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https://files.pythonhosted.org/packages/88/52/f10b6a2628d76225b50051512dfc0e88e811f97e0a376c929094d09885d0/cidc_schemas-0.16.4.tar.gz#sha256=edb1a25884ffdcfa03c64623da4a9afc8f5a787eddff27444f431541538e2c51 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.4 2020-02-25T19:38:47,108 Found link https://files.pythonhosted.org/packages/08/bb/840fe9a5c1f49a16f9a864b2dc8e4d50e8d7e7a80b0e9ac51482d4c9feff/cidc_schemas-0.16.5.tar.gz#sha256=bc0ef8a0bc0de4c3cf7eb7dc75f57fa4e2378b34e9103e59c2d1120d3683442b (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.5 2020-02-25T19:38:47,108 Found link https://files.pythonhosted.org/packages/7c/86/dfa64a2df9c0ee25842be57f99efac5e601079751cf88748643b684e345a/cidc_schemas-0.16.6.tar.gz#sha256=7b3c15c3c9c37feada4da1ec38f7c4b20b286ac914456ec7a82db919341dc4ec (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.6 2020-02-25T19:38:47,109 Found link https://files.pythonhosted.org/packages/7c/c6/a12d40b629ce4ec0770fbfad3e65457efe611cdfc320e236e912815e6f15/cidc_schemas-0.16.7.tar.gz#sha256=39d4975cf0791f30ae0173d9b20346881f4262870cc381b8daa0eaabf1ae03cc (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.7 2020-02-25T19:38:47,142 Given no hashes to check 1 links for project 'cidc-schemas': discarding no candidates 2020-02-25T19:38:47,144 Using version 0.16.7 (newest of versions: 0.16.7) 2020-02-25T19:38:47,149 Collecting cidc-schemas==0.16.7 2020-02-25T19:38:47,151 Created temporary directory: /tmp/pip-unpack-keglzx4j 2020-02-25T19:38:47,154 Getting credentials from keyring for files.pythonhosted.org 2020-02-25T19:38:47,505 Downloading cidc_schemas-0.16.7.tar.gz (188 kB) 2020-02-25T19:38:48,227 Added cidc-schemas==0.16.7 from https://files.pythonhosted.org/packages/7c/c6/a12d40b629ce4ec0770fbfad3e65457efe611cdfc320e236e912815e6f15/cidc_schemas-0.16.7.tar.gz#sha256=39d4975cf0791f30ae0173d9b20346881f4262870cc381b8daa0eaabf1ae03cc to build tracker '/tmp/pip-req-tracker-0nzf6cmz' 2020-02-25T19:38:48,229 Running setup.py (path:/tmp/pip-wheel-tzqbhmjl/cidc-schemas/setup.py) egg_info for package cidc-schemas 2020-02-25T19:38:48,230 Running command python setup.py egg_info 2020-02-25T19:38:49,869 running egg_info 2020-02-25T19:38:49,872 creating /tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info 2020-02-25T19:38:49,874 writing /tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/PKG-INFO 2020-02-25T19:38:49,879 writing dependency_links to /tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/dependency_links.txt 2020-02-25T19:38:49,882 writing entry points to /tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/entry_points.txt 2020-02-25T19:38:49,884 writing requirements to /tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/requires.txt 2020-02-25T19:38:49,886 writing top-level names to /tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/top_level.txt 2020-02-25T19:38:49,889 writing manifest file '/tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/SOURCES.txt' 2020-02-25T19:38:50,144 reading manifest file '/tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/SOURCES.txt' 2020-02-25T19:38:50,147 reading manifest template 'MANIFEST.in' 2020-02-25T19:38:50,229 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-02-25T19:38:50,231 warning: no previously-included files matching '*.py[co]' found under directory '*' 2020-02-25T19:38:50,232 warning: no files found matching '*.rst' under directory 'docs' 2020-02-25T19:38:50,233 warning: no files found matching 'conf.py' under directory 'docs' 2020-02-25T19:38:50,233 warning: no files found matching 'Makefile' under directory 'docs' 2020-02-25T19:38:50,234 warning: no files found matching 'make.bat' under directory 'docs' 2020-02-25T19:38:50,234 warning: no files found matching '*.jpg' under directory 'docs' 2020-02-25T19:38:50,234 warning: no files found matching '*.png' under directory 'docs' 2020-02-25T19:38:50,235 warning: no files found matching '*.gif' under directory 'docs' 2020-02-25T19:38:50,246 writing manifest file '/tmp/pip-wheel-tzqbhmjl/cidc-schemas/pip-egg-info/cidc_schemas.egg-info/SOURCES.txt' 2020-02-25T19:38:50,357 Source in /tmp/pip-wheel-tzqbhmjl/cidc-schemas has version 0.16.7, which satisfies requirement cidc-schemas==0.16.7 from https://files.pythonhosted.org/packages/7c/c6/a12d40b629ce4ec0770fbfad3e65457efe611cdfc320e236e912815e6f15/cidc_schemas-0.16.7.tar.gz#sha256=39d4975cf0791f30ae0173d9b20346881f4262870cc381b8daa0eaabf1ae03cc 2020-02-25T19:38:50,359 Removed cidc-schemas==0.16.7 from https://files.pythonhosted.org/packages/7c/c6/a12d40b629ce4ec0770fbfad3e65457efe611cdfc320e236e912815e6f15/cidc_schemas-0.16.7.tar.gz#sha256=39d4975cf0791f30ae0173d9b20346881f4262870cc381b8daa0eaabf1ae03cc from build tracker '/tmp/pip-req-tracker-0nzf6cmz' 2020-02-25T19:38:50,362 Building wheels for collected packages: cidc-schemas 2020-02-25T19:38:50,369 Created temporary directory: /tmp/pip-wheel-esosclc4 2020-02-25T19:38:50,370 Building wheel for cidc-schemas (setup.py): started 2020-02-25T19:38:50,370 Destination directory: /tmp/pip-wheel-esosclc4 2020-02-25T19:38:50,371 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-tzqbhmjl/cidc-schemas/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-tzqbhmjl/cidc-schemas/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-esosclc4 2020-02-25T19:38:51,997 running bdist_wheel 2020-02-25T19:38:52,008 running build 2020-02-25T19:38:52,009 running build_py 2020-02-25T19:38:52,250 creating build 2020-02-25T19:38:52,250 creating build/lib 2020-02-25T19:38:52,252 creating build/lib/cidc_schemas 2020-02-25T19:38:52,253 copying cidc_schemas/util.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,257 copying cidc_schemas/template.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,261 copying cidc_schemas/unprism.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,264 copying cidc_schemas/migrations.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,268 copying cidc_schemas/cli.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,271 copying cidc_schemas/json_validation.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,275 copying cidc_schemas/constants.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,278 copying cidc_schemas/prism.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,284 copying cidc_schemas/template_reader.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,287 copying cidc_schemas/__init__.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,290 copying cidc_schemas/template_writer.py -> build/lib/cidc_schemas 2020-02-25T19:38:52,293 running egg_info 2020-02-25T19:38:52,315 writing cidc_schemas.egg-info/PKG-INFO 2020-02-25T19:38:52,318 writing dependency_links to cidc_schemas.egg-info/dependency_links.txt 2020-02-25T19:38:52,321 writing entry points to cidc_schemas.egg-info/entry_points.txt 2020-02-25T19:38:52,323 writing requirements to cidc_schemas.egg-info/requires.txt 2020-02-25T19:38:52,325 writing top-level names to cidc_schemas.egg-info/top_level.txt 2020-02-25T19:38:52,333 reading manifest file 'cidc_schemas.egg-info/SOURCES.txt' 2020-02-25T19:38:52,342 reading manifest template 'MANIFEST.in' 2020-02-25T19:38:52,394 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-02-25T19:38:52,399 warning: no previously-included files matching '*.py[co]' found under directory '*' 2020-02-25T19:38:52,400 warning: no files found matching '*.rst' under directory 'docs' 2020-02-25T19:38:52,401 warning: no files found matching 'conf.py' under directory 'docs' 2020-02-25T19:38:52,402 warning: no files found matching 'Makefile' under directory 'docs' 2020-02-25T19:38:52,403 warning: no files found matching 'make.bat' under directory 'docs' 2020-02-25T19:38:52,403 warning: no files found matching '*.jpg' under directory 'docs' 2020-02-25T19:38:52,404 warning: no files found matching '*.png' under directory 'docs' 2020-02-25T19:38:52,405 warning: no files found matching '*.gif' under directory 'docs' 2020-02-25T19:38:52,423 writing manifest file 'cidc_schemas.egg-info/SOURCES.txt' 2020-02-25T19:38:52,452 creating build/lib/cidc_schemas/metaschema 2020-02-25T19:38:52,454 copying cidc_schemas/metaschema/strict_meta_schema.json -> build/lib/cidc_schemas/metaschema 2020-02-25T19:38:52,458 creating build/lib/cidc_schemas/pipeline_configs 2020-02-25T19:38:52,459 copying cidc_schemas/pipeline_configs/rnaseq_analysis_config.yaml.j2 -> build/lib/cidc_schemas/pipeline_configs 2020-02-25T19:38:52,463 copying cidc_schemas/pipeline_configs/wes_analysis_config.yaml.j2 -> build/lib/cidc_schemas/pipeline_configs 2020-02-25T19:38:52,466 creating build/lib/cidc_schemas/schemas 2020-02-25T19:38:52,468 copying cidc_schemas/schemas/aliquot.json -> build/lib/cidc_schemas/schemas 2020-02-25T19:38:52,471 copying cidc_schemas/schemas/clinical_trial.json -> build/lib/cidc_schemas/schemas 2020-02-25T19:38:52,475 copying cidc_schemas/schemas/participant.json -> build/lib/cidc_schemas/schemas 2020-02-25T19:38:52,479 copying cidc_schemas/schemas/sample.json -> build/lib/cidc_schemas/schemas 2020-02-25T19:38:52,483 copying cidc_schemas/schemas/shipping_core.json -> build/lib/cidc_schemas/schemas 2020-02-25T19:38:52,486 creating build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,488 copying cidc_schemas/schemas/artifacts/artifact_bam.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,491 copying cidc_schemas/schemas/artifacts/artifact_bam_bai.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,495 copying cidc_schemas/schemas/artifacts/artifact_binary.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,498 copying cidc_schemas/schemas/artifacts/artifact_core.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,501 copying cidc_schemas/schemas/artifacts/artifact_csv.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,505 copying cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,508 copying cidc_schemas/schemas/artifacts/artifact_fastq_gz.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,512 copying cidc_schemas/schemas/artifacts/artifact_fcs.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,515 copying cidc_schemas/schemas/artifacts/artifact_gz.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,519 copying cidc_schemas/schemas/artifacts/artifact_image.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,522 copying cidc_schemas/schemas/artifacts/artifact_json.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,526 copying cidc_schemas/schemas/artifacts/artifact_maf.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,529 copying cidc_schemas/schemas/artifacts/artifact_npx.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,532 copying cidc_schemas/schemas/artifacts/artifact_tbi.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,535 copying cidc_schemas/schemas/artifacts/artifact_text.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,539 copying cidc_schemas/schemas/artifacts/artifact_tsv.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,542 copying cidc_schemas/schemas/artifacts/artifact_vcf.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,546 copying cidc_schemas/schemas/artifacts/artifact_vcf_gz.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,549 copying cidc_schemas/schemas/artifacts/artifact_xlsx.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,552 copying cidc_schemas/schemas/artifacts/artifact_zip.json -> build/lib/cidc_schemas/schemas/artifacts 2020-02-25T19:38:52,556 creating build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,557 copying cidc_schemas/schemas/assays/cytof_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,561 copying cidc_schemas/schemas/assays/elisa_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,565 copying cidc_schemas/schemas/assays/ihc_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,568 copying cidc_schemas/schemas/assays/micsss_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,572 copying cidc_schemas/schemas/assays/mif_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,575 copying cidc_schemas/schemas/assays/olink_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,579 copying cidc_schemas/schemas/assays/rna_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,582 copying cidc_schemas/schemas/assays/wes_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-02-25T19:38:52,586 creating build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,587 copying cidc_schemas/schemas/assays/components/antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,591 copying cidc_schemas/schemas/assays/components/assay_core.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,594 copying cidc_schemas/schemas/assays/components/available_assays.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,598 copying cidc_schemas/schemas/assays/components/available_ngs_analyses.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,601 copying cidc_schemas/schemas/assays/components/composite_image.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,605 copying cidc_schemas/schemas/assays/components/fastq_pair_or_bam.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,608 copying cidc_schemas/schemas/assays/components/image.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,612 copying cidc_schemas/schemas/assays/components/imaging_data.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,616 copying cidc_schemas/schemas/assays/components/local_file.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,619 copying cidc_schemas/schemas/assays/components/mapping.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,623 copying cidc_schemas/schemas/assays/components/micsss_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,626 copying cidc_schemas/schemas/assays/components/mif_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,630 copying cidc_schemas/schemas/assays/components/multiple_local_files.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,633 copying cidc_schemas/schemas/assays/components/ngs_assay_core.json -> build/lib/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,636 creating build/lib/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,638 copying cidc_schemas/schemas/assays/components/cytof/cytof_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,641 copying cidc_schemas/schemas/assays/components/cytof/cytof_antibody.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,645 copying cidc_schemas/schemas/assays/components/cytof/cytof_entry.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,649 copying cidc_schemas/schemas/assays/components/cytof/cytof_input.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,652 creating build/lib/cidc_schemas/schemas/assays/components/elisa 2020-02-25T19:38:52,654 copying cidc_schemas/schemas/assays/components/elisa/elisa_antibody.json -> build/lib/cidc_schemas/schemas/assays/components/elisa 2020-02-25T19:38:52,657 creating build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,659 copying cidc_schemas/schemas/assays/components/imaging/ihc_antibody.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,663 copying cidc_schemas/schemas/assays/components/imaging/ihc_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,666 copying cidc_schemas/schemas/assays/components/imaging/ihc_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,669 copying cidc_schemas/schemas/assays/components/imaging/micsss_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,673 copying cidc_schemas/schemas/assays/components/imaging/micsss_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,676 copying cidc_schemas/schemas/assays/components/imaging/mif_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,680 copying cidc_schemas/schemas/assays/components/imaging/mif_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:52,683 creating build/lib/cidc_schemas/schemas/assays/components/ngs 2020-02-25T19:38:52,684 copying cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2020-02-25T19:38:52,688 creating build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-02-25T19:38:52,690 copying cidc_schemas/schemas/assays/components/ngs/rna/rna_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-02-25T19:38:52,693 creating build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,695 copying cidc_schemas/schemas/assays/components/ngs/wes/alignment.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,699 copying cidc_schemas/schemas/assays/components/ngs/wes/clonality.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,702 copying cidc_schemas/schemas/assays/components/ngs/wes/copynumber.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,705 copying cidc_schemas/schemas/assays/components/ngs/wes/corealignments.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,709 copying cidc_schemas/schemas/assays/components/ngs/wes/coverage_metrics.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,713 copying cidc_schemas/schemas/assays/components/ngs/wes/germline.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,716 copying cidc_schemas/schemas/assays/components/ngs/wes/neoantigen.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,719 copying cidc_schemas/schemas/assays/components/ngs/wes/optitype.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,723 copying cidc_schemas/schemas/assays/components/ngs/wes/purity.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,727 copying cidc_schemas/schemas/assays/components/ngs/wes/report.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,730 copying cidc_schemas/schemas/assays/components/ngs/wes/somatic.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,734 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,737 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,741 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_pair_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,745 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_sample_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:52,748 creating build/lib/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:52,750 copying cidc_schemas/schemas/assays/components/olink/olink_combined.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:52,753 copying cidc_schemas/schemas/assays/components/olink/olink_entry.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:52,757 copying cidc_schemas/schemas/assays/components/olink/olink_input.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:52,760 creating build/lib/cidc_schemas/schemas/templates 2020-02-25T19:38:52,761 creating build/lib/cidc_schemas/schemas/templates/analyses 2020-02-25T19:38:52,763 copying cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json -> build/lib/cidc_schemas/schemas/templates/analyses 2020-02-25T19:38:52,767 copying cidc_schemas/schemas/templates/analyses/wes_analysis_template.json -> build/lib/cidc_schemas/schemas/templates/analyses 2020-02-25T19:38:52,772 creating build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,774 copying cidc_schemas/schemas/templates/manifests/h_and_e_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,778 copying cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,782 copying cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,786 copying cidc_schemas/schemas/templates/manifests/pbmc_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,791 copying cidc_schemas/schemas/templates/manifests/plasma_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,795 copying cidc_schemas/schemas/templates/manifests/tissue_slide_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,800 copying cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,803 copying cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,807 creating build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,809 copying cidc_schemas/schemas/templates/metadata/cytof_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,813 copying cidc_schemas/schemas/templates/metadata/elisa_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,816 copying cidc_schemas/schemas/templates/metadata/ihc_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,821 copying cidc_schemas/schemas/templates/metadata/olink_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,824 copying cidc_schemas/schemas/templates/metadata/rna_bam_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,828 copying cidc_schemas/schemas/templates/metadata/rna_fastq_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,832 copying cidc_schemas/schemas/templates/metadata/wes_bam_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,835 copying cidc_schemas/schemas/templates/metadata/wes_fastq_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,846 installing to build/bdist.linux-armv7l/wheel 2020-02-25T19:38:52,847 running install 2020-02-25T19:38:52,848 running install_lib 2020-02-25T19:38:52,854 creating build/bdist.linux-armv7l 2020-02-25T19:38:52,855 creating build/bdist.linux-armv7l/wheel 2020-02-25T19:38:52,858 creating build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:52,860 copying build/lib/cidc_schemas/util.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:52,865 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-02-25T19:38:52,866 copying build/lib/cidc_schemas/schemas/clinical_trial.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-02-25T19:38:52,870 copying build/lib/cidc_schemas/schemas/sample.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-02-25T19:38:52,875 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates 2020-02-25T19:38:52,878 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-02-25T19:38:52,880 copying build/lib/cidc_schemas/schemas/templates/analyses/wes_analysis_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-02-25T19:38:52,885 copying build/lib/cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-02-25T19:38:52,889 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,891 copying build/lib/cidc_schemas/schemas/templates/manifests/h_and_e_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,895 copying build/lib/cidc_schemas/schemas/templates/manifests/plasma_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,900 copying build/lib/cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,904 copying build/lib/cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,907 copying build/lib/cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,911 copying build/lib/cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,915 copying build/lib/cidc_schemas/schemas/templates/manifests/tissue_slide_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,918 copying build/lib/cidc_schemas/schemas/templates/manifests/pbmc_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-02-25T19:38:52,924 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,925 copying build/lib/cidc_schemas/schemas/templates/metadata/wes_bam_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,929 copying build/lib/cidc_schemas/schemas/templates/metadata/ihc_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,933 copying build/lib/cidc_schemas/schemas/templates/metadata/rna_bam_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,936 copying build/lib/cidc_schemas/schemas/templates/metadata/olink_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,940 copying build/lib/cidc_schemas/schemas/templates/metadata/rna_fastq_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,944 copying build/lib/cidc_schemas/schemas/templates/metadata/cytof_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,947 copying build/lib/cidc_schemas/schemas/templates/metadata/elisa_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,950 copying build/lib/cidc_schemas/schemas/templates/metadata/wes_fastq_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-02-25T19:38:52,954 copying build/lib/cidc_schemas/schemas/shipping_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-02-25T19:38:52,959 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:52,961 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,963 copying build/lib/cidc_schemas/schemas/assays/components/local_file.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,966 copying build/lib/cidc_schemas/schemas/assays/components/mapping.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,969 copying build/lib/cidc_schemas/schemas/assays/components/assay_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:52,973 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/elisa 2020-02-25T19:38:52,975 copying build/lib/cidc_schemas/schemas/assays/components/elisa/elisa_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/elisa 2020-02-25T19:38:52,979 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,981 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,985 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,988 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,991 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-02-25T19:38:52,996 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:52,997 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:53,000 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_combined.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:53,004 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-02-25T19:38:53,008 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2020-02-25T19:38:53,009 copying build/lib/cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2020-02-25T19:38:53,014 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-02-25T19:38:53,015 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/rna_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-02-25T19:38:53,020 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,022 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_sample_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,025 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/neoantigen.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,029 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/report.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,032 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/corealignments.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,035 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/clonality.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,039 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/germline.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,042 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,045 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,049 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/purity.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,052 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/somatic.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,056 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_pair_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,059 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/alignment.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,063 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/copynumber.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,066 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/coverage_metrics.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,069 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/optitype.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-02-25T19:38:53,072 copying build/lib/cidc_schemas/schemas/assays/components/composite_image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,075 copying build/lib/cidc_schemas/schemas/assays/components/multiple_local_files.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,078 copying build/lib/cidc_schemas/schemas/assays/components/image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,082 copying build/lib/cidc_schemas/schemas/assays/components/imaging_data.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,085 copying build/lib/cidc_schemas/schemas/assays/components/mif_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,088 copying build/lib/cidc_schemas/schemas/assays/components/ngs_assay_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,092 copying build/lib/cidc_schemas/schemas/assays/components/antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,095 copying build/lib/cidc_schemas/schemas/assays/components/micsss_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,098 copying build/lib/cidc_schemas/schemas/assays/components/available_assays.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,103 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,104 copying build/lib/cidc_schemas/schemas/assays/components/imaging/ihc_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,108 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,111 copying build/lib/cidc_schemas/schemas/assays/components/imaging/ihc_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,114 copying build/lib/cidc_schemas/schemas/assays/components/imaging/micsss_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,117 copying build/lib/cidc_schemas/schemas/assays/components/imaging/ihc_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,121 copying build/lib/cidc_schemas/schemas/assays/components/imaging/micsss_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,124 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-02-25T19:38:53,127 copying build/lib/cidc_schemas/schemas/assays/components/available_ngs_analyses.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,130 copying build/lib/cidc_schemas/schemas/assays/components/fastq_pair_or_bam.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-02-25T19:38:53,134 copying build/lib/cidc_schemas/schemas/assays/elisa_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,137 copying build/lib/cidc_schemas/schemas/assays/cytof_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,141 copying build/lib/cidc_schemas/schemas/assays/olink_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,144 copying build/lib/cidc_schemas/schemas/assays/rna_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,148 copying build/lib/cidc_schemas/schemas/assays/micsss_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,151 copying build/lib/cidc_schemas/schemas/assays/ihc_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,154 copying build/lib/cidc_schemas/schemas/assays/mif_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,157 copying build/lib/cidc_schemas/schemas/assays/wes_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-02-25T19:38:53,160 copying build/lib/cidc_schemas/schemas/aliquot.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-02-25T19:38:53,164 copying build/lib/cidc_schemas/schemas/participant.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-02-25T19:38:53,169 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,170 copying build/lib/cidc_schemas/schemas/artifacts/artifact_xlsx.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,201 copying build/lib/cidc_schemas/schemas/artifacts/artifact_json.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,206 copying build/lib/cidc_schemas/schemas/artifacts/artifact_gz.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,210 copying build/lib/cidc_schemas/schemas/artifacts/artifact_bam_bai.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,215 copying build/lib/cidc_schemas/schemas/artifacts/artifact_vcf_gz.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,220 copying build/lib/cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,225 copying build/lib/cidc_schemas/schemas/artifacts/artifact_npx.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,230 copying build/lib/cidc_schemas/schemas/artifacts/artifact_tsv.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,234 copying build/lib/cidc_schemas/schemas/artifacts/artifact_image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,237 copying build/lib/cidc_schemas/schemas/artifacts/artifact_fcs.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,240 copying build/lib/cidc_schemas/schemas/artifacts/artifact_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,244 copying build/lib/cidc_schemas/schemas/artifacts/artifact_maf.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,247 copying build/lib/cidc_schemas/schemas/artifacts/artifact_tbi.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,250 copying build/lib/cidc_schemas/schemas/artifacts/artifact_vcf.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,253 copying build/lib/cidc_schemas/schemas/artifacts/artifact_binary.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,257 copying build/lib/cidc_schemas/schemas/artifacts/artifact_fastq_gz.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,260 copying build/lib/cidc_schemas/schemas/artifacts/artifact_csv.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,263 copying build/lib/cidc_schemas/schemas/artifacts/artifact_bam.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,266 copying build/lib/cidc_schemas/schemas/artifacts/artifact_text.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,269 copying build/lib/cidc_schemas/schemas/artifacts/artifact_zip.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-02-25T19:38:53,273 creating build/bdist.linux-armv7l/wheel/cidc_schemas/metaschema 2020-02-25T19:38:53,275 copying build/lib/cidc_schemas/metaschema/strict_meta_schema.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/metaschema 2020-02-25T19:38:53,279 copying build/lib/cidc_schemas/template.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,282 copying build/lib/cidc_schemas/unprism.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,286 copying build/lib/cidc_schemas/migrations.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,290 copying build/lib/cidc_schemas/cli.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,293 copying build/lib/cidc_schemas/json_validation.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,297 copying build/lib/cidc_schemas/constants.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,301 creating build/bdist.linux-armv7l/wheel/cidc_schemas/pipeline_configs 2020-02-25T19:38:53,303 copying build/lib/cidc_schemas/pipeline_configs/rnaseq_analysis_config.yaml.j2 -> build/bdist.linux-armv7l/wheel/cidc_schemas/pipeline_configs 2020-02-25T19:38:53,306 copying build/lib/cidc_schemas/pipeline_configs/wes_analysis_config.yaml.j2 -> build/bdist.linux-armv7l/wheel/cidc_schemas/pipeline_configs 2020-02-25T19:38:53,310 copying build/lib/cidc_schemas/prism.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,315 copying build/lib/cidc_schemas/template_reader.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,319 copying build/lib/cidc_schemas/__init__.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,322 copying build/lib/cidc_schemas/template_writer.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-02-25T19:38:53,326 running install_egg_info 2020-02-25T19:38:53,341 Copying cidc_schemas.egg-info to build/bdist.linux-armv7l/wheel/cidc_schemas-0.16.7-py3.7.egg-info 2020-02-25T19:38:53,367 running install_scripts 2020-02-25T19:38:53,501 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-02-25T19:38:53,505 adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") 2020-02-25T19:38:53,514 creating build/bdist.linux-armv7l/wheel/cidc_schemas-0.16.7.dist-info/WHEEL 2020-02-25T19:38:53,519 creating '/tmp/pip-wheel-esosclc4/cidc_schemas-0.16.7-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-02-25T19:38:53,523 adding 'cidc_schemas/__init__.py' 2020-02-25T19:38:53,526 adding 'cidc_schemas/cli.py' 2020-02-25T19:38:53,528 adding 'cidc_schemas/constants.py' 2020-02-25T19:38:53,532 adding 'cidc_schemas/json_validation.py' 2020-02-25T19:38:53,534 adding 'cidc_schemas/migrations.py' 2020-02-25T19:38:53,544 adding 'cidc_schemas/prism.py' 2020-02-25T19:38:53,547 adding 'cidc_schemas/template.py' 2020-02-25T19:38:53,550 adding 'cidc_schemas/template_reader.py' 2020-02-25T19:38:53,554 adding 'cidc_schemas/template_writer.py' 2020-02-25T19:38:53,557 adding 'cidc_schemas/unprism.py' 2020-02-25T19:38:53,560 adding 'cidc_schemas/util.py' 2020-02-25T19:38:53,564 adding 'cidc_schemas/metaschema/strict_meta_schema.json' 2020-02-25T19:38:53,567 adding 'cidc_schemas/pipeline_configs/rnaseq_analysis_config.yaml.j2' 2020-02-25T19:38:53,569 adding 'cidc_schemas/pipeline_configs/wes_analysis_config.yaml.j2' 2020-02-25T19:38:53,572 adding 'cidc_schemas/schemas/aliquot.json' 2020-02-25T19:38:53,574 adding 'cidc_schemas/schemas/clinical_trial.json' 2020-02-25T19:38:53,577 adding 'cidc_schemas/schemas/participant.json' 2020-02-25T19:38:53,580 adding 'cidc_schemas/schemas/sample.json' 2020-02-25T19:38:53,583 adding 'cidc_schemas/schemas/shipping_core.json' 2020-02-25T19:38:53,586 adding 'cidc_schemas/schemas/artifacts/artifact_bam.json' 2020-02-25T19:38:53,589 adding 'cidc_schemas/schemas/artifacts/artifact_bam_bai.json' 2020-02-25T19:38:53,591 adding 'cidc_schemas/schemas/artifacts/artifact_binary.json' 2020-02-25T19:38:53,593 adding 'cidc_schemas/schemas/artifacts/artifact_core.json' 2020-02-25T19:38:53,595 adding 'cidc_schemas/schemas/artifacts/artifact_csv.json' 2020-02-25T19:38:53,597 adding 'cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json' 2020-02-25T19:38:53,599 adding 'cidc_schemas/schemas/artifacts/artifact_fastq_gz.json' 2020-02-25T19:38:53,601 adding 'cidc_schemas/schemas/artifacts/artifact_fcs.json' 2020-02-25T19:38:53,603 adding 'cidc_schemas/schemas/artifacts/artifact_gz.json' 2020-02-25T19:38:53,606 adding 'cidc_schemas/schemas/artifacts/artifact_image.json' 2020-02-25T19:38:53,608 adding 'cidc_schemas/schemas/artifacts/artifact_json.json' 2020-02-25T19:38:53,610 adding 'cidc_schemas/schemas/artifacts/artifact_maf.json' 2020-02-25T19:38:53,612 adding 'cidc_schemas/schemas/artifacts/artifact_npx.json' 2020-02-25T19:38:53,614 adding 'cidc_schemas/schemas/artifacts/artifact_tbi.json' 2020-02-25T19:38:53,616 adding 'cidc_schemas/schemas/artifacts/artifact_text.json' 2020-02-25T19:38:53,618 adding 'cidc_schemas/schemas/artifacts/artifact_tsv.json' 2020-02-25T19:38:53,620 adding 'cidc_schemas/schemas/artifacts/artifact_vcf.json' 2020-02-25T19:38:53,623 adding 'cidc_schemas/schemas/artifacts/artifact_vcf_gz.json' 2020-02-25T19:38:53,625 adding 'cidc_schemas/schemas/artifacts/artifact_xlsx.json' 2020-02-25T19:38:53,627 adding 'cidc_schemas/schemas/artifacts/artifact_zip.json' 2020-02-25T19:38:53,630 adding 'cidc_schemas/schemas/assays/cytof_assay.json' 2020-02-25T19:38:53,632 adding 'cidc_schemas/schemas/assays/elisa_assay.json' 2020-02-25T19:38:53,634 adding 'cidc_schemas/schemas/assays/ihc_assay.json' 2020-02-25T19:38:53,637 adding 'cidc_schemas/schemas/assays/micsss_assay.json' 2020-02-25T19:38:53,639 adding 'cidc_schemas/schemas/assays/mif_assay.json' 2020-02-25T19:38:53,641 adding 'cidc_schemas/schemas/assays/olink_assay.json' 2020-02-25T19:38:53,643 adding 'cidc_schemas/schemas/assays/rna_assay.json' 2020-02-25T19:38:53,645 adding 'cidc_schemas/schemas/assays/wes_assay.json' 2020-02-25T19:38:53,649 adding 'cidc_schemas/schemas/assays/components/antibody.json' 2020-02-25T19:38:53,650 adding 'cidc_schemas/schemas/assays/components/assay_core.json' 2020-02-25T19:38:53,653 adding 'cidc_schemas/schemas/assays/components/available_assays.json' 2020-02-25T19:38:53,655 adding 'cidc_schemas/schemas/assays/components/available_ngs_analyses.json' 2020-02-25T19:38:53,657 adding 'cidc_schemas/schemas/assays/components/composite_image.json' 2020-02-25T19:38:53,659 adding 'cidc_schemas/schemas/assays/components/fastq_pair_or_bam.json' 2020-02-25T19:38:53,661 adding 'cidc_schemas/schemas/assays/components/image.json' 2020-02-25T19:38:53,663 adding 'cidc_schemas/schemas/assays/components/imaging_data.json' 2020-02-25T19:38:53,665 adding 'cidc_schemas/schemas/assays/components/local_file.json' 2020-02-25T19:38:53,667 adding 'cidc_schemas/schemas/assays/components/mapping.json' 2020-02-25T19:38:53,669 adding 'cidc_schemas/schemas/assays/components/micsss_antibody.json' 2020-02-25T19:38:53,672 adding 'cidc_schemas/schemas/assays/components/mif_antibody.json' 2020-02-25T19:38:53,673 adding 'cidc_schemas/schemas/assays/components/multiple_local_files.json' 2020-02-25T19:38:53,677 adding 'cidc_schemas/schemas/assays/components/ngs_assay_core.json' 2020-02-25T19:38:53,680 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_analysis.json' 2020-02-25T19:38:53,682 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_antibody.json' 2020-02-25T19:38:53,684 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_entry.json' 2020-02-25T19:38:53,686 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_input.json' 2020-02-25T19:38:53,689 adding 'cidc_schemas/schemas/assays/components/elisa/elisa_antibody.json' 2020-02-25T19:38:53,692 adding 'cidc_schemas/schemas/assays/components/imaging/ihc_antibody.json' 2020-02-25T19:38:53,694 adding 'cidc_schemas/schemas/assays/components/imaging/ihc_entry.json' 2020-02-25T19:38:53,696 adding 'cidc_schemas/schemas/assays/components/imaging/ihc_input.json' 2020-02-25T19:38:53,698 adding 'cidc_schemas/schemas/assays/components/imaging/micsss_entry.json' 2020-02-25T19:38:53,700 adding 'cidc_schemas/schemas/assays/components/imaging/micsss_input.json' 2020-02-25T19:38:53,703 adding 'cidc_schemas/schemas/assays/components/imaging/mif_entry.json' 2020-02-25T19:38:53,705 adding 'cidc_schemas/schemas/assays/components/imaging/mif_input.json' 2020-02-25T19:38:53,708 adding 'cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json' 2020-02-25T19:38:53,711 adding 'cidc_schemas/schemas/assays/components/ngs/rna/rna_entry.json' 2020-02-25T19:38:53,715 adding 'cidc_schemas/schemas/assays/components/ngs/wes/alignment.json' 2020-02-25T19:38:53,717 adding 'cidc_schemas/schemas/assays/components/ngs/wes/clonality.json' 2020-02-25T19:38:53,719 adding 'cidc_schemas/schemas/assays/components/ngs/wes/copynumber.json' 2020-02-25T19:38:53,721 adding 'cidc_schemas/schemas/assays/components/ngs/wes/corealignments.json' 2020-02-25T19:38:53,723 adding 'cidc_schemas/schemas/assays/components/ngs/wes/coverage_metrics.json' 2020-02-25T19:38:53,725 adding 'cidc_schemas/schemas/assays/components/ngs/wes/germline.json' 2020-02-25T19:38:53,727 adding 'cidc_schemas/schemas/assays/components/ngs/wes/neoantigen.json' 2020-02-25T19:38:53,729 adding 'cidc_schemas/schemas/assays/components/ngs/wes/optitype.json' 2020-02-25T19:38:53,731 adding 'cidc_schemas/schemas/assays/components/ngs/wes/purity.json' 2020-02-25T19:38:53,733 adding 'cidc_schemas/schemas/assays/components/ngs/wes/report.json' 2020-02-25T19:38:53,735 adding 'cidc_schemas/schemas/assays/components/ngs/wes/somatic.json' 2020-02-25T19:38:53,738 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_analysis.json' 2020-02-25T19:38:53,740 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_entry.json' 2020-02-25T19:38:53,742 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_pair_analysis.json' 2020-02-25T19:38:53,744 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_sample_analysis.json' 2020-02-25T19:38:53,747 adding 'cidc_schemas/schemas/assays/components/olink/olink_combined.json' 2020-02-25T19:38:53,750 adding 'cidc_schemas/schemas/assays/components/olink/olink_entry.json' 2020-02-25T19:38:53,752 adding 'cidc_schemas/schemas/assays/components/olink/olink_input.json' 2020-02-25T19:38:53,756 adding 'cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json' 2020-02-25T19:38:53,759 adding 'cidc_schemas/schemas/templates/analyses/wes_analysis_template.json' 2020-02-25T19:38:53,763 adding 'cidc_schemas/schemas/templates/manifests/h_and_e_template.json' 2020-02-25T19:38:53,766 adding 'cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json' 2020-02-25T19:38:53,769 adding 'cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json' 2020-02-25T19:38:53,772 adding 'cidc_schemas/schemas/templates/manifests/pbmc_template.json' 2020-02-25T19:38:53,775 adding 'cidc_schemas/schemas/templates/manifests/plasma_template.json' 2020-02-25T19:38:53,778 adding 'cidc_schemas/schemas/templates/manifests/tissue_slide_template.json' 2020-02-25T19:38:53,780 adding 'cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json' 2020-02-25T19:38:53,783 adding 'cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json' 2020-02-25T19:38:53,787 adding 'cidc_schemas/schemas/templates/metadata/cytof_template.json' 2020-02-25T19:38:53,789 adding 'cidc_schemas/schemas/templates/metadata/elisa_template.json' 2020-02-25T19:38:53,792 adding 'cidc_schemas/schemas/templates/metadata/ihc_template.json' 2020-02-25T19:38:53,794 adding 'cidc_schemas/schemas/templates/metadata/olink_template.json' 2020-02-25T19:38:53,796 adding 'cidc_schemas/schemas/templates/metadata/rna_bam_template.json' 2020-02-25T19:38:53,799 adding 'cidc_schemas/schemas/templates/metadata/rna_fastq_template.json' 2020-02-25T19:38:53,801 adding 'cidc_schemas/schemas/templates/metadata/wes_bam_template.json' 2020-02-25T19:38:53,803 adding 'cidc_schemas/schemas/templates/metadata/wes_fastq_template.json' 2020-02-25T19:38:53,807 adding 'cidc_schemas-0.16.7.dist-info/AUTHORS.rst' 2020-02-25T19:38:53,809 adding 'cidc_schemas-0.16.7.dist-info/LICENSE' 2020-02-25T19:38:53,811 adding 'cidc_schemas-0.16.7.dist-info/METADATA' 2020-02-25T19:38:53,813 adding 'cidc_schemas-0.16.7.dist-info/WHEEL' 2020-02-25T19:38:53,815 adding 'cidc_schemas-0.16.7.dist-info/entry_points.txt' 2020-02-25T19:38:53,816 adding 'cidc_schemas-0.16.7.dist-info/top_level.txt' 2020-02-25T19:38:53,819 adding 'cidc_schemas-0.16.7.dist-info/RECORD' 2020-02-25T19:38:53,828 removing build/bdist.linux-armv7l/wheel 2020-02-25T19:38:54,014 Building wheel for cidc-schemas (setup.py): finished with status 'done' 2020-02-25T19:38:54,019 Created wheel for cidc-schemas: filename=cidc_schemas-0.16.7-py2.py3-none-any.whl size=122996 sha256=edfce987db284411952a1921827b5b76324468ff447c67ba3a1a7f91e1211487 2020-02-25T19:38:54,020 Stored in directory: /tmp/pip-ephem-wheel-cache-6tnpk4di/wheels/43/a2/4e/3b054e5fc375bb15c0abc86bc260d2dcfdfaec6769213ca0a8 2020-02-25T19:38:54,023 Successfully built cidc-schemas 2020-02-25T19:38:54,164 Cleaning up... 2020-02-25T19:38:54,165 Removing source in /tmp/pip-wheel-tzqbhmjl/cidc-schemas 2020-02-25T19:38:54,385 Removed build tracker: '/tmp/pip-req-tracker-0nzf6cmz'