2020-02-14T11:12:18,210 Created temporary directory: /tmp/pip-ephem-wheel-cache-ivtd6yqp
2020-02-14T11:12:18,214 Created temporary directory: /tmp/pip-req-tracker-p4ygu7y_
2020-02-14T11:12:18,214 Initialized build tracking at /tmp/pip-req-tracker-p4ygu7y_
2020-02-14T11:12:18,215 Created build tracker: /tmp/pip-req-tracker-p4ygu7y_
2020-02-14T11:12:18,215 Entered build tracker: /tmp/pip-req-tracker-p4ygu7y_
2020-02-14T11:12:18,216 Created temporary directory: /tmp/pip-wheel-w7lauqvr
2020-02-14T11:12:18,221 1 location(s) to search for versions of jcvi:
2020-02-14T11:12:18,221 * https://pypi.org/simple/jcvi/
2020-02-14T11:12:18,221 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/
2020-02-14T11:12:18,222 Getting page https://pypi.org/simple/jcvi/
2020-02-14T11:12:18,224 Found index url https://pypi.org/simple
2020-02-14T11:12:18,227 Getting credentials from keyring for https://pypi.org/simple
2020-02-14T11:12:18,227 Getting credentials from keyring for pypi.org
2020-02-14T11:12:18,516   Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7
2020-02-14T11:12:18,517   Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8
2020-02-14T11:12:18,517   Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9
2020-02-14T11:12:18,518   Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10
2020-02-14T11:12:18,518   Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12
2020-02-14T11:12:18,519   Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1
2020-02-14T11:12:18,519   Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2
2020-02-14T11:12:18,520   Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3
2020-02-14T11:12:18,520   Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5
2020-02-14T11:12:18,521   Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6
2020-02-14T11:12:18,521   Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7
2020-02-14T11:12:18,522   Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8
2020-02-14T11:12:18,522   Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9
2020-02-14T11:12:18,523   Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1
2020-02-14T11:12:18,523   Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2
2020-02-14T11:12:18,524   Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6
2020-02-14T11:12:18,524   Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9
2020-02-14T11:12:18,525   Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1
2020-02-14T11:12:18,525   Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3
2020-02-14T11:12:18,525   Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4
2020-02-14T11:12:18,526   Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5
2020-02-14T11:12:18,526   Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6
2020-02-14T11:12:18,527   Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7
2020-02-14T11:12:18,527   Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4
2020-02-14T11:12:18,528   Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12
2020-02-14T11:12:18,528   Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6
2020-02-14T11:12:18,529   Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9
2020-02-14T11:12:18,529   Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10
2020-02-14T11:12:18,530   Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11
2020-02-14T11:12:18,530   Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12
2020-02-14T11:12:18,531   Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13
2020-02-14T11:12:18,532   Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14
2020-02-14T11:12:18,532   Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1
2020-02-14T11:12:18,532   Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2
2020-02-14T11:12:18,533   Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3
2020-02-14T11:12:18,549 Given no hashes to check 1 links for project 'jcvi': discarding no candidates
2020-02-14T11:12:18,550 Using version 1.0.3 (newest of versions: 1.0.3)
2020-02-14T11:12:18,555 Collecting jcvi==1.0.3
2020-02-14T11:12:18,558   Created temporary directory: /tmp/pip-unpack-om3nb_lf
2020-02-14T11:12:18,560   Getting credentials from keyring for files.pythonhosted.org
2020-02-14T11:12:18,644   Downloading jcvi-1.0.3.tar.gz (814 kB)
2020-02-14T11:12:19,902   Added jcvi==1.0.3 from https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df to build tracker '/tmp/pip-req-tracker-p4ygu7y_'
2020-02-14T11:12:19,904     Running setup.py (path:/tmp/pip-wheel-w7lauqvr/jcvi/setup.py) egg_info for package jcvi
2020-02-14T11:12:19,905     Running command python setup.py egg_info
2020-02-14T11:12:22,699     running egg_info
2020-02-14T11:12:22,703     creating /tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info
2020-02-14T11:12:22,704     writing /tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/PKG-INFO
2020-02-14T11:12:22,710     writing dependency_links to /tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/dependency_links.txt
2020-02-14T11:12:22,714     writing requirements to /tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/requires.txt
2020-02-14T11:12:22,716     writing top-level names to /tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/top_level.txt
2020-02-14T11:12:22,719     writing manifest file '/tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt'
2020-02-14T11:12:22,758     reading manifest file '/tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt'
2020-02-14T11:12:22,760     reading manifest template 'MANIFEST.in'
2020-02-14T11:12:22,781     writing manifest file '/tmp/pip-wheel-w7lauqvr/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt'
2020-02-14T11:12:22,783     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v1.0.3' to '1.0.3'
2020-02-14T11:12:22,784       normalized_version,
2020-02-14T11:12:22,950   Source in /tmp/pip-wheel-w7lauqvr/jcvi has version 1.0.3, which satisfies requirement jcvi==1.0.3 from https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df
2020-02-14T11:12:22,952   Removed jcvi==1.0.3 from https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df from build tracker '/tmp/pip-req-tracker-p4ygu7y_'
2020-02-14T11:12:22,956 Building wheels for collected packages: jcvi
2020-02-14T11:12:22,963   Created temporary directory: /tmp/pip-wheel-njk5749z
2020-02-14T11:12:22,964   Building wheel for jcvi (setup.py): started
2020-02-14T11:12:22,965   Destination directory: /tmp/pip-wheel-njk5749z
2020-02-14T11:12:22,965   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w7lauqvr/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w7lauqvr/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-njk5749z
2020-02-14T11:12:25,299   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing 'v1.0.3' to '1.0.3'
2020-02-14T11:12:25,300     normalized_version,
2020-02-14T11:12:25,385   running bdist_wheel
2020-02-14T11:12:25,393   running build
2020-02-14T11:12:25,393   running build_py
2020-02-14T11:12:25,402   creating build
2020-02-14T11:12:25,403   creating build/lib.linux-armv7l-3.7
2020-02-14T11:12:25,404   creating build/lib.linux-armv7l-3.7/jcvi
2020-02-14T11:12:25,406   copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi
2020-02-14T11:12:25,409   copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi
2020-02-14T11:12:25,414   creating build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,416   copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,421   copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,425   copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,433   copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,439   copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,446   copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,450   copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,453   copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,457   copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,462   copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,466   copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,472   copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,479   copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,485   copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,489   copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-02-14T11:12:25,493   creating build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,495   copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,499   copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,502   copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,506   copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,514   copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,520   copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,528   copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,532   copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,536   copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,538   copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-02-14T11:12:25,544   creating build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,545   copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,552   copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,556   copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,560   copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,565   copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,571   copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,577   copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,584   copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,590   copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,595   copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-02-14T11:12:25,601   creating build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,604   copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,608   copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,613   copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,618   copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,622   copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,628   copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,637   copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,643   copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,651   copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,656   copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,661   copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,666   copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,671   copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,675   copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,680   copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,683   copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,687   copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,692   copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,696   copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,701   copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,705   copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,709   copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,714   copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,718   copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,725   copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,729   copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,732   copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:25,739   creating build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,742   copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,746   copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,751   copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,756   copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,760   copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,764   copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,768   copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,772   copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,776   copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,781   copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,787   copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,792   copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,798   copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,805   copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,811   copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,816   copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,825   copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,829   copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,834   copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,838   copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,844   copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,852   copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,857   copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,862   copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,869   copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,872   copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,877   copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,880   copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,884   copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:25,892   creating build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,894   copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,899   copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,904   copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,909   copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,913   copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,918   copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,923   copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,927   copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,932   copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,937   copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,943   copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,947   copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,952   copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,955   copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,959   copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,964   copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,970   copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,975   copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,980   copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,985   copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,989   copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:25,993   copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-02-14T11:12:26,000   creating build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,003   copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,008   copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,013   copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,018   copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,023   copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,028   copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,032   copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,037   copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,042   copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,046   copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,051   copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,056   copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,061   copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,065   copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,072   copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,078   copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,083   copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-02-14T11:12:26,092   creating build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,094   copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,100   copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,103   copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,107   copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,110   copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,113   copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,117   copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,120   copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,124   copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,131   copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,134   copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,138   copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-02-14T11:12:26,143   creating build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,145   copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,151   copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,158   copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,164   copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,168   copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,172   copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,175   copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,178   copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,182   copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,185   copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,189   copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,192   copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-02-14T11:12:26,198   creating build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,199   copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,203   copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,206   copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,209   copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,213   copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,216   copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,219   copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,226   copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,232   copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,237   copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,242   copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,248   copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,254   copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,262   copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,266   copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,270   copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,274   copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,278   copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,281   copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,284   copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,289   copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,292   copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,296   copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,300   copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,305   copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,311   copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,318   copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,324   copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-02-14T11:12:26,330   creating build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,333   copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,337   running egg_info
2020-02-14T11:12:26,354   writing jcvi.egg-info/PKG-INFO
2020-02-14T11:12:26,358   writing dependency_links to jcvi.egg-info/dependency_links.txt
2020-02-14T11:12:26,361   writing requirements to jcvi.egg-info/requires.txt
2020-02-14T11:12:26,363   writing top-level names to jcvi.egg-info/top_level.txt
2020-02-14T11:12:26,396   reading manifest file 'jcvi.egg-info/SOURCES.txt'
2020-02-14T11:12:26,410   reading manifest template 'MANIFEST.in'
2020-02-14T11:12:26,438   writing manifest file 'jcvi.egg-info/SOURCES.txt'
2020-02-14T11:12:26,449   copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:26,453   copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:26,457   copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,462   copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,470   copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,476   copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,483   copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,490   copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,495   copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,500   copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,507   copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,516   copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,520   copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,526   copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,530   copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-02-14T11:12:26,571   UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py
2020-02-14T11:12:26,574   set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.3'
2020-02-14T11:12:26,574   running build_ext
2020-02-14T11:12:26,728   cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c
2020-02-14T11:12:28,877   /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-w7lauqvr/jcvi/jcvi/assembly/chic.pyx
2020-02-14T11:12:28,878     tree = Parsing.p_module(s, pxd, full_module_name)
2020-02-14T11:12:31,952   building 'jcvi.assembly.chic' extension
2020-02-14T11:12:31,953   creating build/temp.linux-armv7l-3.7
2020-02-14T11:12:31,953   creating build/temp.linux-armv7l-3.7/jcvi
2020-02-14T11:12:31,955   creating build/temp.linux-armv7l-3.7/jcvi/assembly
2020-02-14T11:12:31,956   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3
2020-02-14T11:12:32,528   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-02-14T11:12:32,529                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-02-14T11:12:32,529                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-02-14T11:12:32,529                    from jcvi/assembly/chic.c:613:
2020-02-14T11:12:32,530   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-02-14T11:12:32,530    #warning "Using deprecated NumPy API, disable it with " \
2020-02-14T11:12:32,530     ^~~~~~~
2020-02-14T11:12:39,505   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so
2020-02-14T11:12:39,710   cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c
2020-02-14T11:12:40,914   building 'jcvi.formats.cblast' extension
2020-02-14T11:12:40,916   creating build/temp.linux-armv7l-3.7/jcvi/formats
2020-02-14T11:12:40,917   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3
2020-02-14T11:12:53,968   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so
2020-02-14T11:12:54,210   installing to build/bdist.linux-armv7l/wheel
2020-02-14T11:12:54,211   running install
2020-02-14T11:12:54,216   running install_lib
2020-02-14T11:12:54,228   creating build/bdist.linux-armv7l
2020-02-14T11:12:54,230   creating build/bdist.linux-armv7l/wheel
2020-02-14T11:12:54,235   creating build/bdist.linux-armv7l/wheel/jcvi
2020-02-14T11:12:54,239   creating build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,241   copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,247   copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,253   copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,263   copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,270   copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,275   copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,279   copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,283   copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,287   copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,291   copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,297   copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,304   copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,310   copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,316   copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,319   copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-02-14T11:12:54,323   creating build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,325   copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,329   copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,332   copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,337   copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,345   copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,351   copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,357   copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,361   copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,365   copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,368   copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-02-14T11:12:54,373   creating build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,375   copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,384   copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,390   copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,396   copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,399   copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,404   copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,407   copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,410   copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,415   copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,420   copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-02-14T11:12:54,427   creating build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,430   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,436   copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,444   copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,450   copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,457   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,460   copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,465   copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,471   copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,475   copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,480   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,485   copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,490   copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,494   copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,499   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,513   copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,518   copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,525   copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,532   copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,539   copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,544   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,549   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,554   copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,558   copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,565   copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,572   copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,579   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,588   copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,595   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,601   copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-02-14T11:12:54,607   creating build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,609   copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,614   copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,618   copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,622   copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,626   copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,631   copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,635   copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,639   copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,644   copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,649   copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,655   copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,659   copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,666   copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,673   copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,679   copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,686   copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,695   copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,699   copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,705   copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,709   copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,716   copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,723   copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,729   copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,735   copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,742   copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,749   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,755   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,784   copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,788   copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,792   copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,795   copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-02-14T11:12:54,801   creating build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,802   copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,808   copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,815   copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,821   copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,826   copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,832   copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,838   copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,843   copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,848   copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,853   copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,857   copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,861   copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,864   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,868   copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,874   copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,880   copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,888   copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,896   copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,902   copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,909   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,912   copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,916   copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-02-14T11:12:54,922   creating build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:54,925   creating build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,928   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,933   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,942   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,946   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,950   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,956   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,961   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,965   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,969   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,975   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,980   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,989   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,993   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:54,996   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-02-14T11:12:55,001   copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,006   copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,011   copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,016   copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,021   copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,027   copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,031   copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,036   copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,040   copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,044   copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,049   copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,054   copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,058   copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,062   copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,066   copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,071   copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,076   copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-02-14T11:12:55,080   creating build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,083   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,088   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,092   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,096   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,100   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,105   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,110   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,114   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,119   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,123   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,152   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,159   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-02-14T11:12:55,165   creating build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,169   copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,176   copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,183   copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,189   copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,194   copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,199   copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,204   copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,208   copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,213   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,217   copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,222   copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,226   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-02-14T11:12:55,229   copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-02-14T11:12:55,235   creating build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,237   copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,242   copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,246   copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,250   copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,254   copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,258   copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,263   copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,269   copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,273   copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,277   copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,282   copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,286   copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,291   copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,298   copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,302   copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,306   copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,311   copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,314   copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,317   copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,320   copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,325   copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,330   copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,336   copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,342   copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,348   copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,352   copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,357   copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,361   copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-02-14T11:12:55,364   copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-02-14T11:12:55,367   running install_egg_info
2020-02-14T11:12:55,392   Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.3-py3.7.egg-info
2020-02-14T11:12:55,423   running install_scripts
2020-02-14T11:12:55,541   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-02-14T11:12:55,552   creating build/bdist.linux-armv7l/wheel/jcvi-1.0.3.dist-info/WHEEL
2020-02-14T11:12:55,557   creating '/tmp/pip-wheel-njk5749z/jcvi-1.0.3-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-02-14T11:12:55,561   adding 'jcvi/__init__.py'
2020-02-14T11:12:55,563   adding 'jcvi/_version.py'
2020-02-14T11:12:55,566   adding 'jcvi/algorithms/__init__.py'
2020-02-14T11:12:55,568   adding 'jcvi/algorithms/__main__.py'
2020-02-14T11:12:55,571   adding 'jcvi/algorithms/ec.py'
2020-02-14T11:12:55,574   adding 'jcvi/algorithms/formula.py'
2020-02-14T11:12:55,578   adding 'jcvi/algorithms/graph.py'
2020-02-14T11:12:55,581   adding 'jcvi/algorithms/lis.py'
2020-02-14T11:12:55,585   adding 'jcvi/algorithms/lpsolve.py'
2020-02-14T11:12:55,588   adding 'jcvi/algorithms/matrix.py'
2020-02-14T11:12:55,591   adding 'jcvi/algorithms/maxsum.py'
2020-02-14T11:12:55,593   adding 'jcvi/algorithms/ml.py'
2020-02-14T11:12:55,596   adding 'jcvi/algorithms/supermap.py'
2020-02-14T11:12:55,599   adding 'jcvi/algorithms/tsp.py'
2020-02-14T11:12:55,602   adding 'jcvi/annotation/__init__.py'
2020-02-14T11:12:55,604   adding 'jcvi/annotation/__main__.py'
2020-02-14T11:12:55,609   adding 'jcvi/annotation/ahrd.py'
2020-02-14T11:12:55,612   adding 'jcvi/annotation/automaton.py'
2020-02-14T11:12:55,615   adding 'jcvi/annotation/depth.py'
2020-02-14T11:12:55,618   adding 'jcvi/annotation/evm.py'
2020-02-14T11:12:55,622   adding 'jcvi/annotation/maker.py'
2020-02-14T11:12:55,626   adding 'jcvi/annotation/pasa.py'
2020-02-14T11:12:55,629   adding 'jcvi/annotation/qc.py'
2020-02-14T11:12:55,638   adding 'jcvi/annotation/reformat.py'
2020-02-14T11:12:55,642   adding 'jcvi/annotation/stats.py'
2020-02-14T11:12:55,645   adding 'jcvi/annotation/train.py'
2020-02-14T11:12:55,648   adding 'jcvi/apps/__init__.py'
2020-02-14T11:12:55,650   adding 'jcvi/apps/__main__.py'
2020-02-14T11:12:55,654   adding 'jcvi/apps/align.py'
2020-02-14T11:12:55,666   adding 'jcvi/apps/base.py'
2020-02-14T11:12:55,670   adding 'jcvi/apps/biomart.py'
2020-02-14T11:12:55,673   adding 'jcvi/apps/blastplus.py'
2020-02-14T11:12:55,676   adding 'jcvi/apps/bowtie.py'
2020-02-14T11:12:55,679   adding 'jcvi/apps/bwa.py'
2020-02-14T11:12:55,682   adding 'jcvi/apps/cap3.py'
2020-02-14T11:12:55,684   adding 'jcvi/apps/cdhit.py'
2020-02-14T11:12:55,687   adding 'jcvi/apps/console.py'
2020-02-14T11:12:55,690   adding 'jcvi/apps/emboss.py'
2020-02-14T11:12:55,694   adding 'jcvi/apps/fetch.py'
2020-02-14T11:12:55,699   adding 'jcvi/apps/gbsubmit.py'
2020-02-14T11:12:55,702   adding 'jcvi/apps/gmap.py'
2020-02-14T11:12:55,706   adding 'jcvi/apps/grid.py'
2020-02-14T11:12:55,713   adding 'jcvi/apps/ks.py'
2020-02-14T11:12:55,716   adding 'jcvi/apps/lastz.py'
2020-02-14T11:12:55,719   adding 'jcvi/apps/mask.py'
2020-02-14T11:12:55,726   adding 'jcvi/apps/phylo.py'
2020-02-14T11:12:55,728   adding 'jcvi/apps/r.py'
2020-02-14T11:12:55,731   adding 'jcvi/apps/restriction.py'
2020-02-14T11:12:55,733   adding 'jcvi/apps/script.py'
2020-02-14T11:12:55,736   adding 'jcvi/apps/softlink.py'
2020-02-14T11:12:55,738   adding 'jcvi/apps/tesseract.py'
2020-02-14T11:12:55,745   adding 'jcvi/apps/uclust.py'
2020-02-14T11:12:55,748   adding 'jcvi/apps/uniprot.py'
2020-02-14T11:12:55,751   adding 'jcvi/apps/vecscreen.py'
2020-02-14T11:12:55,755   adding 'jcvi/assembly/__init__.py'
2020-02-14T11:12:55,757   adding 'jcvi/assembly/__main__.py'
2020-02-14T11:12:55,770   adding 'jcvi/assembly/allmaps.py'
2020-02-14T11:12:55,775   adding 'jcvi/assembly/allpaths.py'
2020-02-14T11:12:55,778   adding 'jcvi/assembly/amos.py'
2020-02-14T11:12:55,781   adding 'jcvi/assembly/automaton.py'
2020-02-14T11:12:55,784   adding 'jcvi/assembly/bambus.py'
2020-02-14T11:12:55,787   adding 'jcvi/assembly/base.py'
2020-02-14T11:12:55,794   adding 'jcvi/assembly/ca.py'
2020-02-14T11:12:55,865   adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so'
2020-02-14T11:12:55,870   adding 'jcvi/assembly/chic.pyx'
2020-02-14T11:12:55,873   adding 'jcvi/assembly/coverage.py'
2020-02-14T11:12:55,876   adding 'jcvi/assembly/gaps.py'
2020-02-14T11:12:55,881   adding 'jcvi/assembly/geneticmap.py'
2020-02-14T11:12:55,888   adding 'jcvi/assembly/goldenpath.py'
2020-02-14T11:12:55,900   adding 'jcvi/assembly/hic.py'
2020-02-14T11:12:55,906   adding 'jcvi/assembly/kmer.py'
2020-02-14T11:12:55,909   adding 'jcvi/assembly/meraculous.py'
2020-02-14T11:12:55,913   adding 'jcvi/assembly/opticalmap.py'
2020-02-14T11:12:55,919   adding 'jcvi/assembly/patch.py'
2020-02-14T11:12:55,923   adding 'jcvi/assembly/pbjelly.py'
2020-02-14T11:12:55,927   adding 'jcvi/assembly/postprocess.py'
2020-02-14T11:12:55,932   adding 'jcvi/assembly/preprocess.py'
2020-02-14T11:12:55,935   adding 'jcvi/assembly/sim.py'
2020-02-14T11:12:55,938   adding 'jcvi/assembly/soap.py'
2020-02-14T11:12:55,941   adding 'jcvi/assembly/sspace.py'
2020-02-14T11:12:55,945   adding 'jcvi/assembly/syntenypath.py'
2020-02-14T11:12:55,948   adding 'jcvi/assembly/trinity.py'
2020-02-14T11:12:55,951   adding 'jcvi/assembly/unitig.py'
2020-02-14T11:12:55,955   adding 'jcvi/compara/__init__.py'
2020-02-14T11:12:55,956   adding 'jcvi/compara/__main__.py'
2020-02-14T11:12:55,959   adding 'jcvi/compara/blastfilter.py'
2020-02-14T11:12:55,965   adding 'jcvi/compara/catalog.py'
2020-02-14T11:12:55,971   adding 'jcvi/compara/fractionation.py'
2020-02-14T11:12:55,974   adding 'jcvi/compara/pad.py'
2020-02-14T11:12:55,978   adding 'jcvi/compara/quota.py'
2020-02-14T11:12:55,981   adding 'jcvi/compara/reconstruct.py'
2020-02-14T11:12:55,985   adding 'jcvi/compara/synfind.py'
2020-02-14T11:12:55,996   adding 'jcvi/compara/synteny.py'
2020-02-14T11:12:56,001   adding 'jcvi/formats/__init__.py'
2020-02-14T11:12:56,003   adding 'jcvi/formats/__main__.py'
2020-02-14T11:12:56,005   adding 'jcvi/formats/ace.py'
2020-02-14T11:12:56,016   adding 'jcvi/formats/agp.py'
2020-02-14T11:12:56,024   adding 'jcvi/formats/base.py'
2020-02-14T11:12:56,038   adding 'jcvi/formats/bed.py'
2020-02-14T11:12:56,046   adding 'jcvi/formats/blast.py'
2020-02-14T11:12:56,049   adding 'jcvi/formats/btab.py'
2020-02-14T11:12:56,200   adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so'
2020-02-14T11:12:56,208   adding 'jcvi/formats/cblast.pyx'
2020-02-14T11:12:56,210   adding 'jcvi/formats/cdt.py'
2020-02-14T11:12:56,213   adding 'jcvi/formats/chain.py'
2020-02-14T11:12:56,216   adding 'jcvi/formats/contig.py'
2020-02-14T11:12:56,220   adding 'jcvi/formats/coords.py'
2020-02-14T11:12:56,223   adding 'jcvi/formats/excel.py'
2020-02-14T11:12:56,237   adding 'jcvi/formats/fasta.py'
2020-02-14T11:12:56,244   adding 'jcvi/formats/fastq.py'
2020-02-14T11:12:56,246   adding 'jcvi/formats/fpc.py'
2020-02-14T11:12:56,250   adding 'jcvi/formats/genbank.py'
2020-02-14T11:12:56,271   adding 'jcvi/formats/gff.py'
2020-02-14T11:12:56,274   adding 'jcvi/formats/html.py'
2020-02-14T11:12:56,277   adding 'jcvi/formats/maf.py'
2020-02-14T11:12:56,280   adding 'jcvi/formats/obo.py'
2020-02-14T11:12:56,283   adding 'jcvi/formats/pdf.py'
2020-02-14T11:12:56,285   adding 'jcvi/formats/posmap.py'
2020-02-14T11:12:56,289   adding 'jcvi/formats/psl.py'
2020-02-14T11:12:56,291   adding 'jcvi/formats/pyblast.py'
2020-02-14T11:12:56,297   adding 'jcvi/formats/sam.py'
2020-02-14T11:12:56,300   adding 'jcvi/formats/sbt.py'
2020-02-14T11:12:56,303   adding 'jcvi/formats/sizes.py'
2020-02-14T11:12:56,308   adding 'jcvi/formats/vcf.py'
2020-02-14T11:12:56,312   adding 'jcvi/graphics/__init__.py'
2020-02-14T11:12:56,314   adding 'jcvi/graphics/__main__.py'
2020-02-14T11:12:56,318   adding 'jcvi/graphics/align.py'
2020-02-14T11:12:56,322   adding 'jcvi/graphics/assembly.py'
2020-02-14T11:12:56,326   adding 'jcvi/graphics/base.py'
2020-02-14T11:12:56,329   adding 'jcvi/graphics/blastplot.py'
2020-02-14T11:12:56,334   adding 'jcvi/graphics/chromosome.py'
2020-02-14T11:12:56,337   adding 'jcvi/graphics/coverage.py'
2020-02-14T11:12:56,341   adding 'jcvi/graphics/dotplot.py'
2020-02-14T11:12:56,345   adding 'jcvi/graphics/glyph.py'
2020-02-14T11:12:56,351   adding 'jcvi/graphics/grabseeds.py'
2020-02-14T11:12:56,354   adding 'jcvi/graphics/graph.py'
2020-02-14T11:12:56,356   adding 'jcvi/graphics/heatmap.py'
2020-02-14T11:12:56,359   adding 'jcvi/graphics/histogram.py'
2020-02-14T11:12:56,363   adding 'jcvi/graphics/karyotype.py'
2020-02-14T11:12:56,367   adding 'jcvi/graphics/landscape.py'
2020-02-14T11:12:56,370   adding 'jcvi/graphics/logo.py'
2020-02-14T11:12:56,372   adding 'jcvi/graphics/mummerplot.py'
2020-02-14T11:12:56,376   adding 'jcvi/graphics/synteny.py'
2020-02-14T11:12:56,380   adding 'jcvi/graphics/tree.py'
2020-02-14T11:12:56,383   adding 'jcvi/graphics/wheel.py'
2020-02-14T11:12:56,385   adding 'jcvi/graphics/whisker.py'
2020-02-14T11:12:56,388   adding 'jcvi/projects/__init__.py'
2020-02-14T11:12:56,390   adding 'jcvi/projects/__main__.py'
2020-02-14T11:12:56,394   adding 'jcvi/projects/age.py'
2020-02-14T11:12:56,397   adding 'jcvi/projects/alfalfa.py'
2020-02-14T11:12:56,401   adding 'jcvi/projects/allmaps.py'
2020-02-14T11:12:56,404   adding 'jcvi/projects/bites.py'
2020-02-14T11:12:56,406   adding 'jcvi/projects/heterosis.py'
2020-02-14T11:12:56,410   adding 'jcvi/projects/ies.py'
2020-02-14T11:12:56,414   adding 'jcvi/projects/misc.py'
2020-02-14T11:12:56,422   adding 'jcvi/projects/napus.py'
2020-02-14T11:12:56,426   adding 'jcvi/projects/pineapple.py'
2020-02-14T11:12:56,428   adding 'jcvi/projects/pistachio.py'
2020-02-14T11:12:56,440   adding 'jcvi/projects/str.py'
2020-02-14T11:12:56,445   adding 'jcvi/projects/synfind.py'
2020-02-14T11:12:56,450   adding 'jcvi/projects/tgbs.py'
2020-02-14T11:12:56,454   adding 'jcvi/utils/__init__.py'
2020-02-14T11:12:56,456   adding 'jcvi/utils/__main__.py'
2020-02-14T11:12:56,461   adding 'jcvi/utils/aws.py'
2020-02-14T11:12:56,464   adding 'jcvi/utils/brewer2mpl.py'
2020-02-14T11:12:56,468   adding 'jcvi/utils/cbook.py'
2020-02-14T11:12:56,471   adding 'jcvi/utils/counter.py'
2020-02-14T11:12:56,474   adding 'jcvi/utils/db.py'
2020-02-14T11:12:56,477   adding 'jcvi/utils/ez_setup.py'
2020-02-14T11:12:56,480   adding 'jcvi/utils/grouper.py'
2020-02-14T11:12:56,483   adding 'jcvi/utils/iter.py'
2020-02-14T11:12:56,486   adding 'jcvi/utils/natsort.py'
2020-02-14T11:12:56,489   adding 'jcvi/utils/orderedcollections.py'
2020-02-14T11:12:56,494   adding 'jcvi/utils/progressbar.py'
2020-02-14T11:12:56,498   adding 'jcvi/utils/range.py'
2020-02-14T11:12:56,501   adding 'jcvi/utils/table.py'
2020-02-14T11:12:56,504   adding 'jcvi/utils/taxonomy.py'
2020-02-14T11:12:56,509   adding 'jcvi/utils/webcolors.py'
2020-02-14T11:12:56,515   adding 'jcvi/utils/data/Airswing.ttf'
2020-02-14T11:12:56,538   adding 'jcvi/utils/data/Collegia.ttf'
2020-02-14T11:12:56,545   adding 'jcvi/utils/data/HookedUp.ttf'
2020-02-14T11:12:56,553   adding 'jcvi/utils/data/Humor-Sans.ttf'
2020-02-14T11:12:56,559   adding 'jcvi/utils/data/TREDs.meta.csv'
2020-02-14T11:12:56,561   adding 'jcvi/utils/data/__init__.py'
2020-02-14T11:12:56,563   adding 'jcvi/utils/data/adapters.fasta'
2020-02-14T11:12:56,566   adding 'jcvi/utils/data/blosum80.mat'
2020-02-14T11:12:56,569   adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc'
2020-02-14T11:12:56,577   adding 'jcvi/utils/data/colorbrewer_all_schemes.json'
2020-02-14T11:12:56,580   adding 'jcvi/utils/data/colorchecker.txt'
2020-02-14T11:12:56,589   adding 'jcvi/utils/data/hg38.band.txt'
2020-02-14T11:12:56,593   adding 'jcvi/utils/data/hg38.chrom.sizes'
2020-02-14T11:12:56,595   adding 'jcvi/utils/data/instance.json'
2020-02-14T11:12:56,598   adding 'jcvi/variation/__init__.py'
2020-02-14T11:12:56,600   adding 'jcvi/variation/__main__.py'
2020-02-14T11:12:56,608   adding 'jcvi/variation/cnv.py'
2020-02-14T11:12:56,611   adding 'jcvi/variation/deconvolute.py'
2020-02-14T11:12:56,614   adding 'jcvi/variation/delly.py'
2020-02-14T11:12:56,617   adding 'jcvi/variation/impute.py'
2020-02-14T11:12:56,620   adding 'jcvi/variation/phase.py'
2020-02-14T11:12:56,623   adding 'jcvi/variation/snp.py'
2020-02-14T11:12:56,633   adding 'jcvi/variation/str.py'
2020-02-14T11:12:56,636   adding 'jcvi/variation/tassel.py'
2020-02-14T11:12:56,640   adding 'jcvi-1.0.3.dist-info/LICENSE'
2020-02-14T11:12:56,642   adding 'jcvi-1.0.3.dist-info/METADATA'
2020-02-14T11:12:56,644   adding 'jcvi-1.0.3.dist-info/WHEEL'
2020-02-14T11:12:56,646   adding 'jcvi-1.0.3.dist-info/top_level.txt'
2020-02-14T11:12:56,649   adding 'jcvi-1.0.3.dist-info/RECORD'
2020-02-14T11:12:56,702   removing build/bdist.linux-armv7l/wheel
2020-02-14T11:12:57,271   Building wheel for jcvi (setup.py): finished with status 'done'
2020-02-14T11:12:57,291   Created wheel for jcvi: filename=jcvi-1.0.3-cp37-cp37m-linux_armv7l.whl size=1191668 sha256=f9291448691d2196d767c32b64c993c337b82c6c5b926885b2758b141f274555
2020-02-14T11:12:57,291   Stored in directory: /tmp/pip-ephem-wheel-cache-ivtd6yqp/wheels/a0/e3/9c/731ea38217638b36f455ab5a72c3e4798f921a1ff6c60b1441
2020-02-14T11:12:57,294 Successfully built jcvi
2020-02-14T11:12:57,631 Cleaning up...
2020-02-14T11:12:57,632   Removing source in /tmp/pip-wheel-w7lauqvr/jcvi
2020-02-14T11:12:57,887 Removed build tracker: '/tmp/pip-req-tracker-p4ygu7y_'