2020-02-14T08:45:52,768 Created temporary directory: /tmp/pip-ephem-wheel-cache-fdzp3xz6
2020-02-14T08:45:52,771 Created temporary directory: /tmp/pip-req-tracker-5is9ynxy
2020-02-14T08:45:52,772 Initialized build tracking at /tmp/pip-req-tracker-5is9ynxy
2020-02-14T08:45:52,772 Created build tracker: /tmp/pip-req-tracker-5is9ynxy
2020-02-14T08:45:52,773 Entered build tracker: /tmp/pip-req-tracker-5is9ynxy
2020-02-14T08:45:52,774 Created temporary directory: /tmp/pip-wheel-2lhkidbb
2020-02-14T08:45:52,778 1 location(s) to search for versions of jcvi:
2020-02-14T08:45:52,778 * https://pypi.org/simple/jcvi/
2020-02-14T08:45:52,779 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/
2020-02-14T08:45:52,780 Getting page https://pypi.org/simple/jcvi/
2020-02-14T08:45:52,782 Found index url https://pypi.org/simple
2020-02-14T08:45:52,785 Getting credentials from keyring for https://pypi.org/simple
2020-02-14T08:45:52,785 Getting credentials from keyring for pypi.org
2020-02-14T08:45:53,139   Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7
2020-02-14T08:45:53,140   Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8
2020-02-14T08:45:53,141   Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9
2020-02-14T08:45:53,141   Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10
2020-02-14T08:45:53,142   Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12
2020-02-14T08:45:53,142   Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1
2020-02-14T08:45:53,143   Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2
2020-02-14T08:45:53,143   Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3
2020-02-14T08:45:53,144   Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5
2020-02-14T08:45:53,144   Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6
2020-02-14T08:45:53,145   Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7
2020-02-14T08:45:53,145   Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8
2020-02-14T08:45:53,146   Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9
2020-02-14T08:45:53,146   Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1
2020-02-14T08:45:53,147   Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2
2020-02-14T08:45:53,147   Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6
2020-02-14T08:45:53,148   Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9
2020-02-14T08:45:53,148   Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1
2020-02-14T08:45:53,148   Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3
2020-02-14T08:45:53,149   Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4
2020-02-14T08:45:53,149   Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5
2020-02-14T08:45:53,150   Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6
2020-02-14T08:45:53,150   Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7
2020-02-14T08:45:53,151   Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4
2020-02-14T08:45:53,152   Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12
2020-02-14T08:45:53,152   Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6
2020-02-14T08:45:53,153   Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9
2020-02-14T08:45:53,153   Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10
2020-02-14T08:45:53,154   Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11
2020-02-14T08:45:53,154   Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12
2020-02-14T08:45:53,155   Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13
2020-02-14T08:45:53,155   Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14
2020-02-14T08:45:53,155   Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1
2020-02-14T08:45:53,156   Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2
2020-02-14T08:45:53,156   Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3
2020-02-14T08:45:53,172 Given no hashes to check 1 links for project 'jcvi': discarding no candidates
2020-02-14T08:45:53,174 Using version 1.0.2 (newest of versions: 1.0.2)
2020-02-14T08:45:53,179 Collecting jcvi==1.0.2
2020-02-14T08:45:53,182   Created temporary directory: /tmp/pip-unpack-6box32dg
2020-02-14T08:45:53,184   Getting credentials from keyring for files.pythonhosted.org
2020-02-14T08:45:53,270   Downloading jcvi-1.0.2.tar.gz (813 kB)
2020-02-14T08:45:54,496   Added jcvi==1.0.2 from https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 to build tracker '/tmp/pip-req-tracker-5is9ynxy'
2020-02-14T08:45:54,498     Running setup.py (path:/tmp/pip-wheel-2lhkidbb/jcvi/setup.py) egg_info for package jcvi
2020-02-14T08:45:54,499     Running command python setup.py egg_info
2020-02-14T08:45:56,973     running egg_info
2020-02-14T08:45:56,977     creating /tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info
2020-02-14T08:45:56,978     writing /tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/PKG-INFO
2020-02-14T08:45:56,985     writing dependency_links to /tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/dependency_links.txt
2020-02-14T08:45:56,989     writing requirements to /tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/requires.txt
2020-02-14T08:45:56,991     writing top-level names to /tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/top_level.txt
2020-02-14T08:45:56,994     writing manifest file '/tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt'
2020-02-14T08:45:57,033     reading manifest file '/tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt'
2020-02-14T08:45:57,036     reading manifest template 'MANIFEST.in'
2020-02-14T08:45:57,057     writing manifest file '/tmp/pip-wheel-2lhkidbb/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt'
2020-02-14T08:45:57,059     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v1.0.2' to '1.0.2'
2020-02-14T08:45:57,060       normalized_version,
2020-02-14T08:45:57,226   Source in /tmp/pip-wheel-2lhkidbb/jcvi has version 1.0.2, which satisfies requirement jcvi==1.0.2 from https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9
2020-02-14T08:45:57,227   Removed jcvi==1.0.2 from https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 from build tracker '/tmp/pip-req-tracker-5is9ynxy'
2020-02-14T08:45:57,232 Building wheels for collected packages: jcvi
2020-02-14T08:45:57,240   Created temporary directory: /tmp/pip-wheel-l_dxvyzc
2020-02-14T08:45:57,241   Building wheel for jcvi (setup.py): started
2020-02-14T08:45:57,241   Destination directory: /tmp/pip-wheel-l_dxvyzc
2020-02-14T08:45:57,241   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2lhkidbb/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2lhkidbb/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-l_dxvyzc
2020-02-14T08:45:59,554   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v1.0.2' to '1.0.2'
2020-02-14T08:45:59,555     normalized_version,
2020-02-14T08:45:59,639   running bdist_wheel
2020-02-14T08:45:59,646   running build
2020-02-14T08:45:59,647   running build_py
2020-02-14T08:45:59,656   creating build
2020-02-14T08:45:59,656   creating build/lib.linux-armv7l-3.7
2020-02-14T08:45:59,658   creating build/lib.linux-armv7l-3.7/jcvi
2020-02-14T08:45:59,660   copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi
2020-02-14T08:45:59,663   copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi
2020-02-14T08:45:59,668   creating build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,670   copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,675   copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,681   copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,690   copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,696   copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,700   copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,704   copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,707   copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,711   copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,717   copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,723   copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,730   copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,736   copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,740   copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,743   copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T08:45:59,748   creating build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,750   copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,755   copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,760   copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,766   copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,774   copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,779   copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,784   copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,788   copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,792   copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,795   copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T08:45:59,804   creating build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,806   copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,816   copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,820   copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,824   copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,828   copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,833   copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,837   copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,843   copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,850   copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,855   copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T08:45:59,861   creating build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,863   copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,867   copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,872   copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,877   copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,883   copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,890   copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,898   copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,902   copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,907   copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,912   copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,917   copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,923   copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,930   copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,936   copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,941   copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,944   copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,948   copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,954   copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,957   copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,964   copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,970   copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,976   copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,981   copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,985   copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,992   copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,996   copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:45:59,999   copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:46:00,011   creating build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,014   copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,020   copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,024   copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,028   copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,032   copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,035   copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,039   copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,044   copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,050   copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,057   copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,063   copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,067   copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,071   copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,076   copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,079   copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,085   copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,097   copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,102   copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,108   copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,112   copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,119   copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,126   copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,133   copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,138   copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,144   copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,147   copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,151   copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,154   copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,157   copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,163   creating build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,165   copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,169   copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,174   copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,177   copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,181   copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,187   copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,192   copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,197   copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,203   copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,207   copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,212   copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,215   copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,219   copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,222   copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,225   copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,229   copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,234   copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,238   copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,242   copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,248   copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,252   copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,258   copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T08:46:00,266   creating build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,268   copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,273   copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,277   copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,281   copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,285   copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,289   copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,293   copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,297   copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,301   copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,306   copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,312   copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,319   copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,326   copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,330   copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,334   copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,340   copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,345   copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T08:46:00,350   creating build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,352   copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,357   copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,362   copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,366   copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,371   copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,375   copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,379   copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,383   copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,388   copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,393   copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,398   copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,403   copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T08:46:00,409   creating build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,410   copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,415   copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,419   copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,424   copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,429   copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,435   copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,441   copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,446   copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,450   copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,453   copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,457   copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,461   copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T08:46:00,466   creating build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,468   copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,472   copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,476   copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,479   copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,483   copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,487   copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,493   copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,500   copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,507   copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,511   copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,515   copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,519   copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,523   copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,532   copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,537   copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,543   copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,550   copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,556   copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,561   copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,566   copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,572   copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,576   copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,579   copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,583   copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,587   copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,594   copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,600   copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,606   copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T08:46:00,611   creating build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,612   copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,615   running egg_info
2020-02-14T08:46:00,629   writing jcvi.egg-info/PKG-INFO
2020-02-14T08:46:00,633   writing dependency_links to jcvi.egg-info/dependency_links.txt
2020-02-14T08:46:00,636   writing requirements to jcvi.egg-info/requires.txt
2020-02-14T08:46:00,638   writing top-level names to jcvi.egg-info/top_level.txt
2020-02-14T08:46:00,672   reading manifest file 'jcvi.egg-info/SOURCES.txt'
2020-02-14T08:46:00,686   reading manifest template 'MANIFEST.in'
2020-02-14T08:46:00,713   writing manifest file 'jcvi.egg-info/SOURCES.txt'
2020-02-14T08:46:00,725   copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:46:00,729   copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:00,733   copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,738   copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,746   copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,751   copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,757   copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,764   copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,770   copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,775   copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,779   copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,787   copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,791   copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,798   copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,805   copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T08:46:00,838   UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py
2020-02-14T08:46:00,841   set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.2'
2020-02-14T08:46:00,841   running build_ext
2020-02-14T08:46:00,995   cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c
2020-02-14T08:46:02,097   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2lhkidbb/jcvi/jcvi/assembly/chic.pyx
2020-02-14T08:46:02,098     tree = Parsing.p_module(s, pxd, full_module_name)
2020-02-14T08:46:05,597   building 'jcvi.assembly.chic' extension
2020-02-14T08:46:05,598   creating build/temp.linux-armv7l-3.7
2020-02-14T08:46:05,599   creating build/temp.linux-armv7l-3.7/jcvi
2020-02-14T08:46:05,600   creating build/temp.linux-armv7l-3.7/jcvi/assembly
2020-02-14T08:46:05,601   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3
2020-02-14T08:46:06,217   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-02-14T08:46:06,217                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-02-14T08:46:06,218                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-02-14T08:46:06,219                    from jcvi/assembly/chic.c:613:
2020-02-14T08:46:06,219   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-02-14T08:46:06,220    #warning "Using deprecated NumPy API, disable it with " \
2020-02-14T08:46:06,220     ^~~~~~~
2020-02-14T08:46:13,305   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so
2020-02-14T08:46:13,506   cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c
2020-02-14T08:46:14,652   building 'jcvi.formats.cblast' extension
2020-02-14T08:46:14,653   creating build/temp.linux-armv7l-3.7/jcvi/formats
2020-02-14T08:46:14,654   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3
2020-02-14T08:46:27,591   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so
2020-02-14T08:46:27,838   installing to build/bdist.linux-armv7l/wheel
2020-02-14T08:46:27,839   running install
2020-02-14T08:46:27,841   running install_lib
2020-02-14T08:46:27,851   creating build/bdist.linux-armv7l
2020-02-14T08:46:27,853   creating build/bdist.linux-armv7l/wheel
2020-02-14T08:46:27,857   creating build/bdist.linux-armv7l/wheel/jcvi
2020-02-14T08:46:27,860   creating build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,862   copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,867   copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,871   copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,877   copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,882   copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,888   copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,893   copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,898   copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,903   copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,907   copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,911   copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,915   copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,919   copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,926   copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,930   copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T08:46:27,936   creating build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,938   copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,943   copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,946   copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,950   copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,956   copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,960   copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,966   copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,971   copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,977   copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,981   copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T08:46:27,986   creating build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:27,988   copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:27,994   copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:27,998   copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,002   copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,007   copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,014   copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,019   copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,025   copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,033   copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,038   copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T08:46:28,045   creating build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,046   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,051   copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,055   copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,059   copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,063   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,067   copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,074   copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,083   copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,088   copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,093   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,097   copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,102   copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,106   copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,113   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,131   copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,134   copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,138   copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,141   copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,145   copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,152   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,157   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,163   copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,169   copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,175   copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,181   copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,187   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,196   copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,202   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,205   copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T08:46:28,212   creating build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,213   copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,217   copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,221   copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,225   copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,229   copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,234   copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,239   copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,244   copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,250   copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,257   copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,264   copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,269   copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,273   copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,277   copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,280   copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,284   copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,292   copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,296   copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,301   copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,304   copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,312   copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,321   copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,328   copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,333   copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,339   copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,342   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,346   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,376   copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,380   copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,383   copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,386   copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T08:46:28,391   creating build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,393   copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,397   copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,401   copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,405   copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,408   copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,414   copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,420   copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,425   copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,431   copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,437   copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,443   copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,449   copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,453   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,456   copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,459   copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,463   copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,468   copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,474   copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,480   copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,486   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,490   copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,494   copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T08:46:28,500   creating build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,502   creating build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,504   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,509   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,518   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,524   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,529   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,535   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,539   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,543   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,546   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,552   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,556   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,564   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,567   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,570   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T08:46:28,575   copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,582   copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,588   copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,594   copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,598   copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,602   copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,606   copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,610   copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,615   copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,621   copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,626   copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,634   copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,637   copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,641   copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,644   copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,648   copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,653   copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T08:46:28,658   creating build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,660   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,666   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,672   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,677   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,680   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,684   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,688   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,692   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,697   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,703   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,708   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,714   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T08:46:28,720   creating build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,722   copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,728   copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,735   copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,742   copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,749   copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,755   copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,759   copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,763   copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,767   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,771   copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,775   copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,780   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T08:46:28,784   copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-02-14T08:46:28,791   creating build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,794   copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,800   copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,805   copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,810   copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,815   copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,819   copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,823   copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,828   copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,832   copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,835   copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,839   copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,845   copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,851   copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,859   copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,863   copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,867   copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,871   copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,875   copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,879   copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,884   copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,891   copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,896   copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,900   copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,904   copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,908   copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,912   copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,917   copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,923   copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T08:46:28,928   copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-02-14T08:46:28,932   running install_egg_info
2020-02-14T08:46:28,947   Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.2-py3.7.egg-info
2020-02-14T08:46:28,972   running install_scripts
2020-02-14T08:46:29,080   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-02-14T08:46:29,089   creating build/bdist.linux-armv7l/wheel/jcvi-1.0.2.dist-info/WHEEL
2020-02-14T08:46:29,094   creating '/tmp/pip-wheel-l_dxvyzc/jcvi-1.0.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-02-14T08:46:29,098   adding 'jcvi/__init__.py'
2020-02-14T08:46:29,100   adding 'jcvi/_version.py'
2020-02-14T08:46:29,103   adding 'jcvi/algorithms/__init__.py'
2020-02-14T08:46:29,105   adding 'jcvi/algorithms/__main__.py'
2020-02-14T08:46:29,107   adding 'jcvi/algorithms/ec.py'
2020-02-14T08:46:29,110   adding 'jcvi/algorithms/formula.py'
2020-02-14T08:46:29,114   adding 'jcvi/algorithms/graph.py'
2020-02-14T08:46:29,116   adding 'jcvi/algorithms/lis.py'
2020-02-14T08:46:29,121   adding 'jcvi/algorithms/lpsolve.py'
2020-02-14T08:46:29,124   adding 'jcvi/algorithms/matrix.py'
2020-02-14T08:46:29,128   adding 'jcvi/algorithms/maxsum.py'
2020-02-14T08:46:29,131   adding 'jcvi/algorithms/ml.py'
2020-02-14T08:46:29,133   adding 'jcvi/algorithms/supermap.py'
2020-02-14T08:46:29,136   adding 'jcvi/algorithms/tsp.py'
2020-02-14T08:46:29,139   adding 'jcvi/annotation/__init__.py'
2020-02-14T08:46:29,141   adding 'jcvi/annotation/__main__.py'
2020-02-14T08:46:29,146   adding 'jcvi/annotation/ahrd.py'
2020-02-14T08:46:29,149   adding 'jcvi/annotation/automaton.py'
2020-02-14T08:46:29,152   adding 'jcvi/annotation/depth.py'
2020-02-14T08:46:29,154   adding 'jcvi/annotation/evm.py'
2020-02-14T08:46:29,158   adding 'jcvi/annotation/maker.py'
2020-02-14T08:46:29,162   adding 'jcvi/annotation/pasa.py'
2020-02-14T08:46:29,166   adding 'jcvi/annotation/qc.py'
2020-02-14T08:46:29,174   adding 'jcvi/annotation/reformat.py'
2020-02-14T08:46:29,178   adding 'jcvi/annotation/stats.py'
2020-02-14T08:46:29,180   adding 'jcvi/annotation/train.py'
2020-02-14T08:46:29,184   adding 'jcvi/apps/__init__.py'
2020-02-14T08:46:29,186   adding 'jcvi/apps/__main__.py'
2020-02-14T08:46:29,190   adding 'jcvi/apps/align.py'
2020-02-14T08:46:29,201   adding 'jcvi/apps/base.py'
2020-02-14T08:46:29,205   adding 'jcvi/apps/biomart.py'
2020-02-14T08:46:29,208   adding 'jcvi/apps/blastplus.py'
2020-02-14T08:46:29,211   adding 'jcvi/apps/bowtie.py'
2020-02-14T08:46:29,213   adding 'jcvi/apps/bwa.py'
2020-02-14T08:46:29,216   adding 'jcvi/apps/cap3.py'
2020-02-14T08:46:29,219   adding 'jcvi/apps/cdhit.py'
2020-02-14T08:46:29,222   adding 'jcvi/apps/console.py'
2020-02-14T08:46:29,224   adding 'jcvi/apps/emboss.py'
2020-02-14T08:46:29,228   adding 'jcvi/apps/fetch.py'
2020-02-14T08:46:29,233   adding 'jcvi/apps/gbsubmit.py'
2020-02-14T08:46:29,236   adding 'jcvi/apps/gmap.py'
2020-02-14T08:46:29,240   adding 'jcvi/apps/grid.py'
2020-02-14T08:46:29,247   adding 'jcvi/apps/ks.py'
2020-02-14T08:46:29,250   adding 'jcvi/apps/lastz.py'
2020-02-14T08:46:29,252   adding 'jcvi/apps/mask.py'
2020-02-14T08:46:29,259   adding 'jcvi/apps/phylo.py'
2020-02-14T08:46:29,262   adding 'jcvi/apps/r.py'
2020-02-14T08:46:29,264   adding 'jcvi/apps/restriction.py'
2020-02-14T08:46:29,267   adding 'jcvi/apps/script.py'
2020-02-14T08:46:29,269   adding 'jcvi/apps/softlink.py'
2020-02-14T08:46:29,272   adding 'jcvi/apps/tesseract.py'
2020-02-14T08:46:29,278   adding 'jcvi/apps/uclust.py'
2020-02-14T08:46:29,281   adding 'jcvi/apps/uniprot.py'
2020-02-14T08:46:29,284   adding 'jcvi/apps/vecscreen.py'
2020-02-14T08:46:29,288   adding 'jcvi/assembly/__init__.py'
2020-02-14T08:46:29,290   adding 'jcvi/assembly/__main__.py'
2020-02-14T08:46:29,302   adding 'jcvi/assembly/allmaps.py'
2020-02-14T08:46:29,307   adding 'jcvi/assembly/allpaths.py'
2020-02-14T08:46:29,310   adding 'jcvi/assembly/amos.py'
2020-02-14T08:46:29,314   adding 'jcvi/assembly/automaton.py'
2020-02-14T08:46:29,316   adding 'jcvi/assembly/bambus.py'
2020-02-14T08:46:29,319   adding 'jcvi/assembly/base.py'
2020-02-14T08:46:29,326   adding 'jcvi/assembly/ca.py'
2020-02-14T08:46:29,398   adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so'
2020-02-14T08:46:29,403   adding 'jcvi/assembly/chic.pyx'
2020-02-14T08:46:29,406   adding 'jcvi/assembly/coverage.py'
2020-02-14T08:46:29,409   adding 'jcvi/assembly/gaps.py'
2020-02-14T08:46:29,413   adding 'jcvi/assembly/geneticmap.py'
2020-02-14T08:46:29,420   adding 'jcvi/assembly/goldenpath.py'
2020-02-14T08:46:29,432   adding 'jcvi/assembly/hic.py'
2020-02-14T08:46:29,438   adding 'jcvi/assembly/kmer.py'
2020-02-14T08:46:29,441   adding 'jcvi/assembly/meraculous.py'
2020-02-14T08:46:29,444   adding 'jcvi/assembly/opticalmap.py'
2020-02-14T08:46:29,451   adding 'jcvi/assembly/patch.py'
2020-02-14T08:46:29,454   adding 'jcvi/assembly/pbjelly.py'
2020-02-14T08:46:29,458   adding 'jcvi/assembly/postprocess.py'
2020-02-14T08:46:29,463   adding 'jcvi/assembly/preprocess.py'
2020-02-14T08:46:29,466   adding 'jcvi/assembly/sim.py'
2020-02-14T08:46:29,470   adding 'jcvi/assembly/soap.py'
2020-02-14T08:46:29,473   adding 'jcvi/assembly/sspace.py'
2020-02-14T08:46:29,477   adding 'jcvi/assembly/syntenypath.py'
2020-02-14T08:46:29,480   adding 'jcvi/assembly/trinity.py'
2020-02-14T08:46:29,483   adding 'jcvi/assembly/unitig.py'
2020-02-14T08:46:29,487   adding 'jcvi/compara/__init__.py'
2020-02-14T08:46:29,489   adding 'jcvi/compara/__main__.py'
2020-02-14T08:46:29,492   adding 'jcvi/compara/blastfilter.py'
2020-02-14T08:46:29,498   adding 'jcvi/compara/catalog.py'
2020-02-14T08:46:29,503   adding 'jcvi/compara/fractionation.py'
2020-02-14T08:46:29,506   adding 'jcvi/compara/pad.py'
2020-02-14T08:46:29,510   adding 'jcvi/compara/quota.py'
2020-02-14T08:46:29,513   adding 'jcvi/compara/reconstruct.py'
2020-02-14T08:46:29,516   adding 'jcvi/compara/synfind.py'
2020-02-14T08:46:29,528   adding 'jcvi/compara/synteny.py'
2020-02-14T08:46:29,532   adding 'jcvi/formats/__init__.py'
2020-02-14T08:46:29,535   adding 'jcvi/formats/__main__.py'
2020-02-14T08:46:29,537   adding 'jcvi/formats/ace.py'
2020-02-14T08:46:29,548   adding 'jcvi/formats/agp.py'
2020-02-14T08:46:29,555   adding 'jcvi/formats/base.py'
2020-02-14T08:46:29,569   adding 'jcvi/formats/bed.py'
2020-02-14T08:46:29,577   adding 'jcvi/formats/blast.py'
2020-02-14T08:46:29,581   adding 'jcvi/formats/btab.py'
2020-02-14T08:46:29,730   adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so'
2020-02-14T08:46:29,739   adding 'jcvi/formats/cblast.pyx'
2020-02-14T08:46:29,741   adding 'jcvi/formats/cdt.py'
2020-02-14T08:46:29,744   adding 'jcvi/formats/chain.py'
2020-02-14T08:46:29,747   adding 'jcvi/formats/contig.py'
2020-02-14T08:46:29,751   adding 'jcvi/formats/coords.py'
2020-02-14T08:46:29,754   adding 'jcvi/formats/excel.py'
2020-02-14T08:46:29,768   adding 'jcvi/formats/fasta.py'
2020-02-14T08:46:29,775   adding 'jcvi/formats/fastq.py'
2020-02-14T08:46:29,777   adding 'jcvi/formats/fpc.py'
2020-02-14T08:46:29,781   adding 'jcvi/formats/genbank.py'
2020-02-14T08:46:29,801   adding 'jcvi/formats/gff.py'
2020-02-14T08:46:29,805   adding 'jcvi/formats/html.py'
2020-02-14T08:46:29,807   adding 'jcvi/formats/maf.py'
2020-02-14T08:46:29,811   adding 'jcvi/formats/obo.py'
2020-02-14T08:46:29,813   adding 'jcvi/formats/pdf.py'
2020-02-14T08:46:29,816   adding 'jcvi/formats/posmap.py'
2020-02-14T08:46:29,819   adding 'jcvi/formats/psl.py'
2020-02-14T08:46:29,822   adding 'jcvi/formats/pyblast.py'
2020-02-14T08:46:29,827   adding 'jcvi/formats/sam.py'
2020-02-14T08:46:29,830   adding 'jcvi/formats/sbt.py'
2020-02-14T08:46:29,833   adding 'jcvi/formats/sizes.py'
2020-02-14T08:46:29,838   adding 'jcvi/formats/vcf.py'
2020-02-14T08:46:29,842   adding 'jcvi/graphics/__init__.py'
2020-02-14T08:46:29,844   adding 'jcvi/graphics/__main__.py'
2020-02-14T08:46:29,848   adding 'jcvi/graphics/align.py'
2020-02-14T08:46:29,852   adding 'jcvi/graphics/assembly.py'
2020-02-14T08:46:29,856   adding 'jcvi/graphics/base.py'
2020-02-14T08:46:29,859   adding 'jcvi/graphics/blastplot.py'
2020-02-14T08:46:29,864   adding 'jcvi/graphics/chromosome.py'
2020-02-14T08:46:29,867   adding 'jcvi/graphics/coverage.py'
2020-02-14T08:46:29,871   adding 'jcvi/graphics/dotplot.py'
2020-02-14T08:46:29,875   adding 'jcvi/graphics/glyph.py'
2020-02-14T08:46:29,881   adding 'jcvi/graphics/grabseeds.py'
2020-02-14T08:46:29,883   adding 'jcvi/graphics/graph.py'
2020-02-14T08:46:29,886   adding 'jcvi/graphics/heatmap.py'
2020-02-14T08:46:29,889   adding 'jcvi/graphics/histogram.py'
2020-02-14T08:46:29,892   adding 'jcvi/graphics/karyotype.py'
2020-02-14T08:46:29,897   adding 'jcvi/graphics/landscape.py'
2020-02-14T08:46:29,899   adding 'jcvi/graphics/logo.py'
2020-02-14T08:46:29,902   adding 'jcvi/graphics/mummerplot.py'
2020-02-14T08:46:29,906   adding 'jcvi/graphics/synteny.py'
2020-02-14T08:46:29,909   adding 'jcvi/graphics/tree.py'
2020-02-14T08:46:29,912   adding 'jcvi/graphics/wheel.py'
2020-02-14T08:46:29,915   adding 'jcvi/graphics/whisker.py'
2020-02-14T08:46:29,918   adding 'jcvi/projects/__init__.py'
2020-02-14T08:46:29,920   adding 'jcvi/projects/__main__.py'
2020-02-14T08:46:29,925   adding 'jcvi/projects/age.py'
2020-02-14T08:46:29,927   adding 'jcvi/projects/alfalfa.py'
2020-02-14T08:46:29,931   adding 'jcvi/projects/allmaps.py'
2020-02-14T08:46:29,934   adding 'jcvi/projects/bites.py'
2020-02-14T08:46:29,937   adding 'jcvi/projects/heterosis.py'
2020-02-14T08:46:29,940   adding 'jcvi/projects/ies.py'
2020-02-14T08:46:29,945   adding 'jcvi/projects/misc.py'
2020-02-14T08:46:29,950   adding 'jcvi/projects/napus.py'
2020-02-14T08:46:29,954   adding 'jcvi/projects/pineapple.py'
2020-02-14T08:46:29,957   adding 'jcvi/projects/pistachio.py'
2020-02-14T08:46:29,968   adding 'jcvi/projects/str.py'
2020-02-14T08:46:29,974   adding 'jcvi/projects/synfind.py'
2020-02-14T08:46:29,979   adding 'jcvi/projects/tgbs.py'
2020-02-14T08:46:29,983   adding 'jcvi/utils/__init__.py'
2020-02-14T08:46:29,985   adding 'jcvi/utils/__main__.py'
2020-02-14T08:46:29,990   adding 'jcvi/utils/aws.py'
2020-02-14T08:46:29,993   adding 'jcvi/utils/brewer2mpl.py'
2020-02-14T08:46:29,997   adding 'jcvi/utils/cbook.py'
2020-02-14T08:46:30,000   adding 'jcvi/utils/counter.py'
2020-02-14T08:46:30,003   adding 'jcvi/utils/db.py'
2020-02-14T08:46:30,006   adding 'jcvi/utils/ez_setup.py'
2020-02-14T08:46:30,009   adding 'jcvi/utils/grouper.py'
2020-02-14T08:46:30,012   adding 'jcvi/utils/iter.py'
2020-02-14T08:46:30,015   adding 'jcvi/utils/natsort.py'
2020-02-14T08:46:30,018   adding 'jcvi/utils/orderedcollections.py'
2020-02-14T08:46:30,023   adding 'jcvi/utils/progressbar.py'
2020-02-14T08:46:30,027   adding 'jcvi/utils/range.py'
2020-02-14T08:46:30,030   adding 'jcvi/utils/table.py'
2020-02-14T08:46:30,032   adding 'jcvi/utils/taxonomy.py'
2020-02-14T08:46:30,037   adding 'jcvi/utils/webcolors.py'
2020-02-14T08:46:30,043   adding 'jcvi/utils/data/Airswing.ttf'
2020-02-14T08:46:30,066   adding 'jcvi/utils/data/Collegia.ttf'
2020-02-14T08:46:30,073   adding 'jcvi/utils/data/HookedUp.ttf'
2020-02-14T08:46:30,080   adding 'jcvi/utils/data/Humor-Sans.ttf'
2020-02-14T08:46:30,086   adding 'jcvi/utils/data/TREDs.meta.csv'
2020-02-14T08:46:30,089   adding 'jcvi/utils/data/__init__.py'
2020-02-14T08:46:30,094   adding 'jcvi/utils/data/adapters.fasta'
2020-02-14T08:46:30,096   adding 'jcvi/utils/data/blosum80.mat'
2020-02-14T08:46:30,099   adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc'
2020-02-14T08:46:30,107   adding 'jcvi/utils/data/colorbrewer_all_schemes.json'
2020-02-14T08:46:30,110   adding 'jcvi/utils/data/colorchecker.txt'
2020-02-14T08:46:30,119   adding 'jcvi/utils/data/hg38.band.txt'
2020-02-14T08:46:30,123   adding 'jcvi/utils/data/hg38.chrom.sizes'
2020-02-14T08:46:30,125   adding 'jcvi/utils/data/instance.json'
2020-02-14T08:46:30,128   adding 'jcvi/variation/__init__.py'
2020-02-14T08:46:30,130   adding 'jcvi/variation/__main__.py'
2020-02-14T08:46:30,137   adding 'jcvi/variation/cnv.py'
2020-02-14T08:46:30,140   adding 'jcvi/variation/deconvolute.py'
2020-02-14T08:46:30,143   adding 'jcvi/variation/delly.py'
2020-02-14T08:46:30,147   adding 'jcvi/variation/impute.py'
2020-02-14T08:46:30,149   adding 'jcvi/variation/phase.py'
2020-02-14T08:46:30,152   adding 'jcvi/variation/snp.py'
2020-02-14T08:46:30,162   adding 'jcvi/variation/str.py'
2020-02-14T08:46:30,165   adding 'jcvi/variation/tassel.py'
2020-02-14T08:46:30,169   adding 'jcvi-1.0.2.dist-info/LICENSE'
2020-02-14T08:46:30,171   adding 'jcvi-1.0.2.dist-info/METADATA'
2020-02-14T08:46:30,173   adding 'jcvi-1.0.2.dist-info/WHEEL'
2020-02-14T08:46:30,175   adding 'jcvi-1.0.2.dist-info/top_level.txt'
2020-02-14T08:46:30,179   adding 'jcvi-1.0.2.dist-info/RECORD'
2020-02-14T08:46:30,233   removing build/bdist.linux-armv7l/wheel
2020-02-14T08:46:30,794   Building wheel for jcvi (setup.py): finished with status 'done'
2020-02-14T08:46:30,814   Created wheel for jcvi: filename=jcvi-1.0.2-cp37-cp37m-linux_armv7l.whl size=1191097 sha256=edb40b1654c2f435b386a39631600051180e93e2c1fdaa8c57eab1cc4f0b09b1
2020-02-14T08:46:30,814   Stored in directory: /tmp/pip-ephem-wheel-cache-fdzp3xz6/wheels/63/cd/2d/eb9135cd17043ae6b4ce2129d65e171d054f90566b7aeaff01
2020-02-14T08:46:30,817 Successfully built jcvi
2020-02-14T08:46:31,294 Cleaning up...
2020-02-14T08:46:31,295   Removing source in /tmp/pip-wheel-2lhkidbb/jcvi
2020-02-14T08:46:31,634 Removed build tracker: '/tmp/pip-req-tracker-5is9ynxy'