imagestack/parser/_key.py -> build/lib/starfish/core/imagestack/parser 2020-02-13T08:58:32,768 copying starfish/core/imagestack/parser/__init__.py -> build/lib/starfish/core/imagestack/parser 2020-02-13T08:58:32,773 creating build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,774 copying starfish/core/imagestack/test/factories/from_codebook.py -> build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,778 copying starfish/core/imagestack/test/factories/unique_tiles.py -> build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,782 copying starfish/core/imagestack/test/factories/synthetic_stack.py -> build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,787 copying starfish/core/imagestack/test/factories/all_purpose.py -> build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,792 copying starfish/core/imagestack/test/factories/with_coords.py -> build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,797 copying starfish/core/imagestack/test/factories/__init__.py -> build/lib/starfish/core/imagestack/test/factories 2020-02-13T08:58:32,804 creating build/lib/starfish/core/imagestack/parser/tileset 2020-02-13T08:58:32,805 copying starfish/core/imagestack/parser/tileset/_parser.py -> build/lib/starfish/core/imagestack/parser/tileset 2020-02-13T08:58:32,810 copying starfish/core/imagestack/parser/tileset/__init__.py -> build/lib/starfish/core/imagestack/parser/tileset 2020-02-13T08:58:32,814 creating build/lib/starfish/core/imagestack/parser/tilefetcher 2020-02-13T08:58:32,816 copying starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2020-02-13T08:58:32,820 copying starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2020-02-13T08:58:32,826 creating build/lib/starfish/core/imagestack/parser/numpy 2020-02-13T08:58:32,828 copying starfish/core/imagestack/parser/numpy/__init__.py -> build/lib/starfish/core/imagestack/parser/numpy 2020-02-13T08:58:32,837 creating build/lib/starfish/core/types/test 2020-02-13T08:58:32,839 copying starfish/core/types/test/test_decoded_spots.py -> build/lib/starfish/core/types/test 2020-02-13T08:58:32,845 copying starfish/core/types/test/__init__.py -> build/lib/starfish/core/types/test 2020-02-13T08:58:32,851 creating build/lib/starfish/core/util/test 2020-02-13T08:58:32,854 copying starfish/core/util/test/test_preserve_float_range.py -> build/lib/starfish/core/util/test 2020-02-13T08:58:32,861 copying starfish/core/util/test/test_levels.py -> build/lib/starfish/core/util/test 2020-02-13T08:58:32,866 copying starfish/core/util/test/__init__.py -> build/lib/starfish/core/util/test 2020-02-13T08:58:32,870 creating build/lib/starfish/core/util/click 2020-02-13T08:58:32,872 copying starfish/core/util/click/__init__.py -> build/lib/starfish/core/util/click 2020-02-13T08:58:32,877 creating build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,879 copying starfish/core/experiment/builder/inplace.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,883 copying starfish/core/experiment/builder/orderediterator.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,888 copying starfish/core/experiment/builder/builder.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,896 copying starfish/core/experiment/builder/providers.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,901 copying starfish/core/experiment/builder/structured_formatter.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,907 copying starfish/core/experiment/builder/defaultproviders.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,911 copying starfish/core/experiment/builder/__init__.py -> build/lib/starfish/core/experiment/builder 2020-02-13T08:58:32,915 creating build/lib/starfish/core/experiment/test 2020-02-13T08:58:32,917 copying starfish/core/experiment/test/test_version.py -> build/lib/starfish/core/experiment/test 2020-02-13T08:58:32,921 copying starfish/core/experiment/test/test_experiment.py -> build/lib/starfish/core/experiment/test 2020-02-13T08:58:32,925 copying starfish/core/experiment/test/__init__.py -> build/lib/starfish/core/experiment/test 2020-02-13T08:58:32,932 creating build/lib/starfish/core/experiment/builder/test 2020-02-13T08:58:32,935 copying starfish/core/experiment/builder/test/test_small_axis.py -> build/lib/starfish/core/experiment/builder/test 2020-02-13T08:58:32,941 copying starfish/core/experiment/builder/test/test_orderediterator.py -> build/lib/starfish/core/experiment/builder/test 2020-02-13T08:58:32,946 copying starfish/core/experiment/builder/test/__init__.py -> build/lib/starfish/core/experiment/builder/test 2020-02-13T08:58:32,949 copying starfish/core/experiment/builder/test/test_inplace.py -> build/lib/starfish/core/experiment/builder/test 2020-02-13T08:58:32,954 creating build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:32,956 copying starfish/core/experiment/builder/test/structured_formatter/util.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:32,960 copying starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:32,964 copying starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:32,969 copying starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:32,973 copying starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:32,981 creating build/lib/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:32,984 copying starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/lib/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:32,989 copying starfish/core/experiment/builder/test/factories/all_purpose.py -> build/lib/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:32,993 copying starfish/core/experiment/builder/test/factories/__init__.py -> build/lib/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:32,998 creating build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,000 copying starfish/core/codebook/test/test_metric_decode.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,005 copying starfish/core/codebook/test/test_from_code_array.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,011 copying starfish/core/codebook/test/test_normalize_code_traces.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,017 copying starfish/core/codebook/test/test_code_length.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,022 copying starfish/core/codebook/test/test_approximate_nearest_code.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,027 copying starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,031 copying starfish/core/codebook/test/test_to_json.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,034 copying starfish/core/codebook/test/factories.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,037 copying starfish/core/codebook/test/__init__.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,040 copying starfish/core/codebook/test/test_per_round_max_decode.py -> build/lib/starfish/core/codebook/test 2020-02-13T08:58:33,045 creating build/lib/starfish/core/expression_matrix/test 2020-02-13T08:58:33,047 copying starfish/core/expression_matrix/test/test_concatenate.py -> build/lib/starfish/core/expression_matrix/test 2020-02-13T08:58:33,052 copying starfish/core/expression_matrix/test/__init__.py -> build/lib/starfish/core/expression_matrix/test 2020-02-13T08:58:33,057 copying starfish/core/expression_matrix/test/test_serialization.py -> build/lib/starfish/core/expression_matrix/test 2020-02-13T08:58:33,065 creating build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,069 copying starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,074 copying starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,078 copying starfish/core/spots/FindSpots/spot_finding_utils.py -> build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,083 copying starfish/core/spots/FindSpots/blob.py -> build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,087 copying starfish/core/spots/FindSpots/_base.py -> build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,091 copying starfish/core/spots/FindSpots/__init__.py -> build/lib/starfish/core/spots/FindSpots 2020-02-13T08:58:33,099 creating build/lib/starfish/core/spots/AssignTargets 2020-02-13T08:58:33,101 copying starfish/core/spots/AssignTargets/_base.py -> build/lib/starfish/core/spots/AssignTargets 2020-02-13T08:58:33,108 copying starfish/core/spots/AssignTargets/label.py -> build/lib/starfish/core/spots/AssignTargets 2020-02-13T08:58:33,112 copying starfish/core/spots/AssignTargets/__init__.py -> build/lib/starfish/core/spots/AssignTargets 2020-02-13T08:58:33,117 creating build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,119 copying starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,123 copying starfish/core/spots/DecodeSpots/util.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,127 copying starfish/core/spots/DecodeSpots/trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,131 copying starfish/core/spots/DecodeSpots/_base.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,137 copying starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,141 copying starfish/core/spots/DecodeSpots/__init__.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,147 copying starfish/core/spots/DecodeSpots/metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2020-02-13T08:58:33,153 creating build/lib/starfish/core/spots/DetectPixels 2020-02-13T08:58:33,155 copying starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/lib/starfish/core/spots/DetectPixels 2020-02-13T08:58:33,160 copying starfish/core/spots/DetectPixels/_base.py -> build/lib/starfish/core/spots/DetectPixels 2020-02-13T08:58:33,163 copying starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/lib/starfish/core/spots/DetectPixels 2020-02-13T08:58:33,167 copying starfish/core/spots/DetectPixels/__init__.py -> build/lib/starfish/core/spots/DetectPixels 2020-02-13T08:58:33,172 creating build/lib/starfish/core/spots/FindSpots/test 2020-02-13T08:58:33,175 copying starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/lib/starfish/core/spots/FindSpots/test 2020-02-13T08:58:33,181 copying starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/lib/starfish/core/spots/FindSpots/test 2020-02-13T08:58:33,187 copying starfish/core/spots/FindSpots/test/__init__.py -> build/lib/starfish/core/spots/FindSpots/test 2020-02-13T08:58:33,193 creating build/lib/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:33,195 copying starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:33,199 copying starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:33,203 copying starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:33,208 copying starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:33,213 copying starfish/core/spots/DecodeSpots/test/__init__.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:33,220 creating build/lib/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:33,223 copying starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:33,229 copying starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:33,233 copying starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:33,237 copying starfish/core/spots/DetectPixels/test/__init__.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:33,240 copying starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:33,245 running egg_info 2020-02-13T08:58:33,259 writing starfish.egg-info/PKG-INFO 2020-02-13T08:58:33,262 writing dependency_links to starfish.egg-info/dependency_links.txt 2020-02-13T08:58:33,265 writing entry points to starfish.egg-info/entry_points.txt 2020-02-13T08:58:33,267 writing requirements to starfish.egg-info/requires.txt 2020-02-13T08:58:33,269 writing top-level names to starfish.egg-info/top_level.txt 2020-02-13T08:58:33,345 reading manifest file 'starfish.egg-info/SOURCES.txt' 2020-02-13T08:58:33,371 reading manifest template 'MANIFEST.in' 2020-02-13T08:58:33,459 writing manifest file 'starfish.egg-info/SOURCES.txt' 2020-02-13T08:58:33,483 copying starfish/REQUIREMENTS-STRICT.txt -> build/lib/starfish 2020-02-13T08:58:33,487 creating build/lib/starfish/spacetx_format 2020-02-13T08:58:33,488 creating build/lib/starfish/spacetx_format/examples 2020-02-13T08:58:33,489 creating build/lib/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,491 copying starfish/spacetx_format/examples/codebook/codebook.json -> build/lib/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,495 copying starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/lib/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,498 copying starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/lib/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,502 creating build/lib/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,503 copying starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,509 copying starfish/spacetx_format/examples/experiment/experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,515 copying starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/lib/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,520 creating build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,522 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,528 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,533 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,538 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,544 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,548 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,552 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,556 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,559 copying starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,563 copying starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,566 copying starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,571 copying starfish/spacetx_format/examples/field_of_view/too_large.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,576 creating build/lib/starfish/spacetx_format/examples/fov_manifest 2020-02-13T08:58:33,578 copying starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/lib/starfish/spacetx_format/examples/fov_manifest 2020-02-13T08:58:33,583 creating build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,585 copying starfish/spacetx_format/schema/experiment_4.0.0.json -> build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,590 copying starfish/spacetx_format/schema/experiment_5.0.0.json -> build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,593 copying starfish/spacetx_format/schema/extras.json -> build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,597 copying starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,600 copying starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,603 copying starfish/spacetx_format/schema/version.json -> build/lib/starfish/spacetx_format/schema 2020-02-13T08:58:33,606 creating build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2020-02-13T08:58:33,608 copying starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2020-02-13T08:58:33,613 copying starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2020-02-13T08:58:33,618 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-02-13T08:58:33,620 copying starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-02-13T08:58:33,626 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,628 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,631 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,635 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,638 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-02-13T08:58:33,639 copying starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-02-13T08:58:33,643 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,644 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,647 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,653 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,730 UPDATING build/lib/starfish/core/_version.py 2020-02-13T08:58:33,732 set build/lib/starfish/core/_version.py to '0.2.0' 2020-02-13T08:58:33,737 installing to build/bdist.linux-armv7l/wheel 2020-02-13T08:58:33,738 running install 2020-02-13T08:58:33,739 running install_lib 2020-02-13T08:58:33,745 creating build/bdist.linux-armv7l 2020-02-13T08:58:33,745 creating build/bdist.linux-armv7l/wheel 2020-02-13T08:58:33,749 creating build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:33,750 copying build/lib/starfish/REQUIREMENTS-STRICT.txt -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:33,754 copying build/lib/starfish/types.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:33,758 creating build/bdist.linux-armv7l/wheel/starfish/test 2020-02-13T08:58:33,760 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines 2020-02-13T08:58:33,763 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,765 copying build/lib/starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,768 copying build/lib/starfish/test/full_pipelines/api/test_dartfish.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,772 copying build/lib/starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,777 copying build/lib/starfish/test/full_pipelines/api/test_merfish.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,783 copying build/lib/starfish/test/full_pipelines/api/test_iss_api.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,789 copying build/lib/starfish/test/full_pipelines/api/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-02-13T08:58:33,793 copying build/lib/starfish/test/full_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines 2020-02-13T08:58:33,797 copying build/lib/starfish/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/test 2020-02-13T08:58:33,801 copying build/lib/starfish/config.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:33,805 copying build/lib/starfish/data.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:33,812 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format 2020-02-13T08:58:33,815 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples 2020-02-13T08:58:33,818 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,819 copying build/lib/starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,822 copying build/lib/starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,825 copying build/lib/starfish/spacetx_format/examples/experiment/experiment.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-02-13T08:58:33,829 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,831 copying build/lib/starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,835 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,841 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,846 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,851 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,856 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,860 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,865 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,869 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,873 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,877 copying build/lib/starfish/spacetx_format/examples/field_of_view/too_large.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,880 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-02-13T08:58:33,884 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,886 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,889 copying build/lib/starfish/spacetx_format/examples/codebook/codebook.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,892 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-02-13T08:58:33,897 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/fov_manifest 2020-02-13T08:58:33,899 copying build/lib/starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/fov_manifest 2020-02-13T08:58:33,906 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,908 copying build/lib/starfish/spacetx_format/schema/experiment_5.0.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,913 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,918 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-02-13T08:58:33,920 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-02-13T08:58:33,924 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,926 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,930 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,933 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-02-13T08:58:33,937 copying build/lib/starfish/spacetx_format/schema/experiment_4.0.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,942 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,947 copying build/lib/starfish/spacetx_format/schema/version.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,953 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2020-02-13T08:58:33,955 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2020-02-13T08:58:33,959 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2020-02-13T08:58:33,964 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-02-13T08:58:33,965 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-02-13T08:58:33,970 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,972 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,975 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,980 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-02-13T08:58:33,985 copying build/lib/starfish/spacetx_format/schema/extras.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-02-13T08:58:33,990 copying build/lib/starfish/spots.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:33,996 creating build/bdist.linux-armv7l/wheel/starfish/util 2020-02-13T08:58:33,998 copying build/lib/starfish/util/plot.py -> build/bdist.linux-armv7l/wheel/starfish/util 2020-02-13T08:58:34,004 copying build/lib/starfish/util/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/util 2020-02-13T08:58:34,008 copying build/lib/starfish/__main__.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:34,013 copying build/lib/starfish/image.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:34,019 creating build/bdist.linux-armv7l/wheel/starfish/experiment 2020-02-13T08:58:34,020 copying build/lib/starfish/experiment/builder.py -> build/bdist.linux-armv7l/wheel/starfish/experiment 2020-02-13T08:58:34,024 copying build/lib/starfish/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/experiment 2020-02-13T08:58:34,027 copying build/lib/starfish/morphology.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:34,031 creating build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:34,033 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,035 copying build/lib/starfish/core/intensity_table/decoded_intensity_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,042 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,044 copying build/lib/starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,050 copying build/lib/starfish/core/intensity_table/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,054 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,060 copying build/lib/starfish/core/intensity_table/test/test_to_mermaid.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,065 copying build/lib/starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,070 copying build/lib/starfish/core/intensity_table/test/test_overlap.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,075 copying build/lib/starfish/core/intensity_table/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,080 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,083 copying build/lib/starfish/core/intensity_table/test/test_from_imagestack.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,086 copying build/lib/starfish/core/intensity_table/test/test_from_spot_data.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,089 copying build/lib/starfish/core/intensity_table/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,092 copying build/lib/starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-02-13T08:58:34,095 copying build/lib/starfish/core/intensity_table/concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,098 copying build/lib/starfish/core/intensity_table/intensity_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,104 copying build/lib/starfish/core/intensity_table/intensity_table_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,109 copying build/lib/starfish/core/intensity_table/overlap.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,115 copying build/lib/starfish/core/intensity_table/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-02-13T08:58:34,120 creating build/bdist.linux-armv7l/wheel/starfish/core/config 2020-02-13T08:58:34,123 creating build/bdist.linux-armv7l/wheel/starfish/core/config/test 2020-02-13T08:58:34,126 copying build/lib/starfish/core/config/test/test_config.py -> build/bdist.linux-armv7l/wheel/starfish/core/config/test 2020-02-13T08:58:34,133 copying build/lib/starfish/core/config/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/config/test 2020-02-13T08:58:34,137 copying build/lib/starfish/core/config/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/config 2020-02-13T08:58:34,143 creating build/bdist.linux-armv7l/wheel/starfish/core/image 2020-02-13T08:58:34,145 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-02-13T08:58:34,147 copying build/lib/starfish/core/image/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-02-13T08:58:34,151 copying build/lib/starfish/core/image/Segment/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-02-13T08:58:34,154 copying build/lib/starfish/core/image/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-02-13T08:58:34,159 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-02-13T08:58:34,161 copying build/lib/starfish/core/image/_registration/_format.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-02-13T08:58:34,166 copying build/lib/starfish/core/image/_registration/transforms_list.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-02-13T08:58:34,173 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2020-02-13T08:58:34,176 copying build/lib/starfish/core/image/_registration/test/test_transforms_list.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2020-02-13T08:58:34,181 copying build/lib/starfish/core/image/_registration/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2020-02-13T08:58:34,187 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:34,191 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2020-02-13T08:58:34,194 copying build/lib/starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2020-02-13T08:58:34,199 copying build/lib/starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2020-02-13T08:58:34,203 copying build/lib/starfish/core/image/_registration/LearnTransform/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:34,206 copying build/lib/starfish/core/image/_registration/LearnTransform/translation.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:34,214 copying build/lib/starfish/core/image/_registration/LearnTransform/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-02-13T08:58:34,218 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:34,220 copying build/lib/starfish/core/image/_registration/ApplyTransform/warp.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:34,227 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2020-02-13T08:58:34,229 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2020-02-13T08:58:34,235 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2020-02-13T08:58:34,240 copying build/lib/starfish/core/image/_registration/ApplyTransform/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:34,245 copying build/lib/starfish/core/image/_registration/ApplyTransform/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-02-13T08:58:34,250 copying build/lib/starfish/core/image/_registration/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-02-13T08:58:34,256 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,258 copying build/lib/starfish/core/image/Filter/call_bases.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,263 copying build/lib/starfish/core/image/Filter/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,267 copying build/lib/starfish/core/image/Filter/element_wise_mult.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,270 copying build/lib/starfish/core/image/Filter/mean_high_pass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,274 copying build/lib/starfish/core/image/Filter/match_histograms.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,277 copying build/lib/starfish/core/image/Filter/white_tophat.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,281 copying build/lib/starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,287 copying build/lib/starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,300 copying build/lib/starfish/core/image/Filter/clip_value_to_zero.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,306 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,308 copying build/lib/starfish/core/image/Filter/test/test_api_contract.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,314 copying build/lib/starfish/core/image/Filter/test/test_filter.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,319 copying build/lib/starfish/core/image/Filter/test/test_linear_unmixing.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,323 copying build/lib/starfish/core/image/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,326 copying build/lib/starfish/core/image/Filter/test/test_white_tophat.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,330 copying build/lib/starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,333 copying build/lib/starfish/core/image/Filter/test/test_histogram_matching.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,336 copying build/lib/starfish/core/image/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,339 copying build/lib/starfish/core/image/Filter/test/test_call_bases.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,343 copying build/lib/starfish/core/image/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-02-13T08:58:34,346 copying build/lib/starfish/core/image/Filter/gaussian_high_pass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,350 copying build/lib/starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,353 copying build/lib/starfish/core/image/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,357 copying build/lib/starfish/core/image/Filter/linear_unmixing.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,361 copying build/lib/starfish/core/image/Filter/map.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,366 copying build/lib/starfish/core/image/Filter/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,371 copying build/lib/starfish/core/image/Filter/bandpass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,377 copying build/lib/starfish/core/image/Filter/gaussian_low_pass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,382 copying build/lib/starfish/core/image/Filter/laplace.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,387 copying build/lib/starfish/core/image/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,390 copying build/lib/starfish/core/image/Filter/clip_percentile_to_zero.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,394 copying build/lib/starfish/core/image/Filter/clip.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-02-13T08:58:34,399 copying build/lib/starfish/core/image/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image 2020-02-13T08:58:34,403 creating build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2020-02-13T08:58:34,405 copying build/lib/starfish/core/segmentation_mask/segmentation_mask.py -> build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2020-02-13T08:58:34,410 copying build/lib/starfish/core/segmentation_mask/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2020-02-13T08:58:34,417 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology 2020-02-13T08:58:34,421 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-02-13T08:58:34,424 copying build/lib/starfish/core/morphology/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-02-13T08:58:34,428 copying build/lib/starfish/core/morphology/Segment/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-02-13T08:58:34,431 copying build/lib/starfish/core/morphology/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-02-13T08:58:34,436 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-02-13T08:58:34,438 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2020-02-13T08:58:34,440 copying build/lib/starfish/core/morphology/Merge/test/test_simple.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2020-02-13T08:58:34,444 copying build/lib/starfish/core/morphology/Merge/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2020-02-13T08:58:34,448 copying build/lib/starfish/core/morphology/Merge/simple.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-02-13T08:58:34,453 copying build/lib/starfish/core/morphology/Merge/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-02-13T08:58:34,458 copying build/lib/starfish/core/morphology/Merge/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-02-13T08:58:34,463 copying build/lib/starfish/core/morphology/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology 2020-02-13T08:58:34,468 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2020-02-13T08:58:34,470 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2020-02-13T08:58:34,472 copying build/lib/starfish/core/morphology/label_image/test/test_label_image.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2020-02-13T08:58:34,477 copying build/lib/starfish/core/morphology/label_image/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2020-02-13T08:58:34,480 copying build/lib/starfish/core/morphology/label_image/label_image.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2020-02-13T08:58:34,484 copying build/lib/starfish/core/morphology/label_image/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2020-02-13T08:58:34,490 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-02-13T08:58:34,492 copying build/lib/starfish/core/morphology/Binarize/threshold.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-02-13T08:58:34,499 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2020-02-13T08:58:34,502 copying build/lib/starfish/core/morphology/Binarize/test/test_threshold.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2020-02-13T08:58:34,507 copying build/lib/starfish/core/morphology/Binarize/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2020-02-13T08:58:34,510 copying build/lib/starfish/core/morphology/Binarize/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-02-13T08:58:34,513 copying build/lib/starfish/core/morphology/Binarize/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-02-13T08:58:34,517 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,520 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-02-13T08:58:34,522 copying build/lib/starfish/core/morphology/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-02-13T08:58:34,525 copying build/lib/starfish/core/morphology/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-02-13T08:58:34,530 copying build/lib/starfish/core/morphology/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-02-13T08:58:34,535 copying build/lib/starfish/core/morphology/Filter/test/test_areafilter.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-02-13T08:58:34,540 copying build/lib/starfish/core/morphology/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,545 copying build/lib/starfish/core/morphology/Filter/structural_label.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,549 copying build/lib/starfish/core/morphology/Filter/map.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,552 copying build/lib/starfish/core/morphology/Filter/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,556 copying build/lib/starfish/core/morphology/Filter/areafilter.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,559 copying build/lib/starfish/core/morphology/Filter/min_distance_label.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,562 copying build/lib/starfish/core/morphology/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-02-13T08:58:34,566 copying build/lib/starfish/core/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology 2020-02-13T08:58:34,572 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-02-13T08:58:34,574 copying build/lib/starfish/core/morphology/binary_mask/binary_mask.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-02-13T08:58:34,583 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,585 copying build/lib/starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,591 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,595 copying build/lib/starfish/core/morphology/binary_mask/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,599 copying build/lib/starfish/core/morphology/binary_mask/test/test_expand.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,602 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,607 copying build/lib/starfish/core/morphology/binary_mask/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-02-13T08:58:34,611 copying build/lib/starfish/core/morphology/binary_mask/expand.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-02-13T08:58:34,616 copying build/lib/starfish/core/morphology/binary_mask/_io.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-02-13T08:58:34,622 copying build/lib/starfish/core/morphology/binary_mask/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-02-13T08:58:34,629 creating build/bdist.linux-armv7l/wheel/starfish/core/test 2020-02-13T08:58:34,631 copying build/lib/starfish/core/test/test_synthetic_spot_creation.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-02-13T08:58:34,635 copying build/lib/starfish/core/test/test_multiprocessing_workflow.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-02-13T08:58:34,639 copying build/lib/starfish/core/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-02-13T08:58:34,644 copying build/lib/starfish/core/test/test_display.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-02-13T08:58:34,648 copying build/lib/starfish/core/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-02-13T08:58:34,654 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-02-13T08:58:34,657 copying build/lib/starfish/core/imagestack/indexing_utils.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-02-13T08:58:34,664 copying build/lib/starfish/core/imagestack/imagestack.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-02-13T08:58:34,672 copying build/lib/starfish/core/imagestack/physical_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-02-13T08:58:34,677 copying build/lib/starfish/core/imagestack/dataorder.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-02-13T08:58:34,684 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,687 copying build/lib/starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,692 copying build/lib/starfish/core/imagestack/test/test_cropped_load.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,696 copying build/lib/starfish/core/imagestack/test/test_export.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,700 copying build/lib/starfish/core/imagestack/test/test_apply.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,704 copying build/lib/starfish/core/imagestack/test/test_slice_ops.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,708 copying build/lib/starfish/core/imagestack/test/test_from_numpy_array.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,712 copying build/lib/starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,716 copying build/lib/starfish/core/imagestack/test/test_from_tilefetcher.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,719 copying build/lib/starfish/core/imagestack/test/imagestack_test_utils.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,725 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,727 copying build/lib/starfish/core/imagestack/test/factories/from_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,732 copying build/lib/starfish/core/imagestack/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,737 copying build/lib/starfish/core/imagestack/test/factories/synthetic_stack.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,742 copying build/lib/starfish/core/imagestack/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,748 copying build/lib/starfish/core/imagestack/test/factories/with_coords.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,752 copying build/lib/starfish/core/imagestack/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-02-13T08:58:34,755 copying build/lib/starfish/core/imagestack/test/test_labeled_indices.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,759 copying build/lib/starfish/core/imagestack/test/test_index.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,763 copying build/lib/starfish/core/imagestack/test/test_metadata.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,767 copying build/lib/starfish/core/imagestack/test/test_max_proj.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,771 copying build/lib/starfish/core/imagestack/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,774 copying build/lib/starfish/core/imagestack/test/test_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-02-13T08:58:34,779 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-02-13T08:58:34,781 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2020-02-13T08:58:34,783 copying build/lib/starfish/core/imagestack/parser/tileset/_parser.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2020-02-13T08:58:34,787 copying build/lib/starfish/core/imagestack/parser/tileset/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2020-02-13T08:58:34,792 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2020-02-13T08:58:34,793 copying build/lib/starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2020-02-13T08:58:34,798 copying build/lib/starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2020-02-13T08:58:34,801 copying build/lib/starfish/core/imagestack/parser/crop.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-02-13T08:58:34,805 copying build/lib/starfish/core/imagestack/parser/_tiledata.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-02-13T08:58:34,808 copying build/lib/starfish/core/imagestack/parser/_key.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-02-13T08:58:34,813 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/numpy 2020-02-13T08:58:34,814 copying build/lib/starfish/core/imagestack/parser/numpy/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/numpy 2020-02-13T08:58:34,818 copying build/lib/starfish/core/imagestack/parser/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-02-13T08:58:34,821 copying build/lib/starfish/core/imagestack/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-02-13T08:58:34,824 copying build/lib/starfish/core/errors.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:34,828 creating build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,830 creating build/bdist.linux-armv7l/wheel/starfish/core/types/test 2020-02-13T08:58:34,832 copying build/lib/starfish/core/types/test/test_decoded_spots.py -> build/bdist.linux-armv7l/wheel/starfish/core/types/test 2020-02-13T08:58:34,839 copying build/lib/starfish/core/types/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/types/test 2020-02-13T08:58:34,841 copying build/lib/starfish/core/types/_spot_attributes.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,845 copying build/lib/starfish/core/types/_validated_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,848 copying build/lib/starfish/core/types/_constants.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,851 copying build/lib/starfish/core/types/_decoded_spots.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,856 copying build/lib/starfish/core/types/_functionsource.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,861 copying build/lib/starfish/core/types/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,867 copying build/lib/starfish/core/types/_spot_finding_results.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-02-13T08:58:34,874 creating build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,875 copying build/lib/starfish/core/spacetx_format/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,880 copying build/lib/starfish/core/spacetx_format/test_field_of_view.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,883 copying build/lib/starfish/core/spacetx_format/test_fuzz.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,887 copying build/lib/starfish/core/spacetx_format/cli.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,891 copying build/lib/starfish/core/spacetx_format/test_fov_manifest.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,895 copying build/lib/starfish/core/spacetx_format/test_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,898 copying build/lib/starfish/core/spacetx_format/validate_sptx.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,902 copying build/lib/starfish/core/spacetx_format/test_experiment.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,906 copying build/lib/starfish/core/spacetx_format/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,908 copying build/lib/starfish/core/spacetx_format/test_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-02-13T08:58:34,914 creating build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,916 copying build/lib/starfish/core/util/levels.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,924 creating build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-02-13T08:58:34,926 copying build/lib/starfish/core/util/test/test_preserve_float_range.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-02-13T08:58:34,933 copying build/lib/starfish/core/util/test/test_levels.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-02-13T08:58:34,939 copying build/lib/starfish/core/util/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-02-13T08:58:34,943 copying build/lib/starfish/core/util/try_import.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,948 copying build/lib/starfish/core/util/config.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,953 copying build/lib/starfish/core/util/enum.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,957 copying build/lib/starfish/core/util/clock.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,961 copying build/lib/starfish/core/util/exec.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,965 copying build/lib/starfish/core/util/argparse.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,969 creating build/bdist.linux-armv7l/wheel/starfish/core/util/click 2020-02-13T08:58:34,971 copying build/lib/starfish/core/util/click/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/click 2020-02-13T08:58:34,976 copying build/lib/starfish/core/util/logging.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,981 copying build/lib/starfish/core/util/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-02-13T08:58:34,987 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-02-13T08:58:34,989 copying build/lib/starfish/core/experiment/experiment.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-02-13T08:58:34,997 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:34,999 copying build/lib/starfish/core/experiment/builder/inplace.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,002 copying build/lib/starfish/core/experiment/builder/orderediterator.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,006 copying build/lib/starfish/core/experiment/builder/builder.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,010 copying build/lib/starfish/core/experiment/builder/providers.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,014 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-02-13T08:58:35,016 copying build/lib/starfish/core/experiment/builder/test/test_small_axis.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-02-13T08:58:35,019 copying build/lib/starfish/core/experiment/builder/test/test_orderediterator.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-02-13T08:58:35,023 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:35,025 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:35,029 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:35,033 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:35,037 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:35,040 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-02-13T08:58:35,045 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:35,047 copying build/lib/starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:35,050 copying build/lib/starfish/core/experiment/builder/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:35,054 copying build/lib/starfish/core/experiment/builder/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-02-13T08:58:35,057 copying build/lib/starfish/core/experiment/builder/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-02-13T08:58:35,060 copying build/lib/starfish/core/experiment/builder/test/test_inplace.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-02-13T08:58:35,064 copying build/lib/starfish/core/experiment/builder/structured_formatter.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,068 copying build/lib/starfish/core/experiment/builder/defaultproviders.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,072 copying build/lib/starfish/core/experiment/builder/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-02-13T08:58:35,075 copying build/lib/starfish/core/experiment/version.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-02-13T08:58:35,080 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-02-13T08:58:35,082 copying build/lib/starfish/core/experiment/test/test_version.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-02-13T08:58:35,085 copying build/lib/starfish/core/experiment/test/test_experiment.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-02-13T08:58:35,089 copying build/lib/starfish/core/experiment/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-02-13T08:58:35,092 copying build/lib/starfish/core/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-02-13T08:58:35,096 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-02-13T08:58:35,097 copying build/lib/starfish/core/codebook/_format.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-02-13T08:58:35,101 copying build/lib/starfish/core/codebook/codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-02-13T08:58:35,107 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,109 copying build/lib/starfish/core/codebook/test/test_metric_decode.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,113 copying build/lib/starfish/core/codebook/test/test_from_code_array.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,117 copying build/lib/starfish/core/codebook/test/test_normalize_code_traces.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,120 copying build/lib/starfish/core/codebook/test/test_code_length.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,124 copying build/lib/starfish/core/codebook/test/test_approximate_nearest_code.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,127 copying build/lib/starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,130 copying build/lib/starfish/core/codebook/test/test_to_json.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,133 copying build/lib/starfish/core/codebook/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,137 copying build/lib/starfish/core/codebook/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,139 copying build/lib/starfish/core/codebook/test/test_per_round_max_decode.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-02-13T08:58:35,143 copying build/lib/starfish/core/codebook/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-02-13T08:58:35,145 copying build/lib/starfish/core/_display.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:35,150 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-02-13T08:58:35,152 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-02-13T08:58:35,154 copying build/lib/starfish/core/expression_matrix/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-02-13T08:58:35,157 copying build/lib/starfish/core/expression_matrix/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-02-13T08:58:35,160 copying build/lib/starfish/core/expression_matrix/test/test_serialization.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-02-13T08:58:35,163 copying build/lib/starfish/core/expression_matrix/concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-02-13T08:58:35,166 copying build/lib/starfish/core/expression_matrix/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-02-13T08:58:35,169 copying build/lib/starfish/core/expression_matrix/expression_matrix.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-02-13T08:58:35,172 copying build/lib/starfish/core/compat.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:35,177 creating build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2020-02-13T08:58:35,178 copying build/lib/starfish/core/pipeline/algorithmbase.py -> build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2020-02-13T08:58:35,182 copying build/lib/starfish/core/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2020-02-13T08:58:35,185 creating build/bdist.linux-armv7l/wheel/starfish/core/spots 2020-02-13T08:58:35,188 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,189 copying build/lib/starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,195 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-02-13T08:58:35,197 copying build/lib/starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-02-13T08:58:35,200 copying build/lib/starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-02-13T08:58:35,204 copying build/lib/starfish/core/spots/FindSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-02-13T08:58:35,207 copying build/lib/starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,211 copying build/lib/starfish/core/spots/FindSpots/spot_finding_utils.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,214 copying build/lib/starfish/core/spots/FindSpots/blob.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,218 copying build/lib/starfish/core/spots/FindSpots/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,221 copying build/lib/starfish/core/spots/FindSpots/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-02-13T08:58:35,226 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-02-13T08:58:35,227 copying build/lib/starfish/core/spots/AssignTargets/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-02-13T08:58:35,231 copying build/lib/starfish/core/spots/AssignTargets/label.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-02-13T08:58:35,234 copying build/lib/starfish/core/spots/AssignTargets/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-02-13T08:58:35,238 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,240 copying build/lib/starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,244 copying build/lib/starfish/core/spots/DecodeSpots/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,247 copying build/lib/starfish/core/spots/DecodeSpots/trace_builders.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,252 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:35,253 copying build/lib/starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:35,257 copying build/lib/starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:35,260 copying build/lib/starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:35,264 copying build/lib/starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:35,270 copying build/lib/starfish/core/spots/DecodeSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-02-13T08:58:35,272 copying build/lib/starfish/core/spots/DecodeSpots/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,276 copying build/lib/starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,280 copying build/lib/starfish/core/spots/DecodeSpots/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,283 copying build/lib/starfish/core/spots/DecodeSpots/metric_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-02-13T08:58:35,286 copying build/lib/starfish/core/spots/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots 2020-02-13T08:58:35,290 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-02-13T08:58:35,292 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:35,294 copying build/lib/starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:35,298 copying build/lib/starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:35,301 copying build/lib/starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:35,304 copying build/lib/starfish/core/spots/DetectPixels/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:35,306 copying build/lib/starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-02-13T08:58:35,309 copying build/lib/starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-02-13T08:58:35,313 copying build/lib/starfish/core/spots/DetectPixels/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-02-13T08:58:35,316 copying build/lib/starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-02-13T08:58:35,320 copying build/lib/starfish/core/spots/DetectPixels/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-02-13T08:58:35,323 copying build/lib/starfish/core/_version.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:35,327 copying build/lib/starfish/core/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:35,330 copying build/lib/starfish/core/starfish.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-02-13T08:58:35,333 copying build/lib/starfish/__init__.py -> build/bdist.linux-armv7l/wheel/starfish 2020-02-13T08:58:35,336 running install_egg_info 2020-02-13T08:58:35,348 Copying starfish.egg-info to build/bdist.linux-armv7l/wheel/starfish-0.2.0-py3.7.egg-info 2020-02-13T08:58:35,370 running install_scripts 2020-02-13T08:58:35,534 creating build/bdist.linux-armv7l/wheel/starfish-0.2.0.dist-info/WHEEL 2020-02-13T08:58:35,538 creating '/tmp/pip-wheel-m08hea73/starfish-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-02-13T08:58:35,543 adding 'starfish/REQUIREMENTS-STRICT.txt' 2020-02-13T08:58:35,545 adding 'starfish/__init__.py' 2020-02-13T08:58:35,547 adding 'starfish/__main__.py' 2020-02-13T08:58:35,549 adding 'starfish/config.py' 2020-02-13T08:58:35,551 adding 'starfish/data.py' 2020-02-13T08:58:35,553 adding 'starfish/image.py' 2020-02-13T08:58:35,555 adding 'starfish/morphology.py' 2020-02-13T08:58:35,557 adding 'starfish/spots.py' 2020-02-13T08:58:35,560 adding 'starfish/types.py' 2020-02-13T08:58:35,563 adding 'starfish/core/__init__.py' 2020-02-13T08:58:35,566 adding 'starfish/core/_display.py' 2020-02-13T08:58:35,568 adding 'starfish/core/_version.py' 2020-02-13T08:58:35,572 adding 'starfish/core/compat.py' 2020-02-13T08:58:35,575 adding 'starfish/core/errors.py' 2020-02-13T08:58:35,577 adding 'starfish/core/starfish.py' 2020-02-13T08:58:35,580 adding 'starfish/core/codebook/__init__.py' 2020-02-13T08:58:35,582 adding 'starfish/core/codebook/_format.py' 2020-02-13T08:58:35,588 adding 'starfish/core/codebook/codebook.py' 2020-02-13T08:58:35,591 adding 'starfish/core/codebook/test/__init__.py' 2020-02-13T08:58:35,594 adding 'starfish/core/codebook/test/factories.py' 2020-02-13T08:58:35,596 adding 'starfish/core/codebook/test/test_approximate_nearest_code.py' 2020-02-13T08:58:35,598 adding 'starfish/core/codebook/test/test_code_length.py' 2020-02-13T08:58:35,601 adding 'starfish/core/codebook/test/test_from_code_array.py' 2020-02-13T08:58:35,603 adding 'starfish/core/codebook/test/test_metric_decode.py' 2020-02-13T08:58:35,606 adding 'starfish/core/codebook/test/test_normalize_code_traces.py' 2020-02-13T08:58:35,608 adding 'starfish/core/codebook/test/test_per_round_max_decode.py' 2020-02-13T08:58:35,610 adding 'starfish/core/codebook/test/test_synthetic_one_hot_codebook.py' 2020-02-13T08:58:35,613 adding 'starfish/core/codebook/test/test_to_json.py' 2020-02-13T08:58:35,616 adding 'starfish/core/config/__init__.py' 2020-02-13T08:58:35,619 adding 'starfish/core/config/test/__init__.py' 2020-02-13T08:58:35,622 adding 'starfish/core/config/test/test_config.py' 2020-02-13T08:58:35,625 adding 'starfish/core/experiment/__init__.py' 2020-02-13T08:58:35,629 adding 'starfish/core/experiment/experiment.py' 2020-02-13T08:58:35,631 adding 'starfish/core/experiment/version.py' 2020-02-13T08:58:35,634 adding 'starfish/core/experiment/builder/__init__.py' 2020-02-13T08:58:35,638 adding 'starfish/core/experiment/builder/builder.py' 2020-02-13T08:58:35,640 adding 'starfish/core/experiment/builder/defaultproviders.py' 2020-02-13T08:58:35,643 adding 'starfish/core/experiment/builder/inplace.py' 2020-02-13T08:58:35,645 adding 'starfish/core/experiment/builder/orderediterator.py' 2020-02-13T08:58:35,647 adding 'starfish/core/experiment/builder/providers.py' 2020-02-13T08:58:35,650 adding 'starfish/core/experiment/builder/structured_formatter.py' 2020-02-13T08:58:35,653 adding 'starfish/core/experiment/builder/test/__init__.py' 2020-02-13T08:58:35,656 adding 'starfish/core/experiment/builder/test/test_inplace.py' 2020-02-13T08:58:35,658 adding 'starfish/core/experiment/builder/test/test_orderediterator.py' 2020-02-13T08:58:35,660 adding 'starfish/core/experiment/builder/test/test_small_axis.py' 2020-02-13T08:58:35,663 adding 'starfish/core/experiment/builder/test/factories/__init__.py' 2020-02-13T08:58:35,666 adding 'starfish/core/experiment/builder/test/factories/all_purpose.py' 2020-02-13T08:58:35,668 adding 'starfish/core/experiment/builder/test/factories/unique_tiles.py' 2020-02-13T08:58:35,671 adding 'starfish/core/experiment/builder/test/structured_formatter/__init__.py' 2020-02-13T08:58:35,674 adding 'starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py' 2020-02-13T08:58:35,677 adding 'starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py' 2020-02-13T08:58:35,679 adding 'starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py' 2020-02-13T08:58:35,682 adding 'starfish/core/experiment/builder/test/structured_formatter/util.py' 2020-02-13T08:58:35,685 adding 'starfish/core/experiment/test/__init__.py' 2020-02-13T08:58:35,687 adding 'starfish/core/experiment/test/test_experiment.py' 2020-02-13T08:58:35,689 adding 'starfish/core/experiment/test/test_version.py' 2020-02-13T08:58:35,692 adding 'starfish/core/expression_matrix/__init__.py' 2020-02-13T08:58:35,694 adding 'starfish/core/expression_matrix/concatenate.py' 2020-02-13T08:58:35,697 adding 'starfish/core/expression_matrix/expression_matrix.py' 2020-02-13T08:58:35,700 adding 'starfish/core/expression_matrix/test/__init__.py' 2020-02-13T08:58:35,702 adding 'starfish/core/expression_matrix/test/test_concatenate.py' 2020-02-13T08:58:35,704 adding 'starfish/core/expression_matrix/test/test_serialization.py' 2020-02-13T08:58:35,707 adding 'starfish/core/image/__init__.py' 2020-02-13T08:58:35,711 adding 'starfish/core/image/Filter/__init__.py' 2020-02-13T08:58:35,713 adding 'starfish/core/image/Filter/_base.py' 2020-02-13T08:58:35,716 adding 'starfish/core/image/Filter/bandpass.py' 2020-02-13T08:58:35,718 adding 'starfish/core/image/Filter/call_bases.py' 2020-02-13T08:58:35,721 adding 'starfish/core/image/Filter/clip.py' 2020-02-13T08:58:35,724 adding 'starfish/core/image/Filter/clip_percentile_to_zero.py' 2020-02-13T08:58:35,726 adding 'starfish/core/image/Filter/clip_value_to_zero.py' 2020-02-13T08:58:35,729 adding 'starfish/core/image/Filter/element_wise_mult.py' 2020-02-13T08:58:35,731 adding 'starfish/core/image/Filter/gaussian_high_pass.py' 2020-02-13T08:58:35,734 adding 'starfish/core/image/Filter/gaussian_low_pass.py' 2020-02-13T08:58:35,736 adding 'starfish/core/image/Filter/ilastik_pre_trained_probability.py' 2020-02-13T08:58:35,739 adding 'starfish/core/image/Filter/laplace.py' 2020-02-13T08:58:35,742 adding 'starfish/core/image/Filter/linear_unmixing.py' 2020-02-13T08:58:35,745 adding 'starfish/core/image/Filter/map.py' 2020-02-13T08:58:35,747 adding 'starfish/core/image/Filter/match_histograms.py' 2020-02-13T08:58:35,750 adding 'starfish/core/image/Filter/mean_high_pass.py' 2020-02-13T08:58:35,753 adding 'starfish/core/image/Filter/reduce.py' 2020-02-13T08:58:35,756 adding 'starfish/core/image/Filter/richardson_lucy_deconvolution.py' 2020-02-13T08:58:35,758 adding 'starfish/core/image/Filter/util.py' 2020-02-13T08:58:35,761 adding 'starfish/core/image/Filter/white_tophat.py' 2020-02-13T08:58:35,763 adding 'starfish/core/image/Filter/zero_by_channel_magnitude.py' 2020-02-13T08:58:35,767 adding 'starfish/core/image/Filter/test/__init__.py' 2020-02-13T08:58:35,769 adding 'starfish/core/image/Filter/test/test_api_contract.py' 2020-02-13T08:58:35,772 adding 'starfish/core/image/Filter/test/test_call_bases.py' 2020-02-13T08:58:35,774 adding 'starfish/core/image/Filter/test/test_filter.py' 2020-02-13T08:58:35,776 adding 'starfish/core/image/Filter/test/test_histogram_matching.py' 2020-02-13T08:58:35,778 adding 'starfish/core/image/Filter/test/test_linear_unmixing.py' 2020-02-13T08:58:35,781 adding 'starfish/core/image/Filter/test/test_map.py' 2020-02-13T08:58:35,783 adding 'starfish/core/image/Filter/test/test_reduce.py' 2020-02-13T08:58:35,786 adding 'starfish/core/image/Filter/test/test_white_tophat.py' 2020-02-13T08:58:35,788 adding 'starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py' 2020-02-13T08:58:35,791 adding 'starfish/core/image/Segment/__init__.py' 2020-02-13T08:58:35,793 adding 'starfish/core/image/Segment/_base.py' 2020-02-13T08:58:35,796 adding 'starfish/core/image/Segment/watershed.py' 2020-02-13T08:58:35,800 adding 'starfish/core/image/_registration/__init__.py' 2020-02-13T08:58:35,802 adding 'starfish/core/image/_registration/_format.py' 2020-02-13T08:58:35,805 adding 'starfish/core/image/_registration/transforms_list.py' 2020-02-13T08:58:35,808 adding 'starfish/core/image/_registration/ApplyTransform/__init__.py' 2020-02-13T08:58:35,810 adding 'starfish/core/image/_registration/ApplyTransform/_base.py' 2020-02-13T08:58:35,813 adding 'starfish/core/image/_registration/ApplyTransform/warp.py' 2020-02-13T08:58:35,816 adding 'starfish/core/image/_registration/ApplyTransform/test/__init__.py' 2020-02-13T08:58:35,818 adding 'starfish/core/image/_registration/ApplyTransform/test/test_warp.py' 2020-02-13T08:58:35,821 adding 'starfish/core/image/_registration/LearnTransform/__init__.py' 2020-02-13T08:58:35,824 adding 'starfish/core/image/_registration/LearnTransform/_base.py' 2020-02-13T08:58:35,826 adding 'starfish/core/image/_registration/LearnTransform/translation.py' 2020-02-13T08:58:35,829 adding 'starfish/core/image/_registration/LearnTransform/test/__init__.py' 2020-02-13T08:58:35,831 adding 'starfish/core/image/_registration/LearnTransform/test/test_translation.py' 2020-02-13T08:58:35,834 adding 'starfish/core/image/_registration/test/__init__.py' 2020-02-13T08:58:35,837 adding 'starfish/core/image/_registration/test/test_transforms_list.py' 2020-02-13T08:58:35,840 adding 'starfish/core/imagestack/__init__.py' 2020-02-13T08:58:35,842 adding 'starfish/core/imagestack/dataorder.py' 2020-02-13T08:58:35,851 adding 'starfish/core/imagestack/imagestack.py' 2020-02-13T08:58:35,854 adding 'starfish/core/imagestack/indexing_utils.py' 2020-02-13T08:58:35,856 adding 'starfish/core/imagestack/physical_coordinates.py' 2020-02-13T08:58:35,859 adding 'starfish/core/imagestack/parser/__init__.py' 2020-02-13T08:58:35,862 adding 'starfish/core/imagestack/parser/_key.py' 2020-02-13T08:58:35,864 adding 'starfish/core/imagestack/parser/_tiledata.py' 2020-02-13T08:58:35,867 adding 'starfish/core/imagestack/parser/crop.py' 2020-02-13T08:58:35,871 adding 'starfish/core/imagestack/parser/numpy/__init__.py' 2020-02-13T08:58:35,874 adding 'starfish/core/imagestack/parser/tilefetcher/__init__.py' 2020-02-13T08:58:35,876 adding 'starfish/core/imagestack/parser/tilefetcher/_parser.py' 2020-02-13T08:58:35,879 adding 'starfish/core/imagestack/parser/tileset/__init__.py' 2020-02-13T08:58:35,882 adding 'starfish/core/imagestack/parser/tileset/_parser.py' 2020-02-13T08:58:35,885 adding 'starfish/core/imagestack/test/__init__.py' 2020-02-13T08:58:35,888 adding 'starfish/core/imagestack/test/imagestack_test_utils.py' 2020-02-13T08:58:35,890 adding 'starfish/core/imagestack/test/test_apply.py' 2020-02-13T08:58:35,893 adding 'starfish/core/imagestack/test/test_coordinates.py' 2020-02-13T08:58:35,895 adding 'starfish/core/imagestack/test/test_cropped_load.py' 2020-02-13T08:58:35,899 adding 'starfish/core/imagestack/test/test_export.py' 2020-02-13T08:58:35,901 adding 'starfish/core/imagestack/test/test_from_numpy_array.py' 2020-02-13T08:58:35,903 adding 'starfish/core/imagestack/test/test_from_tilefetcher.py' 2020-02-13T08:58:35,906 adding 'starfish/core/imagestack/test/test_index.py' 2020-02-13T08:58:35,909 adding 'starfish/core/imagestack/test/test_labeled_indices.py' 2020-02-13T08:58:35,911 adding 'starfish/core/imagestack/test/test_max_proj.py' 2020-02-13T08:58:35,914 adding 'starfish/core/imagestack/test/test_metadata.py' 2020-02-13T08:58:35,916 adding 'starfish/core/imagestack/test/test_physical_coordinate_calculator.py' 2020-02-13T08:58:35,918 adding 'starfish/core/imagestack/test/test_slice_ops.py' 2020-02-13T08:58:35,921 adding 'starfish/core/imagestack/test/test_slicedimage_dtype.py' 2020-02-13T08:58:35,924 adding 'starfish/core/imagestack/test/factories/__init__.py' 2020-02-13T08:58:35,926 adding 'starfish/core/imagestack/test/factories/all_purpose.py' 2020-02-13T08:58:35,929 adding 'starfish/core/imagestack/test/factories/from_codebook.py' 2020-02-13T08:58:35,931 adding 'starfish/core/imagestack/test/factories/synthetic_stack.py' 2020-02-13T08:58:35,933 adding 'starfish/core/imagestack/test/factories/unique_tiles.py' 2020-02-13T08:58:35,935 adding 'starfish/core/imagestack/test/factories/with_coords.py' 2020-02-13T08:58:35,938 adding 'starfish/core/intensity_table/__init__.py' 2020-02-13T08:58:35,940 adding 'starfish/core/intensity_table/concatenate.py' 2020-02-13T08:58:35,943 adding 'starfish/core/intensity_table/decoded_intensity_table.py' 2020-02-13T08:58:35,947 adding 'starfish/core/intensity_table/intensity_table.py' 2020-02-13T08:58:35,949 adding 'starfish/core/intensity_table/intensity_table_coordinates.py' 2020-02-13T08:58:35,952 adding 'starfish/core/intensity_table/overlap.py' 2020-02-13T08:58:35,955 adding 'starfish/core/intensity_table/test/__init__.py' 2020-02-13T08:58:35,958 adding 'starfish/core/intensity_table/test/factories.py' 2020-02-13T08:58:35,960 adding 'starfish/core/intensity_table/test/test_concatenate.py' 2020-02-13T08:58:35,962 adding 'starfish/core/intensity_table/test/test_empty_intensity_table.py' 2020-02-13T08:58:35,965 adding 'starfish/core/intensity_table/test/test_from_imagestack.py' 2020-02-13T08:58:35,967 adding 'starfish/core/intensity_table/test/test_from_spot_data.py' 2020-02-13T08:58:35,969 adding 'starfish/core/intensity_table/test/test_intensity_table_coords.py' 2020-02-13T08:58:35,971 adding 'starfish/core/intensity_table/test/test_intensity_table_serialization.py' 2020-02-13T08:58:35,974 adding 'starfish/core/intensity_table/test/test_overlap.py' 2020-02-13T08:58:35,976 adding 'starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py' 2020-02-13T08:58:35,979 adding 'starfish/core/intensity_table/test/test_synthetic_intensities.py' 2020-02-13T08:58:35,981 adding 'starfish/core/intensity_table/test/test_to_mermaid.py' 2020-02-13T08:58:35,984 adding 'starfish/core/morphology/__init__.py' 2020-02-13T08:58:35,986 adding 'starfish/core/morphology/util.py' 2020-02-13T08:58:35,989 adding 'starfish/core/morphology/Binarize/__init__.py' 2020-02-13T08:58:35,991 adding 'starfish/core/morphology/Binarize/_base.py' 2020-02-13T08:58:35,994 adding 'starfish/core/morphology/Binarize/threshold.py' 2020-02-13T08:58:35,997 adding 'starfish/core/morphology/Binarize/test/__init__.py' 2020-02-13T08:58:35,999 adding 'starfish/core/morphology/Binarize/test/test_threshold.py' 2020-02-13T08:58:36,002 adding 'starfish/core/morphology/Filter/__init__.py' 2020-02-13T08:58:36,004 adding 'starfish/core/morphology/Filter/_base.py' 2020-02-13T08:58:36,006 adding 'starfish/core/morphology/Filter/areafilter.py' 2020-02-13T08:58:36,008 adding 'starfish/core/morphology/Filter/map.py' 2020-02-13T08:58:36,011 adding 'starfish/core/morphology/Filter/min_distance_label.py' 2020-02-13T08:58:36,013 adding 'starfish/core/morphology/Filter/reduce.py' 2020-02-13T08:58:36,015 adding 'starfish/core/morphology/Filter/structural_label.py' 2020-02-13T08:58:36,018 adding 'starfish/core/morphology/Filter/test/__init__.py' 2020-02-13T08:58:36,020 adding 'starfish/core/morphology/Filter/test/test_areafilter.py' 2020-02-13T08:58:36,023 adding 'starfish/core/morphology/Filter/test/test_map.py' 2020-02-13T08:58:36,025 adding 'starfish/core/morphology/Filter/test/test_reduce.py' 2020-02-13T08:58:36,028 adding 'starfish/core/morphology/Merge/__init__.py' 2020-02-13T08:58:36,030 adding 'starfish/core/morphology/Merge/_base.py' 2020-02-13T08:58:36,032 adding 'starfish/core/morphology/Merge/simple.py' 2020-02-13T08:58:36,035 adding 'starfish/core/morphology/Merge/test/__init__.py' 2020-02-13T08:58:36,037 adding 'starfish/core/morphology/Merge/test/test_simple.py' 2020-02-13T08:58:36,040 adding 'starfish/core/morphology/Segment/__init__.py' 2020-02-13T08:58:36,042 adding 'starfish/core/morphology/Segment/_base.py' 2020-02-13T08:58:36,045 adding 'starfish/core/morphology/Segment/watershed.py' 2020-02-13T08:58:36,048 adding 'starfish/core/morphology/binary_mask/__init__.py' 2020-02-13T08:58:36,050 adding 'starfish/core/morphology/binary_mask/_io.py' 2020-02-13T08:58:36,056 adding 'starfish/core/morphology/binary_mask/binary_mask.py' 2020-02-13T08:58:36,058 adding 'starfish/core/morphology/binary_mask/expand.py' 2020-02-13T08:58:36,061 adding 'starfish/core/morphology/binary_mask/test/__init__.py' 2020-02-13T08:58:36,063 adding 'starfish/core/morphology/binary_mask/test/factories.py' 2020-02-13T08:58:36,066 adding 'starfish/core/morphology/binary_mask/test/test_binary_mask.py' 2020-02-13T08:58:36,068 adding 'starfish/core/morphology/binary_mask/test/test_expand.py' 2020-02-13T08:58:36,071 adding 'starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py' 2020-02-13T08:58:36,073 adding 'starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py' 2020-02-13T08:58:36,077 adding 'starfish/core/morphology/label_image/__init__.py' 2020-02-13T08:58:36,079 adding 'starfish/core/morphology/label_image/label_image.py' 2020-02-13T08:58:36,082 adding 'starfish/core/morphology/label_image/test/__init__.py' 2020-02-13T08:58:36,085 adding 'starfish/core/morphology/label_image/test/test_label_image.py' 2020-02-13T08:58:36,088 adding 'starfish/core/pipeline/__init__.py' 2020-02-13T08:58:36,090 adding 'starfish/core/pipeline/algorithmbase.py' 2020-02-13T08:58:36,093 adding 'starfish/core/segmentation_mask/__init__.py' 2020-02-13T08:58:36,095 adding 'starfish/core/segmentation_mask/segmentation_mask.py' 2020-02-13T08:58:36,098 adding 'starfish/core/spacetx_format/__init__.py' 2020-02-13T08:58:36,101 adding 'starfish/core/spacetx_format/cli.py' 2020-02-13T08:58:36,103 adding 'starfish/core/spacetx_format/test_codebook.py' 2020-02-13T08:58:36,105 adding 'starfish/core/spacetx_format/test_coordinates.py' 2020-02-13T08:58:36,107 adding 'starfish/core/spacetx_format/test_experiment.py' 2020-02-13T08:58:36,109 adding 'starfish/core/spacetx_format/test_field_of_view.py' 2020-02-13T08:58:36,112 adding 'starfish/core/spacetx_format/test_fov_manifest.py' 2020-02-13T08:58:36,114 adding 'starfish/core/spacetx_format/test_fuzz.py' 2020-02-13T08:58:36,118 adding 'starfish/core/spacetx_format/util.py' 2020-02-13T08:58:36,120 adding 'starfish/core/spacetx_format/validate_sptx.py' 2020-02-13T08:58:36,123 adding 'starfish/core/spots/__init__.py' 2020-02-13T08:58:36,126 adding 'starfish/core/spots/AssignTargets/__init__.py' 2020-02-13T08:58:36,128 adding 'starfish/core/spots/AssignTargets/_base.py' 2020-02-13T08:58:36,131 adding 'starfish/core/spots/AssignTargets/label.py' 2020-02-13T08:58:36,134 adding 'starfish/core/spots/DecodeSpots/__init__.py' 2020-02-13T08:58:36,136 adding 'starfish/core/spots/DecodeSpots/_base.py' 2020-02-13T08:58:36,139 adding 'starfish/core/spots/DecodeSpots/metric_decoder.py' 2020-02-13T08:58:36,141 adding 'starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py' 2020-02-13T08:58:36,143 adding 'starfish/core/spots/DecodeSpots/simple_lookup_decoder.py' 2020-02-13T08:58:36,146 adding 'starfish/core/spots/DecodeSpots/trace_builders.py' 2020-02-13T08:58:36,148 adding 'starfish/core/spots/DecodeSpots/util.py' 2020-02-13T08:58:36,151 adding 'starfish/core/spots/DecodeSpots/test/__init__.py' 2020-02-13T08:58:36,154 adding 'starfish/core/spots/DecodeSpots/test/test_composite_codebook.py' 2020-02-13T08:58:36,157 adding 'starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py' 2020-02-13T08:58:36,159 adding 'starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py' 2020-02-13T08:58:36,162 adding 'starfish/core/spots/DecodeSpots/test/test_trace_builders.py' 2020-02-13T08:58:36,165 adding 'starfish/core/spots/DetectPixels/__init__.py' 2020-02-13T08:58:36,167 adding 'starfish/core/spots/DetectPixels/_base.py' 2020-02-13T08:58:36,171 adding 'starfish/core/spots/DetectPixels/combine_adjacent_features.py' 2020-02-13T08:58:36,174 adding 'starfish/core/spots/DetectPixels/pixel_spot_decoder.py' 2020-02-13T08:58:36,177 adding 'starfish/core/spots/DetectPixels/test/__init__.py' 2020-02-13T08:58:36,179 adding 'starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py' 2020-02-13T08:58:36,181 adding 'starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py' 2020-02-13T08:58:36,183 adding 'starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py' 2020-02-13T08:58:36,185 adding 'starfish/core/spots/DetectPixels/test/test_targets_map.py' 2020-02-13T08:58:36,189 adding 'starfish/core/spots/FindSpots/__init__.py' 2020-02-13T08:58:36,191 adding 'starfish/core/spots/FindSpots/_base.py' 2020-02-13T08:58:36,194 adding 'starfish/core/spots/FindSpots/blob.py' 2020-02-13T08:58:36,198 adding 'starfish/core/spots/FindSpots/local_max_peak_finder.py' 2020-02-13T08:58:36,200 adding 'starfish/core/spots/FindSpots/spot_finding_utils.py' 2020-02-13T08:58:36,203 adding 'starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py' 2020-02-13T08:58:36,206 adding 'starfish/core/spots/FindSpots/test/__init__.py' 2020-02-13T08:58:36,209 adding 'starfish/core/spots/FindSpots/test/test_spot_detection.py' 2020-02-13T08:58:36,211 adding 'starfish/core/spots/FindSpots/test/test_synthetic_data.py' 2020-02-13T08:58:36,214 adding 'starfish/core/test/__init__.py' 2020-02-13T08:58:36,218 adding 'starfish/core/test/factories.py' 2020-02-13T08:58:36,220 adding 'starfish/core/test/test_display.py' 2020-02-13T08:58:36,223 adding 'starfish/core/test/test_multiprocessing_workflow.py' 2020-02-13T08:58:36,225 adding 'starfish/core/test/test_synthetic_spot_creation.py' 2020-02-13T08:58:36,229 adding 'starfish/core/types/__init__.py' 2020-02-13T08:58:36,231 adding 'starfish/core/types/_constants.py' 2020-02-13T08:58:36,233 adding 'starfish/core/types/_decoded_spots.py' 2020-02-13T08:58:36,236 adding 'starfish/core/types/_functionsource.py' 2020-02-13T08:58:36,238 adding 'starfish/core/types/_spot_attributes.py' 2020-02-13T08:58:36,241 adding 'starfish/core/types/_spot_finding_results.py' 2020-02-13T08:58:36,243 adding 'starfish/core/types/_validated_table.py' 2020-02-13T08:58:36,246 adding 'starfish/core/types/test/__init__.py' 2020-02-13T08:58:36,248 adding 'starfish/core/types/test/test_decoded_spots.py' 2020-02-13T08:58:36,251 adding 'starfish/core/util/__init__.py' 2020-02-13T08:58:36,253 adding 'starfish/core/util/argparse.py' 2020-02-13T08:58:36,255 adding 'starfish/core/util/clock.py' 2020-02-13T08:58:36,258 adding 'starfish/core/util/config.py' 2020-02-13T08:58:36,260 adding 'starfish/core/util/enum.py' 2020-02-13T08:58:36,262 adding 'starfish/core/util/exec.py' 2020-02-13T08:58:36,265 adding 'starfish/core/util/levels.py' 2020-02-13T08:58:36,267 adding 'starfish/core/util/logging.py' 2020-02-13T08:58:36,269 adding 'starfish/core/util/try_import.py' 2020-02-13T08:58:36,273 adding 'starfish/core/util/click/__init__.py' 2020-02-13T08:58:36,276 adding 'starfish/core/util/test/__init__.py' 2020-02-13T08:58:36,278 adding 'starfish/core/util/test/test_levels.py' 2020-02-13T08:58:36,280 adding 'starfish/core/util/test/test_preserve_float_range.py' 2020-02-13T08:58:36,283 adding 'starfish/experiment/__init__.py' 2020-02-13T08:58:36,285 adding 'starfish/experiment/builder.py' 2020-02-13T08:58:36,290 adding 'starfish/spacetx_format/examples/codebook/codebook.json' 2020-02-13T08:58:36,292 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal.json' 2020-02-13T08:58:36,294 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json' 2020-02-13T08:58:36,297 adding 'starfish/spacetx_format/examples/experiment/dartfish_experiment.json' 2020-02-13T08:58:36,299 adding 'starfish/spacetx_format/examples/experiment/experiment.json' 2020-02-13T08:58:36,301 adding 'starfish/spacetx_format/examples/experiment/no_fov_manifest.json' 2020-02-13T08:58:36,304 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json' 2020-02-13T08:58:36,306 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json' 2020-02-13T08:58:36,308 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json' 2020-02-13T08:58:36,310 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json' 2020-02-13T08:58:36,312 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json' 2020-02-13T08:58:36,314 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json' 2020-02-13T08:58:36,316 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json' 2020-02-13T08:58:36,318 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json' 2020-02-13T08:58:36,321 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json' 2020-02-13T08:58:36,323 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json' 2020-02-13T08:58:36,325 adding 'starfish/spacetx_format/examples/field_of_view/field_of_view.json' 2020-02-13T08:58:36,327 adding 'starfish/spacetx_format/examples/field_of_view/too_large.json' 2020-02-13T08:58:36,330 adding 'starfish/spacetx_format/examples/fov_manifest/fov_manifest.json' 2020-02-13T08:58:36,333 adding 'starfish/spacetx_format/schema/experiment_4.0.0.json' 2020-02-13T08:58:36,336 adding 'starfish/spacetx_format/schema/experiment_5.0.0.json' 2020-02-13T08:58:36,338 adding 'starfish/spacetx_format/schema/extras.json' 2020-02-13T08:58:36,340 adding 'starfish/spacetx_format/schema/fov_manifest_0.0.0.json' 2020-02-13T08:58:36,342 adding 'starfish/spacetx_format/schema/fov_manifest_0.1.0.json' 2020-02-13T08:58:36,344 adding 'starfish/spacetx_format/schema/version.json' 2020-02-13T08:58:36,348 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codebook.json' 2020-02-13T08:58:36,350 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codeword.json' 2020-02-13T08:58:36,354 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json' 2020-02-13T08:58:36,358 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json' 2020-02-13T08:58:36,360 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json' 2020-02-13T08:58:36,363 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json' 2020-02-13T08:58:36,367 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json' 2020-02-13T08:58:36,371 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json' 2020-02-13T08:58:36,373 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json' 2020-02-13T08:58:36,376 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json' 2020-02-13T08:58:36,380 adding 'starfish/test/__init__.py' 2020-02-13T08:58:36,384 adding 'starfish/test/full_pipelines/__init__.py' 2020-02-13T08:58:36,387 adding 'starfish/test/full_pipelines/api/__init__.py' 2020-02-13T08:58:36,389 adding 'starfish/test/full_pipelines/api/test_allen_smFISH.py' 2020-02-13T08:58:36,392 adding 'starfish/test/full_pipelines/api/test_dartfish.py' 2020-02-13T08:58:36,395 adding 'starfish/test/full_pipelines/api/test_iss_api.py' 2020-02-13T08:58:36,397 adding 'starfish/test/full_pipelines/api/test_iss_doc_pipeline.py' 2020-02-13T08:58:36,401 adding 'starfish/test/full_pipelines/api/test_merfish.py' 2020-02-13T08:58:36,404 adding 'starfish/util/__init__.py' 2020-02-13T08:58:36,406 adding 'starfish/util/plot.py' 2020-02-13T08:58:36,410 adding 'starfish-0.2.0.dist-info/METADATA' 2020-02-13T08:58:36,412 adding 'starfish-0.2.0.dist-info/WHEEL' 2020-02-13T08:58:36,414 adding 'starfish-0.2.0.dist-info/entry_points.txt' 2020-02-13T08:58:36,415 adding 'starfish-0.2.0.dist-info/top_level.txt' 2020-02-13T08:58:36,422 adding 'starfish-0.2.0.dist-info/RECORD' 2020-02-13T08:58:36,445 removing build/bdist.linux-armv7l/wheel 2020-02-13T08:58:36,833 Building wheel for starfish (setup.py): finished with status 'done' 2020-02-13T08:58:36,862 Created wheel for starfish: filename=starfish-0.2.0-py3-none-any.whl size=363379 sha256=ca06862a964eb8cd388b04579fade6fd2d3b4023ad920d3b805757741255c429 2020-02-13T08:58:36,863 Stored in directory: /tmp/pip-ephem-wheel-cache-hrnhvzl5/wheels/9c/1c/33/3d5b0ce237bb4c0e4b26b7362e1b651c3bb00af015537f6904 2020-02-13T08:58:36,869 Successfully built starfish 2020-02-13T08:58:36,910 Cleaning up... 2020-02-13T08:58:36,911 Removing source in /tmp/pip-wheel-gesq005p/starfish 2020-02-13T08:58:37,372 Removed build tracker: '/tmp/pip-req-tracker-kjb6sm9h'