Created temporary directory: /tmp/pip-ephem-wheel-cache-yyhykch4 Created temporary directory: /tmp/pip-req-tracker-2pau2td5 Created requirements tracker '/tmp/pip-req-tracker-2pau2td5' Created temporary directory: /tmp/pip-wheel-15y3bk3f Collecting traitar3==0.1.0 1 location(s) to search for versions of traitar3: * https://pypi.org/simple/traitar3/ Getting page https://pypi.org/simple/traitar3/ Analyzing links from page https://pypi.org/simple/traitar3/ Found link https://files.pythonhosted.org/packages/57/18/e83c82f475efd26afc53e0f8ea8661fd13c4ec6b06b607219381dbeeb10a/traitar3-0.1.0.tar.gz#sha256=55b3ab122afbec521467b1b4fd3157b1e54a640fa9a3640d4215f76f3fb5f107 (from https://pypi.org/simple/traitar3/), version: 0.1.0 Using version 0.1.0 (newest of versions: 0.1.0) Created temporary directory: /tmp/pip-unpack-yabgsnq4 Downloading https://files.pythonhosted.org/packages/57/18/e83c82f475efd26afc53e0f8ea8661fd13c4ec6b06b607219381dbeeb10a/traitar3-0.1.0.tar.gz (8.4MB) Downloading from URL https://files.pythonhosted.org/packages/57/18/e83c82f475efd26afc53e0f8ea8661fd13c4ec6b06b607219381dbeeb10a/traitar3-0.1.0.tar.gz#sha256=55b3ab122afbec521467b1b4fd3157b1e54a640fa9a3640d4215f76f3fb5f107 (from https://pypi.org/simple/traitar3/) Added traitar3==0.1.0 from https://files.pythonhosted.org/packages/57/18/e83c82f475efd26afc53e0f8ea8661fd13c4ec6b06b607219381dbeeb10a/traitar3-0.1.0.tar.gz#sha256=55b3ab122afbec521467b1b4fd3157b1e54a640fa9a3640d4215f76f3fb5f107 to build tracker '/tmp/pip-req-tracker-2pau2td5' Running setup.py (path:/tmp/pip-wheel-15y3bk3f/traitar3/setup.py) egg_info for package traitar3 Running command python setup.py egg_info running egg_info creating pip-egg-info/traitar3.egg-info writing requirements to pip-egg-info/traitar3.egg-info/requires.txt writing entry points to pip-egg-info/traitar3.egg-info/entry_points.txt writing dependency_links to pip-egg-info/traitar3.egg-info/dependency_links.txt writing pip-egg-info/traitar3.egg-info/PKG-INFO writing top-level names to pip-egg-info/traitar3.egg-info/top_level.txt writing manifest file 'pip-egg-info/traitar3.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/traitar3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'config.json' found under directory 'traitar' warning: no previously-included files matching '*.pyc' found under directory 'traitar' warning: no previously-included files matching '*.swp' found under directory 'traitar' writing manifest file 'pip-egg-info/traitar3.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-15y3bk3f/traitar3 has version 0.1.0, which satisfies requirement traitar3==0.1.0 from https://files.pythonhosted.org/packages/57/18/e83c82f475efd26afc53e0f8ea8661fd13c4ec6b06b607219381dbeeb10a/traitar3-0.1.0.tar.gz#sha256=55b3ab122afbec521467b1b4fd3157b1e54a640fa9a3640d4215f76f3fb5f107 Removed traitar3==0.1.0 from https://files.pythonhosted.org/packages/57/18/e83c82f475efd26afc53e0f8ea8661fd13c4ec6b06b607219381dbeeb10a/traitar3-0.1.0.tar.gz#sha256=55b3ab122afbec521467b1b4fd3157b1e54a640fa9a3640d4215f76f3fb5f107 from build tracker '/tmp/pip-req-tracker-2pau2td5' Building wheels for collected packages: traitar3 Created temporary directory: /tmp/pip-wheel-tzj5wc8n Running setup.py bdist_wheel for traitar3: started Destination directory: /tmp/pip-wheel-tzj5wc8n Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-15y3bk3f/traitar3/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-tzj5wc8n running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/traitar copying traitar/hmm2gff.py -> build/lib/traitar copying traitar/modify.py -> build/lib/traitar copying traitar/hmmer2filtered_best.py -> build/lib/traitar copying traitar/domtblout2gene_generic.py -> build/lib/traitar copying traitar/PhenotypeCollection.py -> build/lib/traitar copying traitar/utils.py -> build/lib/traitar copying traitar/merge_preds.py -> build/lib/traitar copying traitar/heatmap.py -> build/lib/traitar copying traitar/traitar_cls.py -> build/lib/traitar copying traitar/__init__.py -> build/lib/traitar copying traitar/__main__.py -> build/lib/traitar copying traitar/get_external_data.py -> build/lib/traitar copying traitar/evaluation.py -> build/lib/traitar copying traitar/_version.py -> build/lib/traitar copying traitar/predict.py -> build/lib/traitar creating build/lib/tests copying tests/test_pfam.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests copying tests/test_Phenotype.py -> build/lib/tests creating build/lib/traitar/Commands copying traitar/Commands/phenotype.py -> build/lib/traitar/Commands copying traitar/Commands/show.py -> build/lib/traitar/Commands copying traitar/Commands/evaluate.py -> build/lib/traitar/Commands copying traitar/Commands/new.py -> build/lib/traitar/Commands copying traitar/Commands/pfam.py -> build/lib/traitar/Commands copying traitar/Commands/__init__.py -> build/lib/traitar/Commands copying traitar/Commands/remove.py -> build/lib/traitar/Commands copying traitar/Commands/annotate.py -> build/lib/traitar/Commands creating build/lib/traitar/data copying traitar/data/colors.txt -> build/lib/traitar/data creating build/lib/traitar/data/models copying traitar/data/models/phypat.tar.gz -> build/lib/traitar/data/models copying traitar/data/models/phypat+PGL.tar.gz -> build/lib/traitar/data/models creating build/lib/traitar/data/sample_data copying traitar/data/sample_data/1457190.3.RefSeq.faa -> build/lib/traitar/data/sample_data copying traitar/data/sample_data/1457190.3.RefSeq.gff -> build/lib/traitar/data/sample_data copying traitar/data/sample_data/525367.9.RefSeq.faa -> build/lib/traitar/data/sample_data copying traitar/data/sample_data/525367.9.RefSeq.gff -> build/lib/traitar/data/sample_data copying traitar/data/sample_data/samples_gene_gff.txt -> build/lib/traitar/data/sample_data copying traitar/data/sample_data/samples.txt -> build/lib/traitar/data/sample_data running build_scripts creating build/scripts-3.4 copying and adjusting traitar/merge_preds.py -> build/scripts-3.4 copying and adjusting traitar/heatmap.py -> build/scripts-3.4 copying and adjusting traitar/domtblout2gene_generic.py -> build/scripts-3.4 copying and adjusting traitar/predict.py -> build/scripts-3.4 copying and adjusting traitar/hmmer2filtered_best.py -> build/scripts-3.4 copying and adjusting traitar/hmm2gff.py -> build/scripts-3.4 changing mode of build/scripts-3.4/merge_preds.py from 644 to 755 changing mode of build/scripts-3.4/heatmap.py from 644 to 755 changing mode of build/scripts-3.4/domtblout2gene_generic.py from 644 to 755 changing mode of build/scripts-3.4/predict.py from 644 to 755 changing mode of build/scripts-3.4/hmmer2filtered_best.py from 644 to 755 changing mode of build/scripts-3.4/hmm2gff.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/hmm2gff.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/modify.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/hmmer2filtered_best.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/domtblout2gene_generic.py -> build/bdist.linux-armv7l/wheel/traitar creating build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/phenotype.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/show.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/evaluate.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/new.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/pfam.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/__init__.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/remove.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/Commands/annotate.py -> build/bdist.linux-armv7l/wheel/traitar/Commands copying build/lib/traitar/PhenotypeCollection.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/utils.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/merge_preds.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/heatmap.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/traitar_cls.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/__init__.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/__main__.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/get_external_data.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/evaluation.py -> build/bdist.linux-armv7l/wheel/traitar creating build/bdist.linux-armv7l/wheel/traitar/data creating build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/sample_data/samples.txt -> build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/sample_data/1457190.3.RefSeq.faa -> build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/sample_data/525367.9.RefSeq.gff -> build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/sample_data/525367.9.RefSeq.faa -> build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/sample_data/samples_gene_gff.txt -> build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/sample_data/1457190.3.RefSeq.gff -> build/bdist.linux-armv7l/wheel/traitar/data/sample_data copying build/lib/traitar/data/colors.txt -> build/bdist.linux-armv7l/wheel/traitar/data creating build/bdist.linux-armv7l/wheel/traitar/data/models copying build/lib/traitar/data/models/phypat+PGL.tar.gz -> build/bdist.linux-armv7l/wheel/traitar/data/models copying build/lib/traitar/data/models/phypat.tar.gz -> build/bdist.linux-armv7l/wheel/traitar/data/models copying build/lib/traitar/_version.py -> build/bdist.linux-armv7l/wheel/traitar copying build/lib/traitar/predict.py -> build/bdist.linux-armv7l/wheel/traitar creating build/bdist.linux-armv7l/wheel/tests copying build/lib/tests/test_pfam.py -> build/bdist.linux-armv7l/wheel/tests copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests copying build/lib/tests/test_Phenotype.py -> build/bdist.linux-armv7l/wheel/tests running install_egg_info running egg_info writing dependency_links to traitar3.egg-info/dependency_links.txt writing top-level names to traitar3.egg-info/top_level.txt writing requirements to traitar3.egg-info/requires.txt writing entry points to traitar3.egg-info/entry_points.txt writing traitar3.egg-info/PKG-INFO reading manifest file 'traitar3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'config.json' found under directory 'traitar' warning: no previously-included files matching '*.pyc' found under directory 'traitar' warning: no previously-included files matching '*.swp' found under directory 'traitar' writing manifest file 'traitar3.egg-info/SOURCES.txt' Copying traitar3.egg-info to build/bdist.linux-armv7l/wheel/traitar3-0.1.0-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data creating build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts copying build/scripts-3.4/hmm2gff.py -> build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts copying build/scripts-3.4/hmmer2filtered_best.py -> build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts copying build/scripts-3.4/domtblout2gene_generic.py -> build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts copying build/scripts-3.4/merge_preds.py -> build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts copying build/scripts-3.4/heatmap.py -> build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts copying build/scripts-3.4/predict.py -> build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts changing mode of build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts/hmm2gff.py to 755 changing mode of build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts/hmmer2filtered_best.py to 755 changing mode of build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts/domtblout2gene_generic.py to 755 changing mode of build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts/merge_preds.py to 755 changing mode of build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts/heatmap.py to 755 changing mode of build/bdist.linux-armv7l/wheel/traitar3-0.1.0.data/scripts/predict.py to 755 creating build/bdist.linux-armv7l/wheel/traitar3-0.1.0.dist-info/WHEEL creating '/tmp/pip-wheel-tzj5wc8n/traitar3-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'tests/__init__.py' adding 'tests/test_Phenotype.py' adding 'tests/test_pfam.py' adding 'traitar/PhenotypeCollection.py' adding 'traitar/__init__.py' adding 'traitar/__main__.py' adding 'traitar/_version.py' adding 'traitar/domtblout2gene_generic.py' adding 'traitar/evaluation.py' adding 'traitar/get_external_data.py' adding 'traitar/heatmap.py' adding 'traitar/hmm2gff.py' adding 'traitar/hmmer2filtered_best.py' adding 'traitar/merge_preds.py' adding 'traitar/modify.py' adding 'traitar/predict.py' adding 'traitar/traitar_cls.py' adding 'traitar/utils.py' adding 'traitar/Commands/__init__.py' adding 'traitar/Commands/annotate.py' adding 'traitar/Commands/evaluate.py' adding 'traitar/Commands/new.py' adding 'traitar/Commands/pfam.py' adding 'traitar/Commands/phenotype.py' adding 'traitar/Commands/remove.py' adding 'traitar/Commands/show.py' adding 'traitar/data/colors.txt' adding 'traitar/data/models/phypat+PGL.tar.gz' adding 'traitar/data/models/phypat.tar.gz' adding 'traitar/data/sample_data/1457190.3.RefSeq.faa' adding 'traitar/data/sample_data/1457190.3.RefSeq.gff' adding 'traitar/data/sample_data/525367.9.RefSeq.faa' adding 'traitar/data/sample_data/525367.9.RefSeq.gff' adding 'traitar/data/sample_data/samples.txt' adding 'traitar/data/sample_data/samples_gene_gff.txt' adding 'traitar3-0.1.0.data/scripts/domtblout2gene_generic.py' adding 'traitar3-0.1.0.data/scripts/heatmap.py' adding 'traitar3-0.1.0.data/scripts/hmm2gff.py' adding 'traitar3-0.1.0.data/scripts/hmmer2filtered_best.py' adding 'traitar3-0.1.0.data/scripts/merge_preds.py' adding 'traitar3-0.1.0.data/scripts/predict.py' adding 'traitar3-0.1.0.dist-info/METADATA' adding 'traitar3-0.1.0.dist-info/WHEEL' adding 'traitar3-0.1.0.dist-info/entry_points.txt' adding 'traitar3-0.1.0.dist-info/top_level.txt' adding 'traitar3-0.1.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for traitar3: finished with status 'done' Stored in directory: /tmp/tmp26h6_m4u Successfully built traitar3 Cleaning up... Removing source in /tmp/pip-wheel-15y3bk3f/traitar3 Removed build tracker '/tmp/pip-req-tracker-2pau2td5'