2020-03-13T18:49:45,979 Created temporary directory: /tmp/pip-ephem-wheel-cache-e503qs3z 2020-03-13T18:49:45,982 Created temporary directory: /tmp/pip-req-tracker-534z_9bm 2020-03-13T18:49:45,983 Initialized build tracking at /tmp/pip-req-tracker-534z_9bm 2020-03-13T18:49:45,984 Created build tracker: /tmp/pip-req-tracker-534z_9bm 2020-03-13T18:49:45,984 Entered build tracker: /tmp/pip-req-tracker-534z_9bm 2020-03-13T18:49:45,985 Created temporary directory: /tmp/pip-wheel-41v9i0dz 2020-03-13T18:49:45,990 1 location(s) to search for versions of gff3tool: 2020-03-13T18:49:45,990 * https://pypi.org/simple/gff3tool/ 2020-03-13T18:49:45,990 Fetching project page and analyzing links: https://pypi.org/simple/gff3tool/ 2020-03-13T18:49:45,991 Getting page https://pypi.org/simple/gff3tool/ 2020-03-13T18:49:45,993 Found index url https://pypi.org/simple 2020-03-13T18:49:45,996 Getting credentials from keyring for https://pypi.org/simple 2020-03-13T18:49:45,996 Getting credentials from keyring for pypi.org 2020-03-13T18:49:46,180 Found link https://files.pythonhosted.org/packages/71/33/dac2be6f38dd40d4f914814e7afe2cc5391f1bfecc77439612284de537a1/gff3tool-1.1.0.tar.gz#sha256=3351d9900f08082ddb462df6e295bf7f91be006053cce8e03f795ee202c430a7 (from https://pypi.org/simple/gff3tool/), version: 1.1.0 2020-03-13T18:49:46,181 Found link https://files.pythonhosted.org/packages/a1/f1/6630128adac220623c28a5f5ed4e6cfa070589143a0b2151237c20923149/gff3tool-1.3.0.tar.gz#sha256=3e5e99b7aa612514facad22f72aa7ffd36837437b76324de1a5da04677bbde27 (from https://pypi.org/simple/gff3tool/), version: 1.3.0 2020-03-13T18:49:46,181 Found link https://files.pythonhosted.org/packages/71/cb/9b9d73fd7171571b9ad063fa3a6aac684aeebc7e958a37e2423c690d5110/gff3tool-1.4.1.tar.gz#sha256=f042be97fe22c6e1dc822282790efe6d74a6b7b7aad500b8122558e4d5f5afd6 (from https://pypi.org/simple/gff3tool/), version: 1.4.1 2020-03-13T18:49:46,182 Found link https://files.pythonhosted.org/packages/23/bb/0b7952dfc7fb8992e6d7349eb55cbbe51e6c0750d57e33c01de5be39da46/gff3tool-1.4.2.tar.gz#sha256=c77b9ee648b6456118b7920bd2445adc48c2b5388f4057ccf8945f0998074397 (from https://pypi.org/simple/gff3tool/), version: 1.4.2 2020-03-13T18:49:46,182 Found link https://files.pythonhosted.org/packages/7c/79/b59b3e47735edfe2ac2a9334c8e2836d63c0899b51f9badc416ae07e8353/gff3tool-1.4.3.tar.gz#sha256=8159051e89a4bcde10f1617a89ae0202628898bfb9252910f472f4df8d1afaef (from https://pypi.org/simple/gff3tool/), version: 1.4.3 2020-03-13T18:49:46,183 Found link https://files.pythonhosted.org/packages/cf/33/8cd85764a601bf3a5e0116f8b457c308294ec9c25139aacade6e21860335/gff3tool-1.4.4.tar.gz#sha256=6e035dc7b351dcad2fd53f0409445462ab61420eea660a3005d72deeda5208fe (from https://pypi.org/simple/gff3tool/), version: 1.4.4 2020-03-13T18:49:46,184 Skipping link: No binaries permitted for gff3tool: https://files.pythonhosted.org/packages/2a/4c/a16d0aae5fa870fc7630eb0536042fd3e0494467efd9f27cea6090cdbbe0/gff3tool-1.4.5-cp27-cp27m-win_amd64.whl#sha256=0398d4554840911583c09b305f74f9814f00d59de5ada910e07086f177978ad8 (from https://pypi.org/simple/gff3tool/) 2020-03-13T18:49:46,184 Found link https://files.pythonhosted.org/packages/f8/78/330f714b6e771d69079128a44f61830c9ce22969eaa3b176dafb94c48809/gff3tool-1.4.5.tar.gz#sha256=f9e3814ed11626cdee6e52b9eed4fbdb56d4a726c57ca5cc1245ca6f8b913b40 (from https://pypi.org/simple/gff3tool/), version: 1.4.5 2020-03-13T18:49:46,185 Found link https://files.pythonhosted.org/packages/8a/82/0f528dc498d7fdfbd6b8a968ed1cfee43ffa55461e77830a22f606aea3bb/gff3tool-2.0.0.tar.gz#sha256=9ff0724a8b457fa2f6e5e546b690f3804985f4ab3a12ec087f340b82879a984d (from https://pypi.org/simple/gff3tool/), version: 2.0.0 2020-03-13T18:49:46,185 Found link https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz#sha256=e4745c6e2381def23fdb3ef2155632a432493a11766137258a4537e78861f55c (from https://pypi.org/simple/gff3tool/), version: 2.0.1 2020-03-13T18:49:46,194 Given no hashes to check 1 links for project 'gff3tool': discarding no candidates 2020-03-13T18:49:46,195 Using version 2.0.1 (newest of versions: 2.0.1) 2020-03-13T18:49:46,200 Collecting gff3tool==2.0.1 2020-03-13T18:49:46,202 Created temporary directory: /tmp/pip-unpack-9luky7mu 2020-03-13T18:49:46,205 Getting credentials from keyring for files.pythonhosted.org 2020-03-13T18:49:46,293 Downloading gff3tool-2.0.1.tar.gz (79 kB) 2020-03-13T18:49:46,551 Added gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz#sha256=e4745c6e2381def23fdb3ef2155632a432493a11766137258a4537e78861f55c to build tracker '/tmp/pip-req-tracker-534z_9bm' 2020-03-13T18:49:46,554 Running setup.py (path:/tmp/pip-wheel-41v9i0dz/gff3tool/setup.py) egg_info for package gff3tool 2020-03-13T18:49:46,556 Running command python setup.py egg_info 2020-03-13T18:49:48,230 running egg_info 2020-03-13T18:49:48,234 creating /tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info 2020-03-13T18:49:48,236 writing /tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/PKG-INFO 2020-03-13T18:49:48,240 writing dependency_links to /tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/dependency_links.txt 2020-03-13T18:49:48,243 writing entry points to /tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/entry_points.txt 2020-03-13T18:49:48,246 writing top-level names to /tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/top_level.txt 2020-03-13T18:49:48,249 writing manifest file '/tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/SOURCES.txt' 2020-03-13T18:49:48,505 reading manifest file '/tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/SOURCES.txt' 2020-03-13T18:49:48,507 reading manifest template 'MANIFEST.in' 2020-03-13T18:49:48,523 writing manifest file '/tmp/pip-wheel-41v9i0dz/gff3tool/pip-egg-info/gff3tool.egg-info/SOURCES.txt' 2020-03-13T18:49:48,647 Source in /tmp/pip-wheel-41v9i0dz/gff3tool has version 2.0.1, which satisfies requirement gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz#sha256=e4745c6e2381def23fdb3ef2155632a432493a11766137258a4537e78861f55c 2020-03-13T18:49:48,834 Removed gff3tool==2.0.1 from https://files.pythonhosted.org/packages/aa/b3/cecb768a048bf2e661f0e77bf3208ed8ef203acbd93107b1f00d7b57da1e/gff3tool-2.0.1.tar.gz#sha256=e4745c6e2381def23fdb3ef2155632a432493a11766137258a4537e78861f55c from build tracker '/tmp/pip-req-tracker-534z_9bm' 2020-03-13T18:49:48,842 Building wheels for collected packages: gff3tool 2020-03-13T18:49:48,853 Created temporary directory: /tmp/pip-wheel-7afdn2re 2020-03-13T18:49:48,855 Building wheel for gff3tool (setup.py): started 2020-03-13T18:49:48,856 Destination directory: /tmp/pip-wheel-7afdn2re 2020-03-13T18:49:48,856 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-41v9i0dz/gff3tool/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-41v9i0dz/gff3tool/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7afdn2re 2020-03-13T18:49:50,447 running bdist_wheel 2020-03-13T18:49:50,455 running build 2020-03-13T18:52:09,138 installing to build/bdist.linux-armv7l/wheel 2020-03-13T18:52:09,139 running install 2020-03-13T18:52:09,142 running install_lib 2020-03-13T18:52:09,148 running build_py 2020-03-13T18:52:09,401 creating build 2020-03-13T18:52:09,402 creating build/lib 2020-03-13T18:52:09,404 creating build/lib/gff3tool 2020-03-13T18:52:09,406 copying gff3tool/__init__.py -> build/lib/gff3tool 2020-03-13T18:52:09,412 creating build/lib/gff3tool/lib 2020-03-13T18:52:09,414 copying gff3tool/lib/gff3_ID_generator.py -> build/lib/gff3tool/lib 2020-03-13T18:52:09,421 copying gff3tool/lib/replace_OGS.py -> build/lib/gff3tool/lib 2020-03-13T18:52:09,550 copying gff3tool/lib/id_processor.py -> build/lib/gff3tool/lib 2020-03-13T18:52:09,559 copying gff3tool/lib/utils.py -> build/lib/gff3tool/lib 2020-03-13T18:52:09,565 copying gff3tool/lib/__init__.py -> build/lib/gff3tool/lib 2020-03-13T18:52:09,570 creating build/lib/gff3tool/bin 2020-03-13T18:52:09,572 copying gff3tool/bin/gff3_merge.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,579 copying gff3tool/bin/gff3_to_fasta.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,586 copying gff3tool/bin/version.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,590 copying gff3tool/bin/gff3_fix.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,595 copying gff3tool/bin/gff3_QC.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,601 copying gff3tool/bin/gff3_sort.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,608 copying gff3tool/bin/__init__.py -> build/lib/gff3tool/bin 2020-03-13T18:52:09,616 creating build/lib/gff3tool/lib/single_feature 2020-03-13T18:52:09,620 copying gff3tool/lib/single_feature/single_feature.py -> build/lib/gff3tool/lib/single_feature 2020-03-13T18:52:09,627 copying gff3tool/lib/single_feature/__init__.py -> build/lib/gff3tool/lib/single_feature 2020-03-13T18:52:09,633 creating build/lib/gff3tool/lib/function4gff 2020-03-13T18:52:09,636 copying gff3tool/lib/function4gff/function4gff.py -> build/lib/gff3tool/lib/function4gff 2020-03-13T18:52:09,641 copying gff3tool/lib/function4gff/__init__.py -> build/lib/gff3tool/lib/function4gff 2020-03-13T18:52:09,649 creating build/lib/gff3tool/lib/gff3_merge 2020-03-13T18:52:09,652 copying gff3tool/lib/gff3_merge/merge.py -> build/lib/gff3tool/lib/gff3_merge 2020-03-13T18:52:09,662 copying gff3tool/lib/gff3_merge/revision.py -> build/lib/gff3tool/lib/gff3_merge 2020-03-13T18:52:09,669 copying gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/lib/gff3tool/lib/gff3_merge 2020-03-13T18:52:09,677 copying gff3tool/lib/gff3_merge/__init__.py -> build/lib/gff3tool/lib/gff3_merge 2020-03-13T18:52:09,684 creating build/lib/gff3tool/lib/gff3_fix 2020-03-13T18:52:09,687 copying gff3tool/lib/gff3_fix/fix.py -> build/lib/gff3tool/lib/gff3_fix 2020-03-13T18:52:09,693 copying gff3tool/lib/gff3_fix/__init__.py -> build/lib/gff3tool/lib/gff3_fix 2020-03-13T18:52:09,698 creating build/lib/gff3tool/lib/inter_model 2020-03-13T18:52:09,700 copying gff3tool/lib/inter_model/inter_model.py -> build/lib/gff3tool/lib/inter_model 2020-03-13T18:52:09,705 copying gff3tool/lib/inter_model/__init__.py -> build/lib/gff3tool/lib/inter_model 2020-03-13T18:52:09,711 creating build/lib/gff3tool/lib/gff3 2020-03-13T18:52:09,714 copying gff3tool/lib/gff3/gff3.py -> build/lib/gff3tool/lib/gff3 2020-03-13T18:52:09,727 copying gff3tool/lib/gff3/__init__.py -> build/lib/gff3tool/lib/gff3 2020-03-13T18:52:09,732 creating build/lib/gff3tool/lib/intra_model 2020-03-13T18:52:09,734 copying gff3tool/lib/intra_model/intra_model.py -> build/lib/gff3tool/lib/intra_model 2020-03-13T18:52:09,739 copying gff3tool/lib/intra_model/__init__.py -> build/lib/gff3tool/lib/intra_model 2020-03-13T18:52:09,744 creating build/lib/gff3tool/lib/ERROR 2020-03-13T18:52:09,746 copying gff3tool/lib/ERROR/ERROR.py -> build/lib/gff3tool/lib/ERROR 2020-03-13T18:52:09,752 copying gff3tool/lib/ERROR/__init__.py -> build/lib/gff3tool/lib/ERROR 2020-03-13T18:52:09,757 running egg_info 2020-03-13T18:52:09,786 writing gff3tool.egg-info/PKG-INFO 2020-03-13T18:52:09,790 writing dependency_links to gff3tool.egg-info/dependency_links.txt 2020-03-13T18:52:09,793 writing entry points to gff3tool.egg-info/entry_points.txt 2020-03-13T18:52:09,796 writing top-level names to gff3tool.egg-info/top_level.txt 2020-03-13T18:52:09,814 reading manifest file 'gff3tool.egg-info/SOURCES.txt' 2020-03-13T18:52:09,819 reading manifest template 'MANIFEST.in' 2020-03-13T18:52:09,841 writing manifest file 'gff3tool.egg-info/SOURCES.txt' 2020-03-13T18:52:09,854 copying gff3tool/lib.md -> build/lib/gff3tool 2020-03-13T18:52:09,858 creating build/lib/gff3tool/lib/auto_assignment 2020-03-13T18:52:09,859 copying gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/lib/gff3tool/lib/auto_assignment 2020-03-13T18:52:09,865 copying gff3tool/lib/auto_assignment/find_match.pl -> build/lib/gff3tool/lib/auto_assignment 2020-03-13T18:52:09,870 copying gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/lib/gff3tool/lib/auto_assignment 2020-03-13T18:52:09,874 creating build/lib/gff3tool/lib/check_gene_parent 2020-03-13T18:52:09,876 copying gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/lib/gff3tool/lib/check_gene_parent 2020-03-13T18:52:09,883 creating build/lib/gff3tool/lib/ncbi-blast+ 2020-03-13T18:52:09,884 creating build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:09,887 copying gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:11,285 copying gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:12,156 copying gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:13,153 copying gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:15,152 copying gff3tool/lib/ncbi-blast+/bin/blastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:20,488 copying gff3tool/lib/ncbi-blast+/bin/blastp -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:21,879 copying gff3tool/lib/ncbi-blast+/bin/blastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:31,021 copying gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:31,971 copying gff3tool/lib/ncbi-blast+/bin/deltablast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:33,398 copying gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:34,344 copying gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:34,350 copying gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:40,752 copying gff3tool/lib/ncbi-blast+/bin/makembindex -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:45,563 copying gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:46,494 copying gff3tool/lib/ncbi-blast+/bin/psiblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:52:55,679 copying gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:04,901 copying gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:14,266 copying gff3tool/lib/ncbi-blast+/bin/segmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:21,081 copying gff3tool/lib/ncbi-blast+/bin/tblastn -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:30,858 copying gff3tool/lib/ncbi-blast+/bin/tblastx -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:39,939 copying gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:39,944 copying gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/lib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:47,428 creating build/bdist.linux-armv7l 2020-03-13T18:53:47,429 creating build/bdist.linux-armv7l/wheel 2020-03-13T18:53:47,430 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data 2020-03-13T18:53:47,432 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib 2020-03-13T18:53:47,436 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool 2020-03-13T18:53:47,439 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2020-03-13T18:53:47,442 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/check_gene_parent 2020-03-13T18:53:47,443 copying build/lib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/check_gene_parent 2020-03-13T18:53:47,449 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature 2020-03-13T18:53:47,450 copying build/lib/gff3tool/lib/single_feature/single_feature.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature 2020-03-13T18:53:47,455 copying build/lib/gff3tool/lib/single_feature/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature 2020-03-13T18:53:47,461 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff 2020-03-13T18:53:47,463 copying build/lib/gff3tool/lib/function4gff/function4gff.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff 2020-03-13T18:53:47,470 copying build/lib/gff3tool/lib/function4gff/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff 2020-03-13T18:53:47,475 copying build/lib/gff3tool/lib/gff3_ID_generator.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2020-03-13T18:53:47,484 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2020-03-13T18:53:47,486 copying build/lib/gff3tool/lib/gff3_merge/merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2020-03-13T18:53:47,493 copying build/lib/gff3tool/lib/gff3_merge/revision.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2020-03-13T18:53:47,499 copying build/lib/gff3tool/lib/gff3_merge/auto_replace_tag.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2020-03-13T18:53:47,504 copying build/lib/gff3tool/lib/gff3_merge/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge 2020-03-13T18:53:47,510 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix 2020-03-13T18:53:47,512 copying build/lib/gff3tool/lib/gff3_fix/fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix 2020-03-13T18:53:47,520 copying build/lib/gff3tool/lib/gff3_fix/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix 2020-03-13T18:53:47,530 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+ 2020-03-13T18:53:47,535 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:47,537 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:53,192 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:53:54,166 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:03,607 copying build/lib/gff3tool/lib/ncbi-blast+/bin/dustmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:09,523 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpstblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:10,978 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:20,112 copying build/lib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:20,252 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastp -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:29,451 copying build/lib/gff3tool/lib/ncbi-blast+/bin/psiblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:38,806 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:47,190 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blast_formatter -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:54:56,349 copying build/lib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:02,713 copying build/lib/gff3tool/lib/ncbi-blast+/bin/rpsblast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:12,285 copying build/lib/gff3tool/lib/ncbi-blast+/bin/deltablast -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:21,416 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastn -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:30,519 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makeblastdb -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:36,958 copying build/lib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:44,029 copying build/lib/gff3tool/lib/ncbi-blast+/bin/tblastx -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:53,204 copying build/lib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:53,209 copying build/lib/gff3tool/lib/ncbi-blast+/bin/makembindex -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:55:59,630 copying build/lib/gff3tool/lib/ncbi-blast+/bin/segmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:56:06,995 copying build/lib/gff3tool/lib/ncbi-blast+/bin/windowmasker -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin 2020-03-13T18:56:14,188 copying build/lib/gff3tool/lib/replace_OGS.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2020-03-13T18:56:14,323 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model 2020-03-13T18:56:14,325 copying build/lib/gff3tool/lib/inter_model/inter_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model 2020-03-13T18:56:14,332 copying build/lib/gff3tool/lib/inter_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model 2020-03-13T18:56:14,340 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2020-03-13T18:56:14,342 copying build/lib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2020-03-13T18:56:14,348 copying build/lib/gff3tool/lib/auto_assignment/find_match.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2020-03-13T18:56:14,353 copying build/lib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment 2020-03-13T18:56:14,359 copying build/lib/gff3tool/lib/id_processor.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2020-03-13T18:56:14,366 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3 2020-03-13T18:56:14,369 copying build/lib/gff3tool/lib/gff3/gff3.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3 2020-03-13T18:56:14,383 copying build/lib/gff3tool/lib/gff3/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3 2020-03-13T18:56:14,388 copying build/lib/gff3tool/lib/utils.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2020-03-13T18:56:14,394 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model 2020-03-13T18:56:14,395 copying build/lib/gff3tool/lib/intra_model/intra_model.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model 2020-03-13T18:56:14,401 copying build/lib/gff3tool/lib/intra_model/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model 2020-03-13T18:56:14,405 copying build/lib/gff3tool/lib/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib 2020-03-13T18:56:14,411 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR 2020-03-13T18:56:14,413 copying build/lib/gff3tool/lib/ERROR/ERROR.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR 2020-03-13T18:56:14,419 copying build/lib/gff3tool/lib/ERROR/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR 2020-03-13T18:56:14,427 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,429 copying build/lib/gff3tool/bin/gff3_merge.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,434 copying build/lib/gff3tool/bin/gff3_to_fasta.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,441 copying build/lib/gff3tool/bin/version.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,445 copying build/lib/gff3tool/bin/gff3_fix.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,449 copying build/lib/gff3tool/bin/gff3_QC.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,453 copying build/lib/gff3tool/bin/gff3_sort.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,459 copying build/lib/gff3tool/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool/bin 2020-03-13T18:56:14,463 copying build/lib/gff3tool/lib.md -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool 2020-03-13T18:56:14,467 copying build/lib/gff3tool/__init__.py -> build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool 2020-03-13T18:56:14,470 running install_egg_info 2020-03-13T18:56:14,769 Copying gff3tool.egg-info to build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.data/purelib/gff3tool-2.0.1-py3.7.egg-info 2020-03-13T18:56:14,851 running install_scripts 2020-03-13T18:56:15,475 creating build/bdist.linux-armv7l/wheel/gff3tool-2.0.1.dist-info/WHEEL 2020-03-13T18:56:15,481 creating '/tmp/pip-wheel-7afdn2re/gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-03-13T18:56:15,615 adding 'gff3tool-2.0.1.data/purelib/gff3tool/__init__.py' 2020-03-13T18:56:15,698 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib.md' 2020-03-13T18:56:15,703 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/__init__.py' 2020-03-13T18:56:15,707 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_QC.py' 2020-03-13T18:56:15,712 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_fix.py' 2020-03-13T18:56:15,718 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_merge.py' 2020-03-13T18:56:15,725 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_sort.py' 2020-03-13T18:56:15,731 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/gff3_to_fasta.py' 2020-03-13T18:56:15,734 adding 'gff3tool-2.0.1.data/purelib/gff3tool/bin/version.py' 2020-03-13T18:56:15,737 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/__init__.py' 2020-03-13T18:56:15,741 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_ID_generator.py' 2020-03-13T18:56:15,745 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/id_processor.py' 2020-03-13T18:56:15,751 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/replace_OGS.py' 2020-03-13T18:56:15,754 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/utils.py' 2020-03-13T18:56:15,757 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR/ERROR.py' 2020-03-13T18:56:15,759 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ERROR/__init__.py' 2020-03-13T18:56:15,763 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment/create_annotation_summaries_nov21-7.pl' 2020-03-13T18:56:15,766 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment/find_match.pl' 2020-03-13T18:56:15,768 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/auto_assignment/gen_spreadsheet.pl' 2020-03-13T18:56:15,773 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/check_gene_parent/find_wrongly_split_gene_parent.pl' 2020-03-13T18:56:15,776 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff/__init__.py' 2020-03-13T18:56:15,779 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/function4gff/function4gff.py' 2020-03-13T18:56:15,782 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3/__init__.py' 2020-03-13T18:56:15,795 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3/gff3.py' 2020-03-13T18:56:15,799 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix/__init__.py' 2020-03-13T18:56:15,933 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_fix/fix.py' 2020-03-13T18:56:15,939 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/__init__.py' 2020-03-13T18:56:15,945 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/auto_replace_tag.py' 2020-03-13T18:56:15,949 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/merge.py' 2020-03-13T18:56:15,953 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/gff3_merge/revision.py' 2020-03-13T18:56:15,956 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model/__init__.py' 2020-03-13T18:56:15,959 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/inter_model/inter_model.py' 2020-03-13T18:56:15,962 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model/__init__.py' 2020-03-13T18:56:15,965 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/intra_model/intra_model.py' 2020-03-13T18:56:31,683 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blast_formatter' 2020-03-13T18:56:41,826 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdb_aliastool' 2020-03-13T18:56:47,010 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcheck' 2020-03-13T18:56:56,459 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastdbcmd' 2020-03-13T18:57:12,682 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastn' 2020-03-13T18:57:26,153 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastp' 2020-03-13T18:57:42,318 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/blastx' 2020-03-13T18:57:53,351 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/convert2blastmask' 2020-03-13T18:58:08,455 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/deltablast' 2020-03-13T18:58:18,845 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/dustmasker' 2020-03-13T18:58:19,077 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/legacy_blast.pl' 2020-03-13T18:58:26,693 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeblastdb' 2020-03-13T18:58:33,893 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/makembindex' 2020-03-13T18:58:44,297 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/makeprofiledb' 2020-03-13T18:58:57,454 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/psiblast' 2020-03-13T18:59:13,060 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpsblast' 2020-03-13T18:59:27,429 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/rpstblastn' 2020-03-13T18:59:38,816 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/segmasker' 2020-03-13T18:59:55,152 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastn' 2020-03-13T19:00:10,875 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/tblastx' 2020-03-13T19:00:11,218 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/update_blastdb.pl' 2020-03-13T19:00:23,435 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/ncbi-blast+/bin/windowmasker' 2020-03-13T19:00:23,701 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature/__init__.py' 2020-03-13T19:00:23,704 adding 'gff3tool-2.0.1.data/purelib/gff3tool/lib/single_feature/single_feature.py' 2020-03-13T19:00:23,709 adding 'gff3tool-2.0.1.dist-info/METADATA' 2020-03-13T19:00:23,711 adding 'gff3tool-2.0.1.dist-info/WHEEL' 2020-03-13T19:00:23,713 adding 'gff3tool-2.0.1.dist-info/entry_points.txt' 2020-03-13T19:00:23,715 adding 'gff3tool-2.0.1.dist-info/top_level.txt' 2020-03-13T19:00:23,717 adding 'gff3tool-2.0.1.dist-info/RECORD' 2020-03-13T19:00:24,101 removing build/bdist.linux-armv7l/wheel 2020-03-13T19:00:25,129 Building wheel for gff3tool (setup.py): finished with status 'done' 2020-03-13T19:00:47,761 Created wheel for gff3tool: filename=gff3tool-2.0.1-cp37-cp37m-linux_armv7l.whl size=177059829 sha256=88be7d8c71c322212fdc989a672f6e0f10ed299cb5615d7d34f70058a0d6f928 2020-03-13T19:00:47,762 Stored in directory: /tmp/pip-ephem-wheel-cache-e503qs3z/wheels/66/3d/11/91ec04c86e20fbf6312dd0984817ad92492d1b6a2ddebeceeb 2020-03-13T19:00:47,799 Successfully built gff3tool 2020-03-13T19:01:18,724 Cleaning up... 2020-03-13T19:01:18,728 Removing source in /tmp/pip-wheel-41v9i0dz/gff3tool 2020-03-13T19:01:19,351 Removed build tracker: '/tmp/pip-req-tracker-534z_9bm'