2020-02-26T11:10:16 Created temporary directory: /tmp/pip-ephem-wheel-cache-a7l3ywtp
2020-02-26T11:10:16 Created temporary directory: /tmp/pip-req-tracker-lpau4izk
2020-02-26T11:10:16 Created requirements tracker '/tmp/pip-req-tracker-lpau4izk'
2020-02-26T11:10:16 Created temporary directory: /tmp/pip-wheel-z4md8pq9
2020-02-26T11:10:16 Collecting pygom==0.1.6
2020-02-26T11:10:16   1 location(s) to search for versions of pygom:
2020-02-26T11:10:16   * https://pypi.org/simple/pygom/
2020-02-26T11:10:16   Getting page https://pypi.org/simple/pygom/
2020-02-26T11:10:16   Analyzing links from page https://pypi.org/simple/pygom/
2020-02-26T11:10:16     Skipping link https://files.pythonhosted.org/packages/b6/64/9f5f0c582270f4fa6336ab727dc8ae04f4a450307b4159cee9a89cf41706/pygom-0.1.0-py2.7.egg#sha256=a57d8bfa86d68e33737b283d7ae8e211fc7294d446acc21f7889053162977208 (from https://pypi.org/simple/pygom/); unsupported archive format: .egg
2020-02-26T11:10:16     Found link https://files.pythonhosted.org/packages/be/f0/4378974b05e34251b59a7c1ee48e871ab9e61ca804d6b7b84d2b3cd30ccd/pygom-0.1.0.tar.gz#sha256=10a973ac1aeac930fc8ea71507517b48eb9df79ce33d232fd73bfe3d477bc578 (from https://pypi.org/simple/pygom/), version: 0.1.0
2020-02-26T11:10:16     Found link https://files.pythonhosted.org/packages/3f/06/5c848ec61811d1cf4544ad492f45c63769bdbc53a898106ae2c7f944eaaf/pygom-0.1.1.tar.gz#sha256=d5eaf3d646b3a8be94580c6761d4a4eca308bfcb2d6de1272de1ed8031e714d8 (from https://pypi.org/simple/pygom/), version: 0.1.1
2020-02-26T11:10:16     Found link https://files.pythonhosted.org/packages/24/97/d708814dbc6a86450d134418696b9ef1ffd217abc33c71392df7fab9fe08/pygom-0.1.4.tar.gz#sha256=8bdb39a21332cbe45c63abe5a54a6905c8757201a5f7d4e94b7bf4cacfd9d760 (from https://pypi.org/simple/pygom/), version: 0.1.4
2020-02-26T11:10:16     Found link https://files.pythonhosted.org/packages/fa/dc/54b34416f5d21618e781f0fce562a4d85e7291b9e50b9f14c4e9f2d98126/pygom-0.1.5.tar.gz#sha256=6e2183691d9f876d986859287b928b41e6ba384e6bb79e69acc903616e55f082 (from https://pypi.org/simple/pygom/), version: 0.1.5
2020-02-26T11:10:16     Found link https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db (from https://pypi.org/simple/pygom/), version: 0.1.6
2020-02-26T11:10:16   Using version 0.1.6 (newest of versions: 0.1.6)
2020-02-26T11:10:16   Created temporary directory: /tmp/pip-unpack-_651cq42
2020-02-26T11:10:16   Downloading https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz (489kB)
2020-02-26T11:10:16   Downloading from URL https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db (from https://pypi.org/simple/pygom/)
2020-02-26T11:10:17   Added pygom==0.1.6 from https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db to build tracker '/tmp/pip-req-tracker-lpau4izk'
2020-02-26T11:10:17     Running setup.py (path:/tmp/pip-wheel-z4md8pq9/pygom/setup.py) egg_info for package pygom
2020-02-26T11:10:17     Running command python setup.py egg_info
2020-02-26T11:10:27     running egg_info
2020-02-26T11:10:27     creating pip-egg-info/pygom.egg-info
2020-02-26T11:10:27     writing dependency_links to pip-egg-info/pygom.egg-info/dependency_links.txt
2020-02-26T11:10:27     writing pip-egg-info/pygom.egg-info/PKG-INFO
2020-02-26T11:10:27     writing top-level names to pip-egg-info/pygom.egg-info/top_level.txt
2020-02-26T11:10:27     writing requirements to pip-egg-info/pygom.egg-info/requires.txt
2020-02-26T11:10:27     writing manifest file 'pip-egg-info/pygom.egg-info/SOURCES.txt'
2020-02-26T11:10:27     reading manifest file 'pip-egg-info/pygom.egg-info/SOURCES.txt'
2020-02-26T11:10:27     reading manifest template 'MANIFEST.in'
2020-02-26T11:10:27     warning: no files found matching 'data/*.json'
2020-02-26T11:10:27     writing manifest file 'pip-egg-info/pygom.egg-info/SOURCES.txt'
2020-02-26T11:10:28   Source in /tmp/pip-wheel-z4md8pq9/pygom has version 0.1.6, which satisfies requirement pygom==0.1.6 from https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db
2020-02-26T11:10:28   Removed pygom==0.1.6 from https://files.pythonhosted.org/packages/06/fe/c0f9fd7db36ef9296a40aa276b772aa5a47d73075ee046270d7c68bd9525/pygom-0.1.6.tar.gz#sha256=4cac2778e81d1f0931b2fe032dd864cf5364b605fbd2d799050d6cbd8efaa8db from build tracker '/tmp/pip-req-tracker-lpau4izk'
2020-02-26T11:10:28 Building wheels for collected packages: pygom
2020-02-26T11:10:28   Created temporary directory: /tmp/pip-wheel-9vk0inpj
2020-02-26T11:10:28   Building wheel for pygom (setup.py): started
2020-02-26T11:10:28   Destination directory: /tmp/pip-wheel-9vk0inpj
2020-02-26T11:10:28   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-z4md8pq9/pygom/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9vk0inpj
2020-02-26T11:10:32   running bdist_wheel
2020-02-26T11:10:32   running build
2020-02-26T11:10:32   running build_py
2020-02-26T11:10:33   creating build
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5/pygom
2020-02-26T11:10:33   copying pygom/__init__.py -> build/lib.linux-armv7l-3.5/pygom
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/simulate.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/base_ode_model.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/_model_verification.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/stochastic_simulation.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/_model_errors.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/_ode_composition.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/epi_analysis.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/__init__.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/ode_variable.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/deterministic.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/common_models.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/transition.py -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5/pygom/model/ode_utils
2020-02-26T11:10:33   copying pygom/model/ode_utils/compile_canary.py -> build/lib.linux-armv7l-3.5/pygom/model/ode_utils
2020-02-26T11:10:33   copying pygom/model/ode_utils/__init__.py -> build/lib.linux-armv7l-3.5/pygom/model/ode_utils
2020-02-26T11:10:33   copying pygom/model/ode_utils/plot_det.py -> build/lib.linux-armv7l-3.5/pygom/model/ode_utils
2020-02-26T11:10:33   copying pygom/model/ode_utils/checks_and_conversions.py -> build/lib.linux-armv7l-3.5/pygom/model/ode_utils
2020-02-26T11:10:33   copying pygom/model/ode_utils/plot_stoc.py -> build/lib.linux-armv7l-3.5/pygom/model/ode_utils
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/get_init.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/base_loss.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/loss_type.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/confidence_interval.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/ode_loss.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/read_epijson.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/__init__.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   copying pygom/loss/epijson_loss.py -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5/pygom/utilR
2020-02-26T11:10:33   copying pygom/utilR/distn.py -> build/lib.linux-armv7l-3.5/pygom/utilR
2020-02-26T11:10:33   copying pygom/utilR/__init__.py -> build/lib.linux-armv7l-3.5/pygom/utilR
2020-02-26T11:10:33   running egg_info
2020-02-26T11:10:33   writing dependency_links to pygom.egg-info/dependency_links.txt
2020-02-26T11:10:33   writing top-level names to pygom.egg-info/top_level.txt
2020-02-26T11:10:33   writing pygom.egg-info/PKG-INFO
2020-02-26T11:10:33   writing requirements to pygom.egg-info/requires.txt
2020-02-26T11:10:33   reading manifest file 'pygom.egg-info/SOURCES.txt'
2020-02-26T11:10:33   reading manifest template 'MANIFEST.in'
2020-02-26T11:10:33   warning: no files found matching 'data/*.json'
2020-02-26T11:10:33   writing manifest file 'pygom.egg-info/SOURCES.txt'
2020-02-26T11:10:33   creating build/lib.linux-armv7l-3.5/pygom/data
2020-02-26T11:10:33   copying pygom/data/eg1.json -> build/lib.linux-armv7l-3.5/pygom/data
2020-02-26T11:10:33   copying pygom/model/_tau_leap.c -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/model/_tau_leap.pyx -> build/lib.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   copying pygom/loss/.gitignore -> build/lib.linux-armv7l-3.5/pygom/loss
2020-02-26T11:10:33   running build_ext
2020-02-26T11:10:33   skipping 'pygom/model/_tau_leap.c' Cython extension (up-to-date)
2020-02-26T11:10:33   building 'pygom.model._tau_leap' extension
2020-02-26T11:10:33   creating build/temp.linux-armv7l-3.5
2020-02-26T11:10:33   creating build/temp.linux-armv7l-3.5/pygom
2020-02-26T11:10:33   creating build/temp.linux-armv7l-3.5/pygom/model
2020-02-26T11:10:33   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c pygom/model/_tau_leap.c -o build/temp.linux-armv7l-3.5/pygom/model/_tau_leap.o
2020-02-26T11:10:36   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0,
2020-02-26T11:10:36                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18,
2020-02-26T11:10:36                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-02-26T11:10:36                    from pygom/model/_tau_leap.c:598:
2020-02-26T11:10:36   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-02-26T11:10:36    #warning "Using deprecated NumPy API, disable it by " \
2020-02-26T11:10:36     ^~~~~~~
2020-02-26T11:10:46   pygom/model/_tau_leap.c: In function '__pyx_pf_5pygom_5model_9_tau_leap__cy_test_tau_leap_safety.isra.36':
2020-02-26T11:10:46   pygom/model/_tau_leap.c:2877:12: warning: '__pyx_v_new_cdf' may be used uninitialized in this function [-Wmaybe-uninitialized]
2020-02-26T11:10:46            if (__pyx_t_5) {
2020-02-26T11:10:46               ^
2020-02-26T11:10:59   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-6waWnr/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/pygom/model/_tau_leap.o -o build/lib.linux-armv7l-3.5/pygom/model/_tau_leap.cpython-35m-arm-linux-gnueabihf.so
2020-02-26T11:10:59   installing to build/bdist.linux-armv7l/wheel
2020-02-26T11:10:59   running install
2020-02-26T11:10:59   running install_lib
2020-02-26T11:10:59   creating build/bdist.linux-armv7l
2020-02-26T11:10:59   creating build/bdist.linux-armv7l/wheel
2020-02-26T11:10:59   creating build/bdist.linux-armv7l/wheel/pygom
2020-02-26T11:10:59   creating build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/_tau_leap.pyx -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/simulate.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:10:59   creating build/bdist.linux-armv7l/wheel/pygom/model/ode_utils
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/ode_utils/compile_canary.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/ode_utils/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/ode_utils/plot_det.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/ode_utils/checks_and_conversions.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/ode_utils/plot_stoc.py -> build/bdist.linux-armv7l/wheel/pygom/model/ode_utils
2020-02-26T11:10:59   copying build/lib.linux-armv7l-3.5/pygom/model/_tau_leap.c -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/base_ode_model.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/_model_verification.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/stochastic_simulation.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/_model_errors.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/_ode_composition.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/_tau_leap.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/epi_analysis.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/ode_variable.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/deterministic.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/common_models.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/model/transition.py -> build/bdist.linux-armv7l/wheel/pygom/model
2020-02-26T11:11:00   creating build/bdist.linux-armv7l/wheel/pygom/data
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/data/eg1.json -> build/bdist.linux-armv7l/wheel/pygom/data
2020-02-26T11:11:00   creating build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/get_init.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/.gitignore -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/base_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/loss_type.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/confidence_interval.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/ode_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/read_epijson.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/loss/epijson_loss.py -> build/bdist.linux-armv7l/wheel/pygom/loss
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/__init__.py -> build/bdist.linux-armv7l/wheel/pygom
2020-02-26T11:11:00   creating build/bdist.linux-armv7l/wheel/pygom/utilR
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/utilR/distn.py -> build/bdist.linux-armv7l/wheel/pygom/utilR
2020-02-26T11:11:00   copying build/lib.linux-armv7l-3.5/pygom/utilR/__init__.py -> build/bdist.linux-armv7l/wheel/pygom/utilR
2020-02-26T11:11:00   running install_egg_info
2020-02-26T11:11:00   Copying pygom.egg-info to build/bdist.linux-armv7l/wheel/pygom-0.1.6-py3.5.egg-info
2020-02-26T11:11:00   running install_scripts
2020-02-26T11:11:00   creating build/bdist.linux-armv7l/wheel/pygom-0.1.6.dist-info/WHEEL
2020-02-26T11:11:01   Building wheel for pygom (setup.py): finished with status 'done'
2020-02-26T11:11:01   Stored in directory: /tmp/tmpyzz7q2hf
2020-02-26T11:11:01 Successfully built pygom
2020-02-26T11:11:01 Cleaning up...
2020-02-26T11:11:01   Removing source in /tmp/pip-wheel-z4md8pq9/pygom
2020-02-26T11:11:01 Removed build tracker '/tmp/pip-req-tracker-lpau4izk'