2020-03-16T00:43:23 Created temporary directory: /tmp/pip-ephem-wheel-cache-xyofcyw4
2020-03-16T00:43:23 Created temporary directory: /tmp/pip-req-tracker-5ve_vfe5
2020-03-16T00:43:23 Created requirements tracker '/tmp/pip-req-tracker-5ve_vfe5'
2020-03-16T00:43:23 Created temporary directory: /tmp/pip-wheel-9cgya1lx
2020-03-16T00:43:23 Collecting gtdb-species-clusters==0.1.0
2020-03-16T00:43:23   1 location(s) to search for versions of gtdb-species-clusters:
2020-03-16T00:43:23   * https://pypi.org/simple/gtdb-species-clusters/
2020-03-16T00:43:23   Getting page https://pypi.org/simple/gtdb-species-clusters/
2020-03-16T00:43:23   Analyzing links from page https://pypi.org/simple/gtdb-species-clusters/
2020-03-16T00:43:24     Found link https://files.pythonhosted.org/packages/33/35/56b44a0bfdbf7cede0b5adaa84ba5a43fad6b8bf7f1da4ee7c4f51835a59/gtdb_species_clusters-0.1.0.tar.gz#sha256=9d4e75e866578a149f2e51af3a1d5a9d5cfb1372245a45f1ffff732d90f2f02f (from https://pypi.org/simple/gtdb-species-clusters/), version: 0.1.0
2020-03-16T00:43:24   Using version 0.1.0 (newest of versions: 0.1.0)
2020-03-16T00:43:24   Created temporary directory: /tmp/pip-unpack-nbh6omg3
2020-03-16T00:43:24   Downloading https://files.pythonhosted.org/packages/33/35/56b44a0bfdbf7cede0b5adaa84ba5a43fad6b8bf7f1da4ee7c4f51835a59/gtdb_species_clusters-0.1.0.tar.gz (108kB)
2020-03-16T00:43:24   Downloading from URL https://files.pythonhosted.org/packages/33/35/56b44a0bfdbf7cede0b5adaa84ba5a43fad6b8bf7f1da4ee7c4f51835a59/gtdb_species_clusters-0.1.0.tar.gz#sha256=9d4e75e866578a149f2e51af3a1d5a9d5cfb1372245a45f1ffff732d90f2f02f (from https://pypi.org/simple/gtdb-species-clusters/)
2020-03-16T00:43:24   Added gtdb-species-clusters==0.1.0 from https://files.pythonhosted.org/packages/33/35/56b44a0bfdbf7cede0b5adaa84ba5a43fad6b8bf7f1da4ee7c4f51835a59/gtdb_species_clusters-0.1.0.tar.gz#sha256=9d4e75e866578a149f2e51af3a1d5a9d5cfb1372245a45f1ffff732d90f2f02f to build tracker '/tmp/pip-req-tracker-5ve_vfe5'
2020-03-16T00:43:24     Running setup.py (path:/tmp/pip-wheel-9cgya1lx/gtdb-species-clusters/setup.py) egg_info for package gtdb-species-clusters
2020-03-16T00:43:24     Running command python setup.py egg_info
2020-03-16T00:43:25     running egg_info
2020-03-16T00:43:25     creating pip-egg-info/gtdb_species_clusters.egg-info
2020-03-16T00:43:25     writing pip-egg-info/gtdb_species_clusters.egg-info/PKG-INFO
2020-03-16T00:43:25     writing dependency_links to pip-egg-info/gtdb_species_clusters.egg-info/dependency_links.txt
2020-03-16T00:43:25     writing requirements to pip-egg-info/gtdb_species_clusters.egg-info/requires.txt
2020-03-16T00:43:25     writing top-level names to pip-egg-info/gtdb_species_clusters.egg-info/top_level.txt
2020-03-16T00:43:25     writing manifest file 'pip-egg-info/gtdb_species_clusters.egg-info/SOURCES.txt'
2020-03-16T00:43:26     reading manifest file 'pip-egg-info/gtdb_species_clusters.egg-info/SOURCES.txt'
2020-03-16T00:43:26     writing manifest file 'pip-egg-info/gtdb_species_clusters.egg-info/SOURCES.txt'
2020-03-16T00:43:26   Source in /tmp/pip-wheel-9cgya1lx/gtdb-species-clusters has version 0.1.0, which satisfies requirement gtdb-species-clusters==0.1.0 from https://files.pythonhosted.org/packages/33/35/56b44a0bfdbf7cede0b5adaa84ba5a43fad6b8bf7f1da4ee7c4f51835a59/gtdb_species_clusters-0.1.0.tar.gz#sha256=9d4e75e866578a149f2e51af3a1d5a9d5cfb1372245a45f1ffff732d90f2f02f
2020-03-16T00:43:26   Removed gtdb-species-clusters==0.1.0 from https://files.pythonhosted.org/packages/33/35/56b44a0bfdbf7cede0b5adaa84ba5a43fad6b8bf7f1da4ee7c4f51835a59/gtdb_species_clusters-0.1.0.tar.gz#sha256=9d4e75e866578a149f2e51af3a1d5a9d5cfb1372245a45f1ffff732d90f2f02f from build tracker '/tmp/pip-req-tracker-5ve_vfe5'
2020-03-16T00:43:26 Building wheels for collected packages: gtdb-species-clusters
2020-03-16T00:43:26   Created temporary directory: /tmp/pip-wheel-pyxv1m1a
2020-03-16T00:43:26   Building wheel for gtdb-species-clusters (setup.py): started
2020-03-16T00:43:26   Destination directory: /tmp/pip-wheel-pyxv1m1a
2020-03-16T00:43:26   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-9cgya1lx/gtdb-species-clusters/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pyxv1m1a
2020-03-16T00:43:27   running bdist_wheel
2020-03-16T00:43:27   running build
2020-03-16T00:43:27   running build_py
2020-03-16T00:43:27   creating build
2020-03-16T00:43:27   creating build/lib
2020-03-16T00:43:27   creating build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_new_genomes.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/common.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_species_names.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/taxa.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/cluster_stats.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_synonyms.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/species_clusters.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/species_priority_manager.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_cluster_de_novo.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/genome_utils.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/exceptions.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/fastani.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/genome.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/qc_genomes.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_cluster_named_reps.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_gtdbtk.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/main.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/type_genome_utils.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/species_name_manager.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/cluster_user.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/taxon_utils.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:27   copying gtdb_species_clusters/update_rep_actions.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/update_select_reps.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/update_summary_stats.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/genomes.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/mash.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/taxon_suffix_manager.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/update_resolve_types.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/__init__.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/merge_test.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/cluster_de_novo.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/cluster_named_types.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/update_rep_changes.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/select_type_genomes.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/tree_gids.py -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   copying gtdb_species_clusters/VERSION -> build/lib/gtdb_species_clusters
2020-03-16T00:43:28   running build_scripts
2020-03-16T00:43:28   creating build/scripts-3.7
2020-03-16T00:43:28   copying and adjusting bin/gtdb_species_clusters -> build/scripts-3.7
2020-03-16T00:43:28   changing mode of build/scripts-3.7/gtdb_species_clusters from 644 to 755
2020-03-16T00:43:28   installing to build/bdist.linux-armv7l/wheel
2020-03-16T00:43:28   running install
2020-03-16T00:43:28   running install_lib
2020-03-16T00:43:28   creating build/bdist.linux-armv7l
2020-03-16T00:43:28   creating build/bdist.linux-armv7l/wheel
2020-03-16T00:43:28   creating build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_new_genomes.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/common.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_species_names.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/taxa.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/cluster_stats.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_synonyms.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/species_clusters.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/species_priority_manager.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_cluster_de_novo.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/genome_utils.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/fastani.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/genome.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/VERSION -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/qc_genomes.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_cluster_named_reps.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_gtdbtk.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/main.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/type_genome_utils.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/species_name_manager.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/cluster_user.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/taxon_utils.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_rep_actions.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_select_reps.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_summary_stats.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/genomes.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/mash.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/taxon_suffix_manager.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_resolve_types.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/__init__.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/merge_test.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/cluster_de_novo.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/cluster_named_types.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/update_rep_changes.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/select_type_genomes.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   copying build/lib/gtdb_species_clusters/tree_gids.py -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters
2020-03-16T00:43:28   running install_egg_info
2020-03-16T00:43:28   running egg_info
2020-03-16T00:43:28   creating gtdb_species_clusters.egg-info
2020-03-16T00:43:28   writing gtdb_species_clusters.egg-info/PKG-INFO
2020-03-16T00:43:28   writing dependency_links to gtdb_species_clusters.egg-info/dependency_links.txt
2020-03-16T00:43:28   writing requirements to gtdb_species_clusters.egg-info/requires.txt
2020-03-16T00:43:28   writing top-level names to gtdb_species_clusters.egg-info/top_level.txt
2020-03-16T00:43:28   writing manifest file 'gtdb_species_clusters.egg-info/SOURCES.txt'
2020-03-16T00:43:28   reading manifest file 'gtdb_species_clusters.egg-info/SOURCES.txt'
2020-03-16T00:43:28   writing manifest file 'gtdb_species_clusters.egg-info/SOURCES.txt'
2020-03-16T00:43:28   Copying gtdb_species_clusters.egg-info to build/bdist.linux-armv7l/wheel/gtdb_species_clusters-0.1.0-py3.7.egg-info
2020-03-16T00:43:28   running install_scripts
2020-03-16T00:43:28   creating build/bdist.linux-armv7l/wheel/gtdb_species_clusters-0.1.0.data
2020-03-16T00:43:28   creating build/bdist.linux-armv7l/wheel/gtdb_species_clusters-0.1.0.data/scripts
2020-03-16T00:43:28   copying build/scripts-3.7/gtdb_species_clusters -> build/bdist.linux-armv7l/wheel/gtdb_species_clusters-0.1.0.data/scripts
2020-03-16T00:43:28   changing mode of build/bdist.linux-armv7l/wheel/gtdb_species_clusters-0.1.0.data/scripts/gtdb_species_clusters to 755
2020-03-16T00:43:28   creating build/bdist.linux-armv7l/wheel/gtdb_species_clusters-0.1.0.dist-info/WHEEL
2020-03-16T00:43:28   creating '/tmp/pip-wheel-pyxv1m1a/gtdb_species_clusters-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-03-16T00:43:28   adding 'gtdb_species_clusters/VERSION'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/__init__.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/cluster_de_novo.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/cluster_named_types.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/cluster_stats.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/cluster_user.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/common.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/exceptions.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/fastani.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/genome.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/genome_utils.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/genomes.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/main.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/mash.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/merge_test.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/qc_genomes.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/select_type_genomes.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/species_clusters.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/species_name_manager.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/species_priority_manager.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/taxa.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/taxon_suffix_manager.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/taxon_utils.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/tree_gids.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/type_genome_utils.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_cluster_de_novo.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_cluster_named_reps.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_gtdbtk.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_new_genomes.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_rep_actions.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_rep_changes.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_resolve_types.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_select_reps.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_species_names.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_summary_stats.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters/update_synonyms.py'
2020-03-16T00:43:28   adding 'gtdb_species_clusters-0.1.0.data/scripts/gtdb_species_clusters'
2020-03-16T00:43:28   adding 'gtdb_species_clusters-0.1.0.dist-info/METADATA'
2020-03-16T00:43:28   adding 'gtdb_species_clusters-0.1.0.dist-info/WHEEL'
2020-03-16T00:43:28   adding 'gtdb_species_clusters-0.1.0.dist-info/top_level.txt'
2020-03-16T00:43:28   adding 'gtdb_species_clusters-0.1.0.dist-info/RECORD'
2020-03-16T00:43:28   removing build/bdist.linux-armv7l/wheel
2020-03-16T00:43:28   Building wheel for gtdb-species-clusters (setup.py): finished with status 'done'
2020-03-16T00:43:28   Stored in directory: /tmp/tmpnrbntyan
2020-03-16T00:43:28 Successfully built gtdb-species-clusters
2020-03-16T00:43:28 Cleaning up...
2020-03-16T00:43:28   Removing source in /tmp/pip-wheel-9cgya1lx/gtdb-species-clusters
2020-03-16T00:43:28 Removed build tracker '/tmp/pip-req-tracker-5ve_vfe5'