2020-03-22T18:40:11 Created temporary directory: /tmp/pip-ephem-wheel-cache-89rpp00y
2020-03-22T18:40:11 Created temporary directory: /tmp/pip-req-tracker-ebkgsc6v
2020-03-22T18:40:11 Created requirements tracker '/tmp/pip-req-tracker-ebkgsc6v'
2020-03-22T18:40:11 Created temporary directory: /tmp/pip-wheel-3z4rzm7j
2020-03-22T18:40:11 Collecting rna-tools==3.1.2
2020-03-22T18:40:11   1 location(s) to search for versions of rna-tools:
2020-03-22T18:40:11   * https://pypi.org/simple/rna-tools/
2020-03-22T18:40:11   Getting page https://pypi.org/simple/rna-tools/
2020-03-22T18:40:11   Analyzing links from page https://pypi.org/simple/rna-tools/
2020-03-22T18:40:11     Found link https://files.pythonhosted.org/packages/4e/b0/7b809484967fa28b258a2b68c30d7bec5888457b012992c55f76758818e0/rna-tools-3.1.1.tar.gz#sha256=82fe7a42f08a129a902740ac59400f495028144f37b74751b714ab90bdf87abd (from https://pypi.org/simple/rna-tools/), version: 3.1.1
2020-03-22T18:40:11     Found link https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz#sha256=af0715892e0d2bd83459ea14d1ef23089c9cdeb36b1246eeba5e5dc7e4b9f910 (from https://pypi.org/simple/rna-tools/), version: 3.1.2
2020-03-22T18:40:11   Using version 3.1.2 (newest of versions: 3.1.2)
2020-03-22T18:40:11   Created temporary directory: /tmp/pip-unpack-_61tv956
2020-03-22T18:40:12   Downloading https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz (199kB)
2020-03-22T18:40:12   Downloading from URL https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz#sha256=af0715892e0d2bd83459ea14d1ef23089c9cdeb36b1246eeba5e5dc7e4b9f910 (from https://pypi.org/simple/rna-tools/)
2020-03-22T18:40:13   Added rna-tools==3.1.2 from https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz#sha256=af0715892e0d2bd83459ea14d1ef23089c9cdeb36b1246eeba5e5dc7e4b9f910 to build tracker '/tmp/pip-req-tracker-ebkgsc6v'
2020-03-22T18:40:13     Running setup.py (path:/tmp/pip-wheel-3z4rzm7j/rna-tools/setup.py) egg_info for package rna-tools
2020-03-22T18:40:13     Running command python setup.py egg_info
2020-03-22T18:40:15     WARNING: '' not a valid package name; please use only .-separated package names in setup.py
2020-03-22T18:40:15     running egg_info
2020-03-22T18:40:15     creating pip-egg-info/rna_tools.egg-info
2020-03-22T18:40:15     writing top-level names to pip-egg-info/rna_tools.egg-info/top_level.txt
2020-03-22T18:40:15     writing dependency_links to pip-egg-info/rna_tools.egg-info/dependency_links.txt
2020-03-22T18:40:15     writing pip-egg-info/rna_tools.egg-info/PKG-INFO
2020-03-22T18:40:15     writing manifest file 'pip-egg-info/rna_tools.egg-info/SOURCES.txt'
2020-03-22T18:40:15     reading manifest file 'pip-egg-info/rna_tools.egg-info/SOURCES.txt'
2020-03-22T18:40:15     writing manifest file 'pip-egg-info/rna_tools.egg-info/SOURCES.txt'
2020-03-22T18:40:15   Source in /tmp/pip-wheel-3z4rzm7j/rna-tools has version 3.1.2, which satisfies requirement rna-tools==3.1.2 from https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz#sha256=af0715892e0d2bd83459ea14d1ef23089c9cdeb36b1246eeba5e5dc7e4b9f910
2020-03-22T18:40:15   Removed rna-tools==3.1.2 from https://files.pythonhosted.org/packages/3a/6e/619cc9d4a4517d045024cd088ac8eb1401de769b1d43b6d93515250796a6/rna-tools-3.1.2.tar.gz#sha256=af0715892e0d2bd83459ea14d1ef23089c9cdeb36b1246eeba5e5dc7e4b9f910 from build tracker '/tmp/pip-req-tracker-ebkgsc6v'
2020-03-22T18:40:15 Building wheels for collected packages: rna-tools
2020-03-22T18:40:15   Created temporary directory: /tmp/pip-wheel-vt3i9fly
2020-03-22T18:40:15   Building wheel for rna-tools (setup.py): started
2020-03-22T18:40:15   Destination directory: /tmp/pip-wheel-vt3i9fly
2020-03-22T18:40:15   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-3z4rzm7j/rna-tools/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vt3i9fly
2020-03-22T18:40:17   WARNING: '' not a valid package name; please use only .-separated package names in setup.py
2020-03-22T18:40:17   running bdist_wheel
2020-03-22T18:40:17   running build
2020-03-22T18:40:17   running build_py
2020-03-22T18:40:18   creating build
2020-03-22T18:40:18   creating build/lib
2020-03-22T18:40:18   copying setup.py -> build/lib
2020-03-22T18:40:18   copying test.py -> build/lib
2020-03-22T18:40:18   copying __init__.py -> build/lib
2020-03-22T18:40:18   creating build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_pdb_toolsx.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_tools_config.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_calc_fenergy.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_dot2ct.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_secondary_structure_prediction.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/Seq.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/RfamSearch.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_tools_logging.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/SecondaryStructure.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_simrnaweb_download_job.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/BlastPDB.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_tools_lib.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_tools_test_all.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/update_readme.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/rna_tools_config_local.py -> build/lib/rna_tools
2020-03-22T18:40:18   copying rna_tools/__init__.py -> build/lib/rna_tools
2020-03-22T18:40:18   creating build/lib/rna_tools/tools
2020-03-22T18:40:18   copying rna_tools/tools/__init__.py -> build/lib/rna_tools/tools
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/rna_mq_plot.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/rna_mq_exp.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/reverse.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/rna_merge_dfs.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/translate.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/rna_add_chain.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   copying rna_tools/tools/misc/__init__.py -> build/lib/rna_tools/tools/misc
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_bp
2020-03-22T18:40:18   copying rna_tools/tools/rna_bp/base_pair.py -> build/lib/rna_tools/tools/rna_bp
2020-03-22T18:40:18   copying rna_tools/tools/rna_bp/__init__.py -> build/lib/rna_tools/tools/rna_bp
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/diffpdb
2020-03-22T18:40:18   copying rna_tools/tools/diffpdb/diffpdb.py -> build/lib/rna_tools/tools/diffpdb
2020-03-22T18:40:18   copying rna_tools/tools/diffpdb/__init__.py -> build/lib/rna_tools/tools/diffpdb
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/clanstix
2020-03-22T18:40:18   copying rna_tools/tools/clanstix/rna_clanstix_parallel_map.py -> build/lib/rna_tools/tools/clanstix
2020-03-22T18:40:18   copying rna_tools/tools/clanstix/rna_clanstix.py -> build/lib/rna_tools/tools/clanstix
2020-03-22T18:40:18   copying rna_tools/tools/clanstix/rna_clanstix_v1..py -> build/lib/rna_tools/tools/clanstix
2020-03-22T18:40:18   copying rna_tools/tools/clanstix/__init__.py -> build/lib/rna_tools/tools/clanstix
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/plotting
2020-03-22T18:40:18   copying rna_tools/tools/plotting/rna_plot_density.py -> build/lib/rna_tools/tools/plotting
2020-03-22T18:40:18   copying rna_tools/tools/plotting/rna_plot_hist.py -> build/lib/rna_tools/tools/plotting
2020-03-22T18:40:18   copying rna_tools/tools/plotting/__init__.py -> build/lib/rna_tools/tools/plotting
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/ClashCalc
2020-03-22T18:40:18   copying rna_tools/tools/ClashCalc/ClashCalc.py -> build/lib/rna_tools/tools/ClashCalc
2020-03-22T18:40:18   copying rna_tools/tools/ClashCalc/__init__.py -> build/lib/rna_tools/tools/ClashCalc
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/pymol_daslab.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   copying rna_tools/tools/PyMOL4RNA/code_for_color_spl_objects.py -> build/lib/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_x3dna
2020-03-22T18:40:18   copying rna_tools/tools/rna_x3dna/rna_x3dna_config_local.py -> build/lib/rna_tools/tools/rna_x3dna
2020-03-22T18:40:18   copying rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/lib/rna_tools/tools/rna_x3dna
2020-03-22T18:40:18   copying rna_tools/tools/rna_x3dna/rna_x3dna_config.py -> build/lib/rna_tools/tools/rna_x3dna
2020-03-22T18:40:18   copying rna_tools/tools/rna_x3dna/rna_x3dna_config_local_sample.py -> build/lib/rna_tools/tools/rna_x3dna
2020-03-22T18:40:18   copying rna_tools/tools/rna_x3dna/__init__.py -> build/lib/rna_tools/tools/rna_x3dna
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/clarna_app
2020-03-22T18:40:18   copying rna_tools/tools/clarna_app/clarna_app.py -> build/lib/rna_tools/tools/clarna_app
2020-03-22T18:40:18   copying rna_tools/tools/clarna_app/test.py -> build/lib/rna_tools/tools/clarna_app
2020-03-22T18:40:18   copying rna_tools/tools/clarna_app/__init__.py -> build/lib/rna_tools/tools/clarna_app
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_get_dists.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/pymol_dists.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/test_rna_filter.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_get_distances.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_filter.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/__init__.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   copying rna_tools/tools/rna_filter/rna_ec2x.py -> build/lib/rna_tools/tools/rna_filter
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_prediction_significance
2020-03-22T18:40:18   copying rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/lib/rna_tools/tools/rna_prediction_significance
2020-03-22T18:40:18   copying rna_tools/tools/rna_prediction_significance/__init__.py -> build/lib/rna_tools/tools/rna_prediction_significance
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_copy_job_sandbox.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/test.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/__init__.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   copying rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/lib/rna_tools/tools/rna_rosetta
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rnakb_utils
2020-03-22T18:40:18   copying rna_tools/tools/rnakb_utils/rnakb_utils.py -> build/lib/rna_tools/tools/rnakb_utils
2020-03-22T18:40:18   copying rna_tools/tools/rnakb_utils/test.py -> build/lib/rna_tools/tools/rnakb_utils
2020-03-22T18:40:18   copying rna_tools/tools/rnakb_utils/rnakb_utils_test.py -> build/lib/rna_tools/tools/rnakb_utils
2020-03-22T18:40:18   copying rna_tools/tools/rnakb_utils/__init__.py -> build/lib/rna_tools/tools/rnakb_utils
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/cluster_load
2020-03-22T18:40:18   copying rna_tools/tools/cluster_load/cluster_load.py -> build/lib/rna_tools/tools/cluster_load
2020-03-22T18:40:18   copying rna_tools/tools/cluster_load/cluster_mini_free.py -> build/lib/rna_tools/tools/cluster_load
2020-03-22T18:40:18   copying rna_tools/tools/cluster_load/__init__.py -> build/lib/rna_tools/tools/cluster_load
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/PDBFile.py -> build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/rebuilder.py -> build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/__init__.py -> build/lib/rna_tools/tools/pdb_formatix
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/pdb_formatix/test
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/test/test.py -> build/lib/rna_tools/tools/pdb_formatix/test
2020-03-22T18:40:18   copying rna_tools/tools/pdb_formatix/test/__init__.py -> build/lib/rna_tools/tools/pdb_formatix/test
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/lib/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/lib/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_inf/__init__.py -> build/lib/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/pymol_drawing
2020-03-22T18:40:18   copying rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/lib/rna_tools/tools/pymol_drawing
2020-03-22T18:40:18   copying rna_tools/tools/pymol_drawing/__init__.py -> build/lib/rna_tools/tools/pymol_drawing
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/test_rnaseq.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/test.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/bucket.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   copying rna_tools/tools/rna_alignment/__init__.py -> build/lib/rna_tools/tools/rna_alignment
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/lib/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/lib/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_calc_rmsd/lib
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd_trytofixselection.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_helix_vis
2020-03-22T18:40:18   copying rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/lib/rna_tools/tools/rna_helix_vis
2020-03-22T18:40:18   copying rna_tools/tools/rna_helix_vis/__init__.py -> build/lib/rna_tools/tools/rna_helix_vis
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_refinement
2020-03-22T18:40:18   copying rna_tools/tools/rna_refinement/rna_refinement.py -> build/lib/rna_tools/tools/rna_refinement
2020-03-22T18:40:18   copying rna_tools/tools/rna_refinement/__init__.py -> build/lib/rna_tools/tools/rna_refinement
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/extra_functions
2020-03-22T18:40:18   copying rna_tools/tools/extra_functions/gen_numbering.py -> build/lib/rna_tools/tools/extra_functions
2020-03-22T18:40:18   copying rna_tools/tools/extra_functions/select_fragment.py -> build/lib/rna_tools/tools/extra_functions
2020-03-22T18:40:18   copying rna_tools/tools/extra_functions/__init__.py -> build/lib/rna_tools/tools/extra_functions
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/renum_pdb_to_aln
2020-03-22T18:40:18   copying rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/lib/rna_tools/tools/renum_pdb_to_aln
2020-03-22T18:40:18   copying rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/lib/rna_tools/tools/renum_pdb_to_aln
2020-03-22T18:40:18   creating build/lib/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:18   copying rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying rna_tools/tools/simrna_trajectory/__init__.py -> build/lib/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_rmsd_trafl/config_local.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/rna_sali2dotbracket
2020-03-22T18:40:19   copying rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/lib/rna_tools/tools/rna_sali2dotbracket
2020-03-22T18:40:19   copying rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/lib/rna_tools/tools/rna_sali2dotbracket
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/pdbs_measure_atom_dists
2020-03-22T18:40:19   copying rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists
2020-03-22T18:40:19   copying rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:19   copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:19   copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:19   copying rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor_flymake.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments
2020-03-22T18:40:19   copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments
2020-03-22T18:40:19   copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments
2020-03-22T18:40:19   running build_scripts
2020-03-22T18:40:19   creating build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/rna_pdb_toolsx.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/diffpdb/diffpdb.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/clanstix/rna_clanstix.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/rna_dot2ct.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/rna_secondary_structure_prediction.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/clarna_app/clarna_app.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/misc/rna_add_chain.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/plotting/rna_plot_hist.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/plotting/rna_plot_density.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_filter/rna_filter.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_filter/rna_ec2x.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_refinement/rna_refinement.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/rna_simrnaweb_download_job.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/pefx/pefx.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/misc/translate.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_kd/rna_kd2pkd.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/rna_kd/rna_pkd2kd.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/scripts-3.5
2020-03-22T18:40:19   copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/scripts-3.5
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pdb_toolsx.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_calc_rmsd.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_calc_rmsd_all_vs_all.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/diffpdb.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_clanstix.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_dot2ct.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_secondary_structure_prediction.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_prediction_significance.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pdb_merge_into_one.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_calc_inf.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pk_simrna_to_one_line.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/clarna_app.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_helix_vis.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_add_chain.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_sali2dotbracket.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_run.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_cluster.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_min.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_n.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_extract_lowscore_decoys.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_check_progress.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_rosetta_head.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_simrna_lowest.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_simrna_extract.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_simrna_cluster.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_plot_hist.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_plot_density.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_filter.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_ec2x.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pairs2SimRNArestrs.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_ss_get_bps.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pairs_diff.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_align_seq_to_alignment.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_align_find_core.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_align_get_ss_from_stk.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_alignment_get_species.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_alignment_process_id.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_alignment_r2r.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_align_find_seq_in_alignment.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_align_foldability.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pdb_edit_occupancy_bfactor.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_refinement.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_simrnaweb_download_job.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_calc_evo_rmsd.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_calc_rmsd_multi_targets.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_calc_rmsd_trafl.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_cal_rmsd_trafl_plot.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_x3dna.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/renum_pdb_to_aln.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/pdbs_measure_atom_dists.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/random_assignment_of_nucleotides.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/select_seq_fromBLAStn_6outfm.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/pefx.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/translate.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/reverse.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_kd2pkd.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/rna_pkd2kd.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/pymol_color_by_conserv.py from 644 to 755
2020-03-22T18:40:19   changing mode of build/scripts-3.5/pymol_preview_generator.py from 644 to 755
2020-03-22T18:40:19   installing to build/bdist.linux-armv7l/wheel
2020-03-22T18:40:19   running install
2020-03-22T18:40:19   running install_lib
2020-03-22T18:40:19   creating build/bdist.linux-armv7l
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel
2020-03-22T18:40:19   copying build/lib/setup.py -> build/bdist.linux-armv7l/wheel
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor_flymake.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/rna_merge_dfs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_copy_job_sandbox.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/config_local.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd_trytofixselection.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/extra_functions/gen_numbering.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/extra_functions/select_fragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/extra_functions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/simrna_trajectory/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd
2020-03-22T18:40:19   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_filter/rna_get_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_filter/pymol_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_filter/test_rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:19   copying build/lib/rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_get_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_filter/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/PDBFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/rebuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdb_formatix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_refinement/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_helix_vis/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnakb_utils
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rnakb_utils/rnakb_utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnakb_utils
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rnakb_utils/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnakb_utils
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rnakb_utils/rnakb_utils_test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnakb_utils
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rnakb_utils/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnakb_utils
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_calc_inf/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clarna_app/clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clarna_app/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clarna_app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/diffpdb/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/diffpdb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/pymol_drawing/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/pymol_daslab.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_color_spl_objects.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clanstix/rna_clanstix_parallel_map.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clanstix/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clanstix/rna_clanstix_v1..py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/clanstix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/plotting/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/plotting/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/ClashCalc/ClashCalc.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/ClashCalc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/cluster_load/cluster_load.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/cluster_load/cluster_mini_free.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/cluster_load/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_prediction_significance/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna_config_local.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna_config.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna_config_local_sample.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_x3dna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_bp/base_pair.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_bp/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats
2020-03-22T18:40:20   creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/test_rnaseq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/bucket.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/tools/rna_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_pdb_toolsx.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_tools_config.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/Seq.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/RfamSearch.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_tools_logging.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/SecondaryStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/BlastPDB.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_tools_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_tools_test_all.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/update_readme.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/rna_tools_config_local.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/rna_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools
2020-03-22T18:40:20   copying build/lib/test.py -> build/bdist.linux-armv7l/wheel
2020-03-22T18:40:20   copying build/lib/__init__.py -> build/bdist.linux-armv7l/wheel
2020-03-22T18:40:20   running install_egg_info
2020-03-22T18:40:20   running egg_info
2020-03-22T18:40:20   creating rna_tools.egg-info
2020-03-22T18:40:20   writing top-level names to rna_tools.egg-info/top_level.txt
2020-03-22T18:40:20   writing dependency_links to rna_tools.egg-info/dependency_links.txt
2020-03-22T18:40:20   writing rna_tools.egg-info/PKG-INFO
2020-03-22T18:40:20   writing manifest file 'rna_tools.egg-info/SOURCES.txt'
2020-03-22T18:40:20   reading manifest file 'rna_tools.egg-info/SOURCES.txt'
2020-03-22T18:40:20   writing manifest file 'rna_tools.egg-info/SOURCES.txt'
2020-03-22T18:40:20   Copying rna_tools.egg-info to build/bdist.linux-armv7l/wheel/rna_tools-3.1.2-py3.5.egg-info
2020-03-22T18:40:20   running install_scripts
2020-03-22T18:40:21   creating build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data
2020-03-22T18:40:21   creating build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pdb_toolsx.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/pefx.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   copying build/scripts-3.5/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_simrna_extract.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pdb_toolsx.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_alignment_process_id.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_calc_rmsd_all_vs_all.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_align_find_core.py to 755
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2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_dot2ct.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_align_foldability.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/diffpdb.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_secondary_structure_prediction.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_refinement.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/clarna_app.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_calc_rmsd.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/reverse.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_ss_get_bps.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_align_seq_to_alignment.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/random_assignment_of_nucleotides.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/pymol_preview_generator.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_sali2dotbracket.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_align_find_seq_in_alignment.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_calc_inf.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_clanstix.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_cluster.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pairs_diff.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_prediction_significance.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pkd2kd.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_min.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pdb_merge_into_one.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_kd2pkd.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_simrnaweb_download_job.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/translate.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_simrna_lowest.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_check_progress.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/renum_pdb_to_aln.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_cal_rmsd_trafl_plot.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_add_chain.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/pdbs_measure_atom_dists.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_alignment_r2r.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_calc_rmsd_trafl.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/pefx.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_filter.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_plot_density.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_calc_evo_rmsd.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_align_get_ss_from_stk.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_helix_vis.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pk_simrna_to_one_line.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_calc_rmsd_multi_targets.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_plot_hist.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/select_seq_fromBLAStn_6outfm.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_simrna_cluster.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_head.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_run.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/pymol_color_by_conserv.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_alignment_get_species.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pdb_edit_occupancy_bfactor.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_pairs2SimRNArestrs.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_n.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_rosetta_extract_lowscore_decoys.py to 755
2020-03-22T18:40:21   changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.data/scripts/rna_ec2x.py to 755
2020-03-22T18:40:21   creating build/bdist.linux-armv7l/wheel/rna_tools-3.1.2.dist-info/WHEEL
2020-03-22T18:40:22   Building wheel for rna-tools (setup.py): finished with status 'done'
2020-03-22T18:40:23   Stored in directory: /tmp/tmp1vzc6tv9
2020-03-22T18:40:23 Successfully built rna-tools
2020-03-22T18:40:23 Cleaning up...
2020-03-22T18:40:23   Removing source in /tmp/pip-wheel-3z4rzm7j/rna-tools
2020-03-22T18:40:23 Removed build tracker '/tmp/pip-req-tracker-ebkgsc6v'