2020-02-13T19:49:59,674 Created temporary directory: /tmp/pip-ephem-wheel-cache-18col2j8
2020-02-13T19:49:59,677 Created temporary directory: /tmp/pip-req-tracker-qmmf6kv8
2020-02-13T19:49:59,678 Initialized build tracking at /tmp/pip-req-tracker-qmmf6kv8
2020-02-13T19:49:59,678 Created build tracker: /tmp/pip-req-tracker-qmmf6kv8
2020-02-13T19:49:59,679 Entered build tracker: /tmp/pip-req-tracker-qmmf6kv8
2020-02-13T19:49:59,680 Created temporary directory: /tmp/pip-wheel-z3tbyxl5
2020-02-13T19:49:59,685 1 location(s) to search for versions of py-popgen:
2020-02-13T19:49:59,685 * https://pypi.org/simple/py-popgen/
2020-02-13T19:49:59,685 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2020-02-13T19:49:59,686 Getting page https://pypi.org/simple/py-popgen/
2020-02-13T19:49:59,688 Found index url https://pypi.org/simple
2020-02-13T19:49:59,690 Getting credentials from keyring for https://pypi.org/simple
2020-02-13T19:49:59,691 Getting credentials from keyring for pypi.org
2020-02-13T19:49:59,964   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz#sha256=c95c719e8e1536b59b32fd617118d8374e8b4438ec114d1fc48704ccf9ccaf9a (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2020-02-13T19:49:59,965   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz#sha256=150557350080571d2db292b647478c80bfe7bfd81a3750db368276e613fae36d (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2020-02-13T19:49:59,967   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2020-02-13T19:49:59,969   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2020-02-13T19:49:59,972   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz#sha256=29493332c6131f297c20575b30e7a15ee2782dd517cb6bd7c3e25bd06f38e37e (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2020-02-13T19:49:59,974   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2020-02-13T19:49:59,976   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz#sha256=3d18d3360fdc4296a01f3c530757723b4ffe97bed9776e54f643b480e9439bcc (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2020-02-13T19:49:59,978   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2020-02-13T19:49:59,980   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz#sha256=c6a4cb6f8f2064a6188888dc2e1804c9abdb338f23a23c057cdcf9ca2e410867 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2020-02-13T19:49:59,989 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2020-02-13T19:49:59,990 Using version 0.1.7 (newest of versions: 0.1.7)
2020-02-13T19:49:59,995 Collecting py-popgen==0.1.7
2020-02-13T19:49:59,998   Created temporary directory: /tmp/pip-unpack-wyll8d53
2020-02-13T19:50:00,000   Getting credentials from keyring for files.pythonhosted.org
2020-02-13T19:50:04,836   Downloading py-popgen-0.1.7.tar.gz (26.9 MB)
2020-02-13T19:50:14,724   Added py-popgen==0.1.7 from https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz#sha256=c6a4cb6f8f2064a6188888dc2e1804c9abdb338f23a23c057cdcf9ca2e410867 to build tracker '/tmp/pip-req-tracker-qmmf6kv8'
2020-02-13T19:50:14,726     Running setup.py (path:/tmp/pip-wheel-z3tbyxl5/py-popgen/setup.py) egg_info for package py-popgen
2020-02-13T19:50:14,728     Running command python setup.py egg_info
2020-02-13T19:50:16,281     running egg_info
2020-02-13T19:50:16,286     creating /tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info
2020-02-13T19:50:16,288     writing /tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/PKG-INFO
2020-02-13T19:50:16,291     writing dependency_links to /tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/dependency_links.txt
2020-02-13T19:50:16,295     writing requirements to /tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/requires.txt
2020-02-13T19:50:16,296     writing top-level names to /tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/top_level.txt
2020-02-13T19:50:16,299     writing manifest file '/tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-02-13T19:50:16,547     reading manifest file '/tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-02-13T19:50:16,550     reading manifest template 'MANIFEST.in'
2020-02-13T19:50:16,577     writing manifest file '/tmp/pip-wheel-z3tbyxl5/py-popgen/pip-egg-info/py_popgen.egg-info/SOURCES.txt'
2020-02-13T19:50:16,686   Source in /tmp/pip-wheel-z3tbyxl5/py-popgen has version 0.1.7, which satisfies requirement py-popgen==0.1.7 from https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz#sha256=c6a4cb6f8f2064a6188888dc2e1804c9abdb338f23a23c057cdcf9ca2e410867
2020-02-13T19:50:16,688   Removed py-popgen==0.1.7 from https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz#sha256=c6a4cb6f8f2064a6188888dc2e1804c9abdb338f23a23c057cdcf9ca2e410867 from build tracker '/tmp/pip-req-tracker-qmmf6kv8'
2020-02-13T19:50:16,693 Building wheels for collected packages: py-popgen
2020-02-13T19:50:16,700   Created temporary directory: /tmp/pip-wheel-q3twln5z
2020-02-13T19:50:16,700   Building wheel for py-popgen (setup.py): started
2020-02-13T19:50:16,701   Destination directory: /tmp/pip-wheel-q3twln5z
2020-02-13T19:50:16,701   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-z3tbyxl5/py-popgen/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-z3tbyxl5/py-popgen/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-q3twln5z
2020-02-13T19:50:18,263   running bdist_wheel
2020-02-13T19:50:18,274   running build
2020-02-13T19:50:18,275   running build_py
2020-02-13T19:50:18,516   creating build
2020-02-13T19:50:18,517   creating build/lib
2020-02-13T19:50:18,537   creating build/lib/pgpipe
2020-02-13T19:50:18,539   copying pgpipe/model.py -> build/lib/pgpipe
2020-02-13T19:50:18,544   copying pgpipe/vcf_utilities.py -> build/lib/pgpipe
2020-02-13T19:50:18,550   copying pgpipe/extend_loci.py -> build/lib/pgpipe
2020-02-13T19:50:18,555   copying pgpipe/vcf_calc.py -> build/lib/pgpipe
2020-02-13T19:50:18,561   copying pgpipe/stat_sampler.py -> build/lib/pgpipe
2020-02-13T19:50:18,566   copying pgpipe/genome_region.py -> build/lib/pgpipe
2020-02-13T19:50:18,570   copying pgpipe/subtract_bed.py -> build/lib/pgpipe
2020-02-13T19:50:18,573   copying pgpipe/vcftools.py -> build/lib/pgpipe
2020-02-13T19:50:18,577   copying pgpipe/logging_module.py -> build/lib/pgpipe
2020-02-13T19:50:18,580   copying pgpipe/beagle.py -> build/lib/pgpipe
2020-02-13T19:50:18,585   copying pgpipe/shapeit.py -> build/lib/pgpipe
2020-02-13T19:50:18,590   copying pgpipe/ima3_wrapper.py -> build/lib/pgpipe
2020-02-13T19:50:18,595   copying pgpipe/vcf_liftover.py -> build/lib/pgpipe
2020-02-13T19:50:18,601   copying pgpipe/vcf_split.py -> build/lib/pgpipe
2020-02-13T19:50:18,606   copying pgpipe/fasta_utilities.py -> build/lib/pgpipe
2020-02-13T19:50:18,609   copying pgpipe/vcf_to_ima.py -> build/lib/pgpipe
2020-02-13T19:50:18,613   copying pgpipe/vcf_sampler.py -> build/lib/pgpipe
2020-02-13T19:50:18,617   copying pgpipe/vcf_filter.py -> build/lib/pgpipe
2020-02-13T19:50:18,622   copying pgpipe/plink_ld.py -> build/lib/pgpipe
2020-02-13T19:50:18,627   copying pgpipe/model_creator.py -> build/lib/pgpipe
2020-02-13T19:50:18,630   copying pgpipe/min_pop_filter.py -> build/lib/pgpipe
2020-02-13T19:50:18,633   copying pgpipe/convert.py -> build/lib/pgpipe
2020-02-13T19:50:18,637   copying pgpipe/argparse_sets.py -> build/lib/pgpipe
2020-02-13T19:50:18,640   copying pgpipe/bed_invert.py -> build/lib/pgpipe
2020-02-13T19:50:18,643   copying pgpipe/model_sampler.py -> build/lib/pgpipe
2020-02-13T19:50:18,647   copying pgpipe/graph_plotter.py -> build/lib/pgpipe
2020-02-13T19:50:18,651   copying pgpipe/vcf_split_pysam.py -> build/lib/pgpipe
2020-02-13T19:50:18,655   copying pgpipe/bcftools.py -> build/lib/pgpipe
2020-02-13T19:50:18,659   copying pgpipe/vcf_ref_to_seq.py -> build/lib/pgpipe
2020-02-13T19:50:18,663   copying pgpipe/get_nonmissing_chunks.py -> build/lib/pgpipe
2020-02-13T19:50:18,668   copying pgpipe/misc.py -> build/lib/pgpipe
2020-02-13T19:50:18,673   copying pgpipe/ima_priors.py -> build/lib/pgpipe
2020-02-13T19:50:18,677   copying pgpipe/vcf_to_treemix.py -> build/lib/pgpipe
2020-02-13T19:50:18,682   copying pgpipe/admixtools.py -> build/lib/pgpipe
2020-02-13T19:50:18,687   copying pgpipe/admixture.py -> build/lib/pgpipe
2020-02-13T19:50:18,691   copying pgpipe/fasta.py -> build/lib/pgpipe
2020-02-13T19:50:18,694   copying pgpipe/four_gamete.py -> build/lib/pgpipe
2020-02-13T19:50:18,699   copying pgpipe/vcf_reader_func.py -> build/lib/pgpipe
2020-02-13T19:50:18,703   copying pgpipe/ima_to_treemix.py -> build/lib/pgpipe
2020-02-13T19:50:18,706   copying pgpipe/parse_functions.py -> build/lib/pgpipe
2020-02-13T19:50:18,710   copying pgpipe/bedtools.py -> build/lib/pgpipe
2020-02-13T19:50:18,713   copying pgpipe/eigenstrat_fstats.py -> build/lib/pgpipe
2020-02-13T19:50:18,717   copying pgpipe/picard.py -> build/lib/pgpipe
2020-02-13T19:50:18,721   copying pgpipe/vcf_filter_vcftools.py -> build/lib/pgpipe
2020-02-13T19:50:18,726   copying pgpipe/informative_loci_filter.py -> build/lib/pgpipe
2020-02-13T19:50:18,732   copying pgpipe/bed_utilities.py -> build/lib/pgpipe
2020-02-13T19:50:18,737   copying pgpipe/plink.py -> build/lib/pgpipe
2020-02-13T19:50:18,744   copying pgpipe/vcf_phase.py -> build/lib/pgpipe
2020-02-13T19:50:18,749   copying pgpipe/filter_single_vcf.py -> build/lib/pgpipe
2020-02-13T19:50:18,752   copying pgpipe/site_stats.py -> build/lib/pgpipe
2020-02-13T19:50:18,755   copying pgpipe/__init__.py -> build/lib/pgpipe
2020-02-13T19:50:18,758   running egg_info
2020-02-13T19:50:18,781   writing py_popgen.egg-info/PKG-INFO
2020-02-13T19:50:18,784   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2020-02-13T19:50:18,787   writing requirements to py_popgen.egg-info/requires.txt
2020-02-13T19:50:18,789   writing top-level names to py_popgen.egg-info/top_level.txt
2020-02-13T19:50:18,802   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-02-13T19:50:18,806   reading manifest template 'MANIFEST.in'
2020-02-13T19:50:18,848   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-02-13T19:50:18,852   copying pgpipe/test_cython.pyx -> build/lib/pgpipe
2020-02-13T19:50:18,861   running build_scripts
2020-02-13T19:50:18,862   creating build/scripts-3.7
2020-02-13T19:50:18,864   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.7
2020-02-13T19:50:18,870   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.7
2020-02-13T19:50:18,875   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.7
2020-02-13T19:50:18,879   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.7
2020-02-13T19:50:18,885   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.7
2020-02-13T19:50:18,891   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.7
2020-02-13T19:50:18,897   copying and adjusting pgpipe/bed_utilities.py -> build/scripts-3.7
2020-02-13T19:50:18,904   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.7
2020-02-13T19:50:18,909   copying and adjusting pgpipe/convert.py -> build/scripts-3.7
2020-02-13T19:50:18,915   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.7
2020-02-13T19:50:18,920   copying and adjusting pgpipe/admixture.py -> build/scripts-3.7
2020-02-13T19:50:18,924   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.7
2020-02-13T19:50:18,928   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.7
2020-02-13T19:50:18,931   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.7
2020-02-13T19:50:18,936   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.7
2020-02-13T19:50:18,940   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.7
2020-02-13T19:50:18,944   copying pgpipe/vcf_split_pysam.py -> build/scripts-3.7
2020-02-13T19:50:18,949   copying pgpipe/bed_invert.py -> build/scripts-3.7
2020-02-13T19:50:18,952   changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755
2020-02-13T19:50:18,952   changing mode of build/scripts-3.7/vcf_calc.py from 644 to 755
2020-02-13T19:50:18,953   changing mode of build/scripts-3.7/vcf_split.py from 644 to 755
2020-02-13T19:50:18,953   changing mode of build/scripts-3.7/vcf_phase.py from 644 to 755
2020-02-13T19:50:18,954   changing mode of build/scripts-3.7/four_gamete.py from 644 to 755
2020-02-13T19:50:18,955   changing mode of build/scripts-3.7/stat_sampler.py from 644 to 755
2020-02-13T19:50:18,957   changing mode of build/scripts-3.7/bed_utilities.py from 644 to 755
2020-02-13T19:50:18,958   changing mode of build/scripts-3.7/informative_loci_filter.py from 644 to 755
2020-02-13T19:50:18,959   changing mode of build/scripts-3.7/convert.py from 644 to 755
2020-02-13T19:50:18,960   changing mode of build/scripts-3.7/vcf_to_ima.py from 644 to 755
2020-02-13T19:50:18,961   changing mode of build/scripts-3.7/admixture.py from 644 to 755
2020-02-13T19:50:18,962   changing mode of build/scripts-3.7/plink_ld.py from 644 to 755
2020-02-13T19:50:18,963   changing mode of build/scripts-3.7/ima3_wrapper.py from 644 to 755
2020-02-13T19:50:18,964   changing mode of build/scripts-3.7/eigenstrat_fstats.py from 644 to 755
2020-02-13T19:50:18,965   changing mode of build/scripts-3.7/vcf_liftover.py from 644 to 755
2020-02-13T19:50:18,965   changing mode of build/scripts-3.7/vcf_utilities.py from 644 to 755
2020-02-13T19:50:18,971   installing to build/bdist.linux-armv7l/wheel
2020-02-13T19:50:18,972   running install
2020-02-13T19:50:18,975   running install_lib
2020-02-13T19:50:18,980   creating build/bdist.linux-armv7l
2020-02-13T19:50:18,981   creating build/bdist.linux-armv7l/wheel
2020-02-13T19:50:18,985   creating build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:18,987   copying build/lib/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:18,991   copying build/lib/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:18,995   copying build/lib/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:18,999   copying build/lib/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,003   copying build/lib/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,007   copying build/lib/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,012   copying build/lib/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,016   copying build/lib/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,021   copying build/lib/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,028   copying build/lib/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,033   copying build/lib/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,039   copying build/lib/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,044   copying build/lib/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,050   copying build/lib/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,056   copying build/lib/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,063   copying build/lib/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,068   copying build/lib/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,074   copying build/lib/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,079   copying build/lib/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,087   copying build/lib/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,092   copying build/lib/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,095   copying build/lib/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,100   copying build/lib/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,105   copying build/lib/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,110   copying build/lib/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,115   copying build/lib/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,120   copying build/lib/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,126   copying build/lib/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,131   copying build/lib/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,138   copying build/lib/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,144   copying build/lib/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,149   copying build/lib/pgpipe/misc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,153   copying build/lib/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,158   copying build/lib/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,161   copying build/lib/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,166   copying build/lib/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,169   copying build/lib/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,173   copying build/lib/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,178   copying build/lib/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,185   copying build/lib/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,190   copying build/lib/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,195   copying build/lib/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,200   copying build/lib/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,204   copying build/lib/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,208   copying build/lib/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,212   copying build/lib/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,216   copying build/lib/pgpipe/bed_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,220   copying build/lib/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,224   copying build/lib/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,229   copying build/lib/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,233   copying build/lib/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,236   copying build/lib/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-02-13T19:50:19,239   running install_egg_info
2020-02-13T19:50:19,260   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.7-py3.7.egg-info
2020-02-13T19:50:19,277   running install_scripts
2020-02-13T19:50:19,361   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data
2020-02-13T19:50:19,362   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,364   copying build/scripts-3.7/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,368   copying build/scripts-3.7/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,373   copying build/scripts-3.7/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,377   copying build/scripts-3.7/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,381   copying build/scripts-3.7/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,384   copying build/scripts-3.7/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,391   copying build/scripts-3.7/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,399   copying build/scripts-3.7/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,406   copying build/scripts-3.7/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,410   copying build/scripts-3.7/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,414   copying build/scripts-3.7/bed_invert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,417   copying build/scripts-3.7/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,421   copying build/scripts-3.7/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,426   copying build/scripts-3.7/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,431   copying build/scripts-3.7/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,435   copying build/scripts-3.7/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,439   copying build/scripts-3.7/bed_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,443   copying build/scripts-3.7/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts
2020-02-13T19:50:19,448   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_utilities.py to 755
2020-02-13T19:50:19,448   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_calc.py to 755
2020-02-13T19:50:19,449   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/stat_sampler.py to 755
2020-02-13T19:50:19,450   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/ima3_wrapper.py to 755
2020-02-13T19:50:19,450   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_liftover.py to 755
2020-02-13T19:50:19,451   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_split.py to 755
2020-02-13T19:50:19,452   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_to_ima.py to 755
2020-02-13T19:50:19,452   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_filter.py to 755
2020-02-13T19:50:19,453   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/plink_ld.py to 755
2020-02-13T19:50:19,454   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/convert.py to 755
2020-02-13T19:50:19,454   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/bed_invert.py to 755
2020-02-13T19:50:19,455   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_split_pysam.py to 755
2020-02-13T19:50:19,456   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/admixture.py to 755
2020-02-13T19:50:19,456   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/four_gamete.py to 755
2020-02-13T19:50:19,457   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/eigenstrat_fstats.py to 755
2020-02-13T19:50:19,457   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/informative_loci_filter.py to 755
2020-02-13T19:50:19,458   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/bed_utilities.py to 755
2020-02-13T19:50:19,458   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.data/scripts/vcf_phase.py to 755
2020-02-13T19:50:19,499   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.7.dist-info/WHEEL
2020-02-13T19:50:19,503   creating '/tmp/pip-wheel-q3twln5z/py_popgen-0.1.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-02-13T19:50:19,508   adding 'pgpipe/__init__.py'
2020-02-13T19:50:19,512   adding 'pgpipe/admixtools.py'
2020-02-13T19:50:19,516   adding 'pgpipe/admixture.py'
2020-02-13T19:50:19,518   adding 'pgpipe/argparse_sets.py'
2020-02-13T19:50:19,523   adding 'pgpipe/bcftools.py'
2020-02-13T19:50:19,525   adding 'pgpipe/beagle.py'
2020-02-13T19:50:19,528   adding 'pgpipe/bed_invert.py'
2020-02-13T19:50:19,532   adding 'pgpipe/bed_utilities.py'
2020-02-13T19:50:19,534   adding 'pgpipe/bedtools.py'
2020-02-13T19:50:19,538   adding 'pgpipe/convert.py'
2020-02-13T19:50:19,542   adding 'pgpipe/eigenstrat_fstats.py'
2020-02-13T19:50:19,545   adding 'pgpipe/extend_loci.py'
2020-02-13T19:50:19,552   adding 'pgpipe/fasta.py'
2020-02-13T19:50:19,554   adding 'pgpipe/fasta_utilities.py'
2020-02-13T19:50:19,557   adding 'pgpipe/filter_single_vcf.py'
2020-02-13T19:50:19,564   adding 'pgpipe/four_gamete.py'
2020-02-13T19:50:19,569   adding 'pgpipe/genome_region.py'
2020-02-13T19:50:19,572   adding 'pgpipe/get_nonmissing_chunks.py'
2020-02-13T19:50:19,574   adding 'pgpipe/graph_plotter.py'
2020-02-13T19:50:19,577   adding 'pgpipe/ima3_wrapper.py'
2020-02-13T19:50:19,579   adding 'pgpipe/ima_priors.py'
2020-02-13T19:50:19,582   adding 'pgpipe/ima_to_treemix.py'
2020-02-13T19:50:19,585   adding 'pgpipe/informative_loci_filter.py'
2020-02-13T19:50:19,587   adding 'pgpipe/logging_module.py'
2020-02-13T19:50:19,589   adding 'pgpipe/min_pop_filter.py'
2020-02-13T19:50:19,592   adding 'pgpipe/misc.py'
2020-02-13T19:50:19,595   adding 'pgpipe/model.py'
2020-02-13T19:50:19,598   adding 'pgpipe/model_creator.py'
2020-02-13T19:50:19,602   adding 'pgpipe/model_sampler.py'
2020-02-13T19:50:19,604   adding 'pgpipe/parse_functions.py'
2020-02-13T19:50:19,607   adding 'pgpipe/picard.py'
2020-02-13T19:50:19,611   adding 'pgpipe/plink.py'
2020-02-13T19:50:19,616   adding 'pgpipe/plink_ld.py'
2020-02-13T19:50:19,619   adding 'pgpipe/shapeit.py'
2020-02-13T19:50:19,621   adding 'pgpipe/site_stats.py'
2020-02-13T19:50:19,625   adding 'pgpipe/stat_sampler.py'
2020-02-13T19:50:19,628   adding 'pgpipe/subtract_bed.py'
2020-02-13T19:50:19,630   adding 'pgpipe/test_cython.pyx'
2020-02-13T19:50:19,635   adding 'pgpipe/vcf_calc.py'
2020-02-13T19:50:19,641   adding 'pgpipe/vcf_filter.py'
2020-02-13T19:50:19,647   adding 'pgpipe/vcf_filter_vcftools.py'
2020-02-13T19:50:19,650   adding 'pgpipe/vcf_liftover.py'
2020-02-13T19:50:19,657   adding 'pgpipe/vcf_phase.py'
2020-02-13T19:50:19,662   adding 'pgpipe/vcf_reader_func.py'
2020-02-13T19:50:19,666   adding 'pgpipe/vcf_ref_to_seq.py'
2020-02-13T19:50:19,670   adding 'pgpipe/vcf_sampler.py'
2020-02-13T19:50:19,675   adding 'pgpipe/vcf_split.py'
2020-02-13T19:50:19,679   adding 'pgpipe/vcf_split_pysam.py'
2020-02-13T19:50:19,685   adding 'pgpipe/vcf_to_ima.py'
2020-02-13T19:50:19,688   adding 'pgpipe/vcf_to_treemix.py'
2020-02-13T19:50:19,691   adding 'pgpipe/vcf_utilities.py'
2020-02-13T19:50:19,696   adding 'pgpipe/vcftools.py'
2020-02-13T19:50:19,702   adding 'py_popgen-0.1.7.data/scripts/admixture.py'
2020-02-13T19:50:19,705   adding 'py_popgen-0.1.7.data/scripts/bed_invert.py'
2020-02-13T19:50:19,708   adding 'py_popgen-0.1.7.data/scripts/bed_utilities.py'
2020-02-13T19:50:19,712   adding 'py_popgen-0.1.7.data/scripts/convert.py'
2020-02-13T19:50:19,716   adding 'py_popgen-0.1.7.data/scripts/eigenstrat_fstats.py'
2020-02-13T19:50:19,724   adding 'py_popgen-0.1.7.data/scripts/four_gamete.py'
2020-02-13T19:50:19,727   adding 'py_popgen-0.1.7.data/scripts/ima3_wrapper.py'
2020-02-13T19:50:19,731   adding 'py_popgen-0.1.7.data/scripts/informative_loci_filter.py'
2020-02-13T19:50:19,735   adding 'py_popgen-0.1.7.data/scripts/plink_ld.py'
2020-02-13T19:50:19,739   adding 'py_popgen-0.1.7.data/scripts/stat_sampler.py'
2020-02-13T19:50:19,745   adding 'py_popgen-0.1.7.data/scripts/vcf_calc.py'
2020-02-13T19:50:19,751   adding 'py_popgen-0.1.7.data/scripts/vcf_filter.py'
2020-02-13T19:50:19,755   adding 'py_popgen-0.1.7.data/scripts/vcf_liftover.py'
2020-02-13T19:50:19,762   adding 'py_popgen-0.1.7.data/scripts/vcf_phase.py'
2020-02-13T19:50:19,766   adding 'py_popgen-0.1.7.data/scripts/vcf_split.py'
2020-02-13T19:50:19,770   adding 'py_popgen-0.1.7.data/scripts/vcf_split_pysam.py'
2020-02-13T19:50:19,776   adding 'py_popgen-0.1.7.data/scripts/vcf_to_ima.py'
2020-02-13T19:50:19,780   adding 'py_popgen-0.1.7.data/scripts/vcf_utilities.py'
2020-02-13T19:50:19,784   adding 'py_popgen-0.1.7.dist-info/METADATA'
2020-02-13T19:50:19,786   adding 'py_popgen-0.1.7.dist-info/WHEEL'
2020-02-13T19:50:19,787   adding 'py_popgen-0.1.7.dist-info/top_level.txt'
2020-02-13T19:50:19,789   adding 'py_popgen-0.1.7.dist-info/RECORD'
2020-02-13T19:50:19,802   removing build/bdist.linux-armv7l/wheel
2020-02-13T19:50:19,964   Building wheel for py-popgen (setup.py): finished with status 'done'
2020-02-13T19:50:19,971   Created wheel for py-popgen: filename=py_popgen-0.1.7-py3-none-any.whl size=259393 sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a
2020-02-13T19:50:19,972   Stored in directory: /tmp/pip-ephem-wheel-cache-18col2j8/wheels/0f/e7/54/8af1abbda62577454e0a6566ca8b947b255fda9a82346f41d5
2020-02-13T19:50:19,975 Successfully built py-popgen
2020-02-13T19:50:20,130 Cleaning up...
2020-02-13T19:50:20,131   Removing source in /tmp/pip-wheel-z3tbyxl5/py-popgen
2020-02-13T19:50:20,263 Removed build tracker: '/tmp/pip-req-tracker-qmmf6kv8'