Created temporary directory: /tmp/pip-ephem-wheel-cache-g3btpli3 Created temporary directory: /tmp/pip-req-tracker-avvolfo8 Created requirements tracker '/tmp/pip-req-tracker-avvolfo8' Created temporary directory: /tmp/pip-wheel-buy8c5et Collecting sequana==0.8.1 1 location(s) to search for versions of sequana: * https://pypi.org/simple/sequana/ Getting page https://pypi.org/simple/sequana/ Analyzing links from page https://pypi.org/simple/sequana/ Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz#sha256=5a68ea464596221cc2136bd406532e551e024858401306ce220d74f33dc67a25 (from https://pypi.org/simple/sequana/), version: 0.0.2 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz#sha256=a35665981a7dc3bc0f4c616771deff660f200b68ddcf7111ddbf50954783ada6 (from https://pypi.org/simple/sequana/), version: 0.0.3 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz#sha256=003f89e7a3661f85300aa7469bd103e513f183b2d31c38658ee20d413a26b6e6 (from https://pypi.org/simple/sequana/), version: 0.1.0 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz#sha256=14170dd319f68d60f106596506e5ddb77e52fe14ce7a5a41ae06172149f6effd (from https://pypi.org/simple/sequana/), version: 0.1.1 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz#sha256=67a3165a43783d919587a50086c9809b142332e7ffe32c32956dfccf3f6ce759 (from https://pypi.org/simple/sequana/), version: 0.1.2 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz#sha256=53e6f4deb016c55202264adefc65d503c9a512389f67bd4c656ace5c00fca1d3 (from https://pypi.org/simple/sequana/), version: 0.1.4 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz#sha256=5a9b672fcce8ced9fbc3fc0bc86d9f7463860929f329391466a0a1330cf3618f (from https://pypi.org/simple/sequana/), version: 0.1.5 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz#sha256=014e162eb8b0a5fc27ab63191849f0407d73c0a7b8b7e559b2b70b7e39cc4113 (from https://pypi.org/simple/sequana/), version: 0.1.6 Found link https://files.pythonhosted.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz#sha256=a6b544d73f5c444e9153e5d1fbe372d96f2fbd7ba12f068fc0b5d42d5afdfded (from https://pypi.org/simple/sequana/), version: 0.1.7 Found link https://files.pythonhosted.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz#sha256=0eaa62a22bc0e4dfd0d4dc1ef1541bf46dbeac91eec7c9a37d53dd3dfa65aad3 (from https://pypi.org/simple/sequana/), version: 0.1.8 Found link https://files.pythonhosted.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz#sha256=e3ff0a4a524f5347d8ec56ea5c0c38b471e50fa99025e2f13975b095ae7c9a9c (from https://pypi.org/simple/sequana/), version: 0.1.9 Found link https://files.pythonhosted.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz#sha256=747aea49cb0ed23408ec1d0546599d60deeb7d4ce2c488606b54e5484a0ff16e (from https://pypi.org/simple/sequana/), version: 0.1.10 Found link https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz#sha256=e43a4d61b2aaa281aa04cbd1fa5e047a8fde9058654462f923fc95339c2791d1 (from https://pypi.org/simple/sequana/), version: 0.1.11 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz#sha256=8039374e99b48a2d6713a885b12d2b468f7b34b1bee97dba73b47f5170137d9a (from https://pypi.org/simple/sequana/), version: 0.1.12 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz#sha256=243f97f14e55e1a63066387a40210f6fae69ace1867d37c944b5c2adca02aa56 (from https://pypi.org/simple/sequana/), version: 0.1.13 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz#sha256=56de9f1ad75975640048dd487880d5806b4c4171be519afb114af7e1a1c2524c (from https://pypi.org/simple/sequana/), version: 0.1.14 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz#sha256=367f01afbf53b9daa5fb3c2d1f0b572f47c1eb5e2499263c1d7d037e30d86a69 (from https://pypi.org/simple/sequana/), version: 0.1.15 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz#sha256=c129726c5ba906898d2b64ae0e6c55e922cad57f9899527fb764aa4641d3d124 (from https://pypi.org/simple/sequana/), version: 0.1.16 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz#sha256=c986cfd188b2b9926fa47a441b463b4992b721a1814fdf816f19fae28bfda3d8 (from https://pypi.org/simple/sequana/), version: 0.1.17.1 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz#sha256=a46bca6bd4d4a615854901b845161866be8de61c63bb8fd8aa87332bd999e2e6 (from https://pypi.org/simple/sequana/), version: 0.1.18 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz#sha256=675770bba7d1a1164c11c1f2a9a8dc72c93130c7485a051dbcf00dc702f77936 (from https://pypi.org/simple/sequana/), version: 0.1.19 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz#sha256=36ee03b785cf4fb00ceeb078aceb385f40322a81021ac46b0c16ce0d8dc1d51f (from https://pypi.org/simple/sequana/), version: 0.1.20 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz#sha256=6ffb487609d0db8acb213e53407c3c1045158db0d9d253985ddae334183aea0f (from https://pypi.org/simple/sequana/), version: 0.1.21 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz#sha256=848e146c90a9f1d01f918a5f3d55eee8adc69510eee25276a18bd11dd4d9ed82 (from https://pypi.org/simple/sequana/), version: 0.2.0 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz#sha256=75a552ec790be9cdaf519d3a5fa695312dccf83f4125770e285e5ecf2e56124c (from https://pypi.org/simple/sequana/), version: 0.2.1 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz#sha256=ddb28bcfe2d6f7269c177327e57468c44a61bd68a88184d27540ea8a5110049b (from https://pypi.org/simple/sequana/), version: 0.3.0 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz#sha256=a753ec894449535bb537e1654ba80584b1c9bd0aaecc9eefea3a43c211755e4f (from https://pypi.org/simple/sequana/), version: 0.4.0 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz#sha256=4e722da0054e8c5bdc71f63f8214f9c58857fe0233b4fbe561708df31f078671 (from https://pypi.org/simple/sequana/), version: 0.4.1 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz#sha256=3b5da1b07bb39574c719b9286973ae0668f3a58bb53841df91d6e5c6106e6209 (from https://pypi.org/simple/sequana/), version: 0.4.2 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz#sha256=d4c6291836d5464535422e708c872f527c282b57a579c0c07e75ebeda12514b2 (from https://pypi.org/simple/sequana/), version: 0.5.0 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz#sha256=550aa7eaf17f19ebf5adcd96b7e1d1abf6b35b0a92bf91de5526e5dca591fb5a (from https://pypi.org/simple/sequana/), version: 0.5.1 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz#sha256=fecdd89470ddcef1330f48a6a07af09340cdc73e23935a95921265fe1927b467 (from https://pypi.org/simple/sequana/), version: 0.5.2 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz#sha256=6a1ce240bd11285e6033282e648509efdb6d6ed113242e8749275617a6d13f8a (from https://pypi.org/simple/sequana/), version: 0.6.0 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz#sha256=5d55fbe016b5c11e4eb505d25706f579d50b0460dfb518d9770a3918e2cd1ba9 (from https://pypi.org/simple/sequana/), version: 0.6.1 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz#sha256=d10d26f7dec1a0b58f7d383c07d110ff78e1d1b9848d12b6a8313b93730e4577 (from https://pypi.org/simple/sequana/), version: 0.6.2 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz#sha256=5fbdba3e7f5d45fb3ba60ddf74ac7f23959f981c5685a9915db27943ef2ef789 (from https://pypi.org/simple/sequana/), version: 0.6.3 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz#sha256=cdde5470cb569d918526c7ad35b2972ac6fd231f1004200d44d7e15c93070be7 (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz#sha256=3bba760223d4116e3b4376dc0017e305d5ce8ee2192a5ee069391e8feabf284c (from https://pypi.org/simple/sequana/), version: 0.6.4 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz#sha256=7eee9e748a4668a115eff49b989ee4c1fe5a52ad73eed00e24013d4a7b623407 (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz#sha256=79ae56447befbad5ac383d957d88c8163a5955b44c47c607cd1c8e80b34cb549 (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz#sha256=1aeab4823a6e62fdd526889e00e1d548a70e2b7bee4bf6a1ed76d6d8917fb1a2 (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz#sha256=48be98668a53eca7fed648badafee73df13bcc7850c9202dcebfc0e327e6e813 (from https://pypi.org/simple/sequana/), version: 0.7.0 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz#sha256=891e9a27fd992a9713de2e3afac9b4c8042d492703be65e1ae2b0ab098e275d6 (from https://pypi.org/simple/sequana/), version: 0.7.1 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz#sha256=c538faf3e9dcfe5546301f172aa0145133c241b638aa0e43ca816c1743df8f20 (from https://pypi.org/simple/sequana/), version: 0.8.0 Found link https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc (from https://pypi.org/simple/sequana/), version: 0.8.1 Using version 0.8.1 (newest of versions: 0.8.1) Created temporary directory: /tmp/pip-unpack-s8vt_4o3 Downloading https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz (12.5MB) Downloading from URL https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc (from https://pypi.org/simple/sequana/) Added sequana==0.8.1 from https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc to build tracker '/tmp/pip-req-tracker-avvolfo8' Running setup.py (path:/tmp/pip-wheel-buy8c5et/sequana/setup.py) egg_info for package sequana Running command python setup.py egg_info running egg_info creating pip-egg-info/sequana.egg-info writing dependency_links to pip-egg-info/sequana.egg-info/dependency_links.txt writing requirements to pip-egg-info/sequana.egg-info/requires.txt writing pip-egg-info/sequana.egg-info/PKG-INFO writing top-level names to pip-egg-info/sequana.egg-info/top_level.txt writing entry points to pip-egg-info/sequana.egg-info/entry_points.txt writing manifest file 'pip-egg-info/sequana.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/sequana.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*pyc' found under directory '*' warning: no previously-included files matching '*' found under directory 'sequana/methylation' warning: no previously-included files matching '*' found under directory 'test' warning: no previously-included files found matching 'sequana/rm2.py' writing manifest file 'pip-egg-info/sequana.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-buy8c5et/sequana has version 0.8.1, which satisfies requirement sequana==0.8.1 from https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc Removed sequana==0.8.1 from https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc from build tracker '/tmp/pip-req-tracker-avvolfo8' Building wheels for collected packages: sequana Created temporary directory: /tmp/pip-wheel-59tpwvdw Running setup.py bdist_wheel for sequana: started Destination directory: /tmp/pip-wheel-59tpwvdw Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-buy8c5et/sequana/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-59tpwvdw running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/sequana copying sequana/datatools.py -> build/lib/sequana copying sequana/criteria.py -> build/lib/sequana copying sequana/iotools.py -> build/lib/sequana copying sequana/freebayes_vcf_filter.py -> build/lib/sequana copying sequana/isoseq.py -> build/lib/sequana copying sequana/cnv.py -> build/lib/sequana copying sequana/mh.py -> build/lib/sequana copying sequana/vcf_filter.py -> build/lib/sequana copying sequana/iem.py -> build/lib/sequana copying sequana/stats.py -> build/lib/sequana copying sequana/canu_scanner.py -> build/lib/sequana copying sequana/fasta.py -> build/lib/sequana copying sequana/__init__.py -> build/lib/sequana copying sequana/coverage.py -> build/lib/sequana copying sequana/phred.py -> build/lib/sequana copying sequana/kraken.py -> build/lib/sequana copying sequana/adapters.py -> build/lib/sequana copying sequana/busco.py -> build/lib/sequana copying sequana/krona.py -> build/lib/sequana copying sequana/cigar.py -> build/lib/sequana copying sequana/iuapc.py -> build/lib/sequana copying sequana/pipelines_common.py -> build/lib/sequana copying sequana/summary.py -> build/lib/sequana copying sequana/kraken_builder.py -> build/lib/sequana copying sequana/bamtools.py -> build/lib/sequana copying sequana/kmer.py -> build/lib/sequana copying sequana/demultiplex.py -> build/lib/sequana copying sequana/gff3.py -> build/lib/sequana copying sequana/lazyimports.py -> build/lib/sequana copying sequana/sequence.py -> build/lib/sequana copying sequana/tools.py -> build/lib/sequana copying sequana/pacbio.py -> build/lib/sequana copying sequana/expdesign.py -> build/lib/sequana copying sequana/fastq.py -> build/lib/sequana copying sequana/snaketools.py -> build/lib/sequana copying sequana/cpg_islands.py -> build/lib/sequana copying sequana/assembly.py -> build/lib/sequana copying sequana/vcftools.py -> build/lib/sequana copying sequana/itol.py -> build/lib/sequana copying sequana/jsontool.py -> build/lib/sequana copying sequana/snpeff.py -> build/lib/sequana copying sequana/taxonomy.py -> build/lib/sequana copying sequana/pacbio_amplicon.py -> build/lib/sequana copying sequana/misc.py -> build/lib/sequana copying sequana/contigs.py -> build/lib/sequana copying sequana/trf.py -> build/lib/sequana copying sequana/running_median.py -> build/lib/sequana copying sequana/sniffer.py -> build/lib/sequana copying sequana/bedtools.py -> build/lib/sequana copying sequana/databases.py -> build/lib/sequana copying sequana/freebayes_bcf_filter.py -> build/lib/sequana copying sequana/errors.py -> build/lib/sequana copying sequana/lazy.py -> build/lib/sequana copying sequana/mixture.py -> build/lib/sequana creating build/lib/sequana/rules copying sequana/rules/__init__.py -> build/lib/sequana/rules creating build/lib/sequana/plots copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots copying sequana/plots/__init__.py -> build/lib/sequana/plots creating build/lib/sequana/resources copying sequana/resources/__init__.py -> build/lib/sequana/resources creating build/lib/sequana/multiqc copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc copying sequana/multiqc/config.py -> build/lib/sequana/multiqc copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc creating build/lib/sequana/pipelines copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines creating build/lib/sequana/viz copying sequana/viz/__init__.py -> build/lib/sequana/viz copying sequana/viz/imshow.py -> build/lib/sequana/viz copying sequana/viz/core.py -> build/lib/sequana/viz copying sequana/viz/hist2d.py -> build/lib/sequana/viz copying sequana/viz/boxplot.py -> build/lib/sequana/viz creating build/lib/sequana/modules_report copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report creating build/lib/sequana/utils copying sequana/utils/__init__.py -> build/lib/sequana/utils copying sequana/utils/tree.py -> build/lib/sequana/utils copying sequana/utils/config.py -> build/lib/sequana/utils copying sequana/utils/datatables_js.py -> build/lib/sequana/utils creating build/lib/sequana/scripts copying sequana/scripts/mapping.py -> build/lib/sequana/scripts copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts copying sequana/scripts/vcf2csv.py -> build/lib/sequana/scripts copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts copying sequana/scripts/gtf_fixer.py -> build/lib/sequana/scripts copying sequana/scripts/fastq_head.py -> build/lib/sequana/scripts copying sequana/scripts/__init__.py -> build/lib/sequana/scripts copying sequana/scripts/fastq_count.py -> build/lib/sequana/scripts copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts copying sequana/scripts/coverage.py -> build/lib/sequana/scripts copying sequana/scripts/substractor.py -> build/lib/sequana/scripts copying sequana/scripts/compressor.py -> build/lib/sequana/scripts copying sequana/scripts/summary.py -> build/lib/sequana/scripts copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts copying sequana/scripts/browser.py -> build/lib/sequana/scripts copying sequana/scripts/tools.py -> build/lib/sequana/scripts copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts copying sequana/scripts/fastq_summary.py -> build/lib/sequana/scripts copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts creating build/lib/sequana/sphinxext copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext creating build/lib/sequana/gui copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui copying sequana/gui/file_browser.py -> build/lib/sequana/gui copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui copying sequana/gui/__init__.py -> build/lib/sequana/gui copying sequana/gui/help.py -> build/lib/sequana/gui copying sequana/gui/preferences.py -> build/lib/sequana/gui copying sequana/gui/browser.py -> build/lib/sequana/gui copying sequana/gui/tools.py -> build/lib/sequana/gui copying sequana/gui/messages.py -> build/lib/sequana/gui copying sequana/gui/about.py -> build/lib/sequana/gui copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui copying sequana/gui/widgets.py -> build/lib/sequana/gui copying sequana/gui/snakemake.py -> build/lib/sequana/gui copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui copying sequana/gui/ipython.py -> build/lib/sequana/gui copying sequana/gui/ui_help.py -> build/lib/sequana/gui creating build/lib/sequana/rules/idr copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr creating build/lib/sequana/rules/picard-tools copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools creating build/lib/sequana/rules/Utils copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils creating build/lib/sequana/rules/Taxonomy copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy creating build/lib/sequana/rules/Adapters copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters creating build/lib/sequana/rules/Assembly copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly creating build/lib/sequana/rules/codecs copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs creating build/lib/sequana/rules/Variant_caller copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller creating build/lib/sequana/rules/SnpEff copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff creating build/lib/sequana/rules/deeptools copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools creating build/lib/sequana/rules/sambamba copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba creating build/lib/sequana/rules/Pacbio copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio creating build/lib/sequana/resources/data copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data creating build/lib/sequana/resources/busco copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco creating build/lib/sequana/resources/canvas copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas creating build/lib/sequana/resources/images copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images creating build/lib/sequana/resources/templates copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates creating build/lib/sequana/resources/css copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css creating build/lib/sequana/resources/js copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js creating build/lib/sequana/resources/snpeff copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff creating build/lib/sequana/resources/testing copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing creating build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters copying sequana/rules/README.rst -> build/lib/sequana/rules creating build/lib/sequana/rules/fastq_sampling copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling creating build/lib/sequana/rules/format_contigs copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs creating build/lib/sequana/rules/quast copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast creating build/lib/sequana/rules/bwa_bam_to_fastq copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq creating build/lib/sequana/rules/chipuanar copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar creating build/lib/sequana/rules/multiqc copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc creating build/lib/sequana/rules/bowtie2_mapping_dynamic copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic creating build/lib/sequana/rules/digital_normalisation copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation creating build/lib/sequana/rules/bam_analysis copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis creating build/lib/sequana/rules/revcomp_rule copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule creating build/lib/sequana/rules/rnaseqc2 copying sequana/rules/rnaseqc2/rnaseqc2.rules -> build/lib/sequana/rules/rnaseqc2 creating build/lib/sequana/rules/indel_realigner copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner creating build/lib/sequana/rules/fastq_stats_dynamic copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic creating build/lib/sequana/rules/spikes_counting copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting creating build/lib/sequana/rules/conda copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda creating build/lib/sequana/rules/igvtools copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools creating build/lib/sequana/rules/SARTools copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools creating build/lib/sequana/rules/copy_multiple_files copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files creating build/lib/sequana/rules/bowtie1_mapping_dynamic copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic creating build/lib/sequana/rules/mapping_analysis copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis creating build/lib/sequana/rules/bwa_index copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index creating build/lib/sequana/rules/multiqc2 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 creating build/lib/sequana/rules/bowtie2_index_dynamic copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic creating build/lib/sequana/rules/prokka copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka creating build/lib/sequana/rules/miRNA_count_dynamic copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic creating build/lib/sequana/rules/bwa_mem_dynamic copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic creating build/lib/sequana/rules/fastqc_dynamic copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic creating build/lib/sequana/rules/DupRadar copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar creating build/lib/sequana/rules/feature_counts copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts creating build/lib/sequana/rules/dag copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag creating build/lib/sequana/rules/bowtie1_index_dynamic copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic creating build/lib/sequana/rules/tophat_mapping copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping creating build/lib/sequana/rules/star_index copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index creating build/lib/sequana/rules/samtools_sort copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort creating build/lib/sequana/rules/sequana_coverage copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage creating build/lib/sequana/rules/summary_pipeline copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline creating build/lib/sequana/rules/preSARTools copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools creating build/lib/sequana/rules/star_mapping copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping creating build/lib/sequana/rules/remove_blacklist copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist creating build/lib/sequana/rules/bam_quality_filter copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter creating build/lib/sequana/rules/spp copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp creating build/lib/sequana/rules/samtools_depth copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth creating build/lib/sequana/rules/extract_fasta_from_bed copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed creating build/lib/sequana/rules/bed_to_gff copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff creating build/lib/sequana/rules/rulegraph copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph creating build/lib/sequana/rules/idr/union_peaks copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks creating build/lib/sequana/rules/idr/stats_peakCalling copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling creating build/lib/sequana/rules/idr/metrics_peaks copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks creating build/lib/sequana/rules/idr/select_peaks copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks creating build/lib/sequana/rules/idr/compute_idr copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr creating build/lib/sequana/rules/idr/intersectionApproach copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach creating build/lib/sequana/rules/idr/preIDR_dynamic copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic creating build/lib/sequana/rules/picard-tools/reorderSam copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam creating build/lib/sequana/rules/picard-tools/add_read_group copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary creating build/lib/sequana/rules/Utils/dynamic_copy copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf creating build/lib/sequana/rules/Utils/dynamic_unpigz copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz creating build/lib/sequana/rules/peak_calling creating build/lib/sequana/rules/peak_calling/macs2_dynamic copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic creating build/lib/sequana/rules/Dev creating build/lib/sequana/rules/Dev/kraken_adapters copying sequana/rules/Dev/kraken_adapters/kraken_adapters.rules -> build/lib/sequana/rules/Dev/kraken_adapters creating build/lib/sequana/rules/Taxonomy/fastq_screen copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen creating build/lib/sequana/rules/Taxonomy/fastq_screen_report copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report creating build/lib/sequana/rules/Adapters/adapter_removal copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal creating build/lib/sequana/rules/Adapters/alien_trimmer copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer creating build/lib/sequana/rules/Adapters/identify_adapters copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters creating build/lib/sequana/rules/Adapters/cutadapt copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt creating build/lib/sequana/rules/Assembly/spades_get_fastq copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq creating build/lib/sequana/rules/Assembly/busco copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco creating build/lib/sequana/rules/Assembly/canu copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu creating build/lib/sequana/rules/Assembly/busco_analysis copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis creating build/lib/sequana/rules/Assembly/spades copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades creating build/lib/sequana/rules/codecs/bz2_to_gz copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz creating build/lib/sequana/rules/codecs/fastq_to_gz copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz creating build/lib/sequana/rules/codecs/gz_to_dsrc copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc creating build/lib/sequana/rules/codecs/bam_to_fasta copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta creating build/lib/sequana/rules/codecs/dsrc_to_bz2 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 creating build/lib/sequana/rules/codecs/bz2_to_fastq copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq creating build/lib/sequana/rules/codecs/dsrc_to_gz copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz creating build/lib/sequana/rules/codecs/fastq_to_bz2 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 creating build/lib/sequana/rules/codecs/bz2_to_dsrc copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc creating build/lib/sequana/rules/codecs/fastq_to_dsrc copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc creating build/lib/sequana/rules/codecs/dsrc_to_fastq copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq creating build/lib/sequana/rules/codecs/gz_to_fastq copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq creating build/lib/sequana/rules/codecs/gz_to_bz2 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter creating build/lib/sequana/rules/Variant_caller/freebayes copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes creating build/lib/sequana/rules/Variant_caller/joint_freebayes copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes creating build/lib/sequana/rules/SnpEff/snpeff_dynamic copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic creating build/lib/sequana/rules/SnpEff/snpeff_create_database copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database creating build/lib/sequana/rules/deeptools/multiBamSummary copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary creating build/lib/sequana/rules/deeptools/bamCoverage copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage creating build/lib/sequana/rules/deeptools/plotCorrelation copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation creating build/lib/sequana/rules/deeptools/BamPEFragmentSize copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize creating build/lib/sequana/rules/deeptools/plotCoverage copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage creating build/lib/sequana/rules/sambamba/sambamba_filter copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter creating build/lib/sequana/rules/sambamba/sambamba_markdup copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup creating build/lib/sequana/rules/Pacbio/pacbio_quality copying sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/Pacbio/pacbio_quality creating build/lib/sequana/rules/Taxonomy/kraken creating build/lib/sequana/rules/Taxonomy/kraken/1.0 copying sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.0 creating build/lib/sequana/rules/Taxonomy/kraken/1.1 copying sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.1 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 creating build/lib/sequana/rules/SnpEff/snpeff creating build/lib/sequana/rules/SnpEff/snpeff/1.0 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc creating build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css copying sequana/resources/css/report.css -> build/lib/sequana/resources/css copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/rules creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs creating build/bdist.linux-armv7l/wheel/sequana/rules/idr copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/quast copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc2 copying build/lib/sequana/rules/rnaseqc2/rnaseqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc2 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting creating build/bdist.linux-armv7l/wheel/sequana/rules/Dev creating build/bdist.linux-armv7l/wheel/sequana/rules/Dev/kraken_adapters copying build/lib/sequana/rules/Dev/kraken_adapters/kraken_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Dev/kraken_adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/conda copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 copying build/lib/sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 copying build/lib/sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts creating build/bdist.linux-armv7l/wheel/sequana/rules/dag copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality copying build/lib/sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules creating build/bdist.linux-armv7l/wheel/sequana/rules/spp copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/resources creating build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data creating build/bdist.linux-armv7l/wheel/sequana/resources/busco copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas creating build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources creating build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates creating build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css creating build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff creating build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/pipelines copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/viz copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz creating build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils creating build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/vcf2csv.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/fastq_head.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/fastq_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/fastq_summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana creating build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana running install_egg_info running egg_info writing dependency_links to sequana.egg-info/dependency_links.txt writing sequana.egg-info/PKG-INFO writing top-level names to sequana.egg-info/top_level.txt writing entry points to sequana.egg-info/entry_points.txt writing requirements to sequana.egg-info/requires.txt reading manifest file 'sequana.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*pyc' found under directory '*' warning: no previously-included files matching '*' found under directory 'sequana/methylation' warning: no previously-included files matching '*' found under directory 'test' warning: no previously-included files found matching 'sequana/rm2.py' writing manifest file 'sequana.egg-info/SOURCES.txt' Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.8.1-py3.4.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/sequana-0.8.1.dist-info/WHEEL creating '/tmp/pip-wheel-59tpwvdw/sequana-0.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'sequana/__init__.py' adding 'sequana/adapters.py' adding 'sequana/assembly.py' adding 'sequana/bamtools.py' adding 'sequana/bedtools.py' adding 'sequana/busco.py' adding 'sequana/canu_scanner.py' adding 'sequana/cigar.py' adding 'sequana/cnv.py' adding 'sequana/contigs.py' adding 'sequana/coverage.py' adding 'sequana/cpg_islands.py' adding 'sequana/criteria.py' adding 'sequana/databases.py' adding 'sequana/datatools.py' adding 'sequana/demultiplex.py' adding 'sequana/errors.py' adding 'sequana/expdesign.py' adding 'sequana/fasta.py' adding 'sequana/fastq.py' adding 'sequana/freebayes_bcf_filter.py' adding 'sequana/freebayes_vcf_filter.py' adding 'sequana/gff3.py' adding 'sequana/iem.py' adding 'sequana/iotools.py' adding 'sequana/isoseq.py' adding 'sequana/itol.py' adding 'sequana/iuapc.py' adding 'sequana/jsontool.py' adding 'sequana/kmer.py' adding 'sequana/kraken.py' adding 'sequana/kraken_builder.py' adding 'sequana/krona.py' adding 'sequana/lazy.py' adding 'sequana/lazyimports.py' adding 'sequana/mh.py' adding 'sequana/misc.py' adding 'sequana/mixture.py' adding 'sequana/pacbio.py' adding 'sequana/pacbio_amplicon.py' adding 'sequana/phred.py' adding 'sequana/pipelines_common.py' adding 'sequana/running_median.py' adding 'sequana/sequence.py' adding 'sequana/snaketools.py' adding 'sequana/sniffer.py' adding 'sequana/snpeff.py' adding 'sequana/stats.py' adding 'sequana/summary.py' adding 'sequana/taxonomy.py' adding 'sequana/tools.py' adding 'sequana/trf.py' adding 'sequana/vcf_filter.py' adding 'sequana/vcftools.py' adding 'sequana/gui/__init__.py' adding 'sequana/gui/about.py' adding 'sequana/gui/browser.py' adding 'sequana/gui/file_browser.py' adding 'sequana/gui/help.py' adding 'sequana/gui/ipython.py' adding 'sequana/gui/messages.py' adding 'sequana/gui/preferences.py' adding 'sequana/gui/sequana_gui.py' adding 'sequana/gui/snakemake.py' adding 'sequana/gui/tools.py' adding 'sequana/gui/ui_help.py' adding 'sequana/gui/ui_mainwindow.py' adding 'sequana/gui/ui_preferences.py' adding 'sequana/gui/ui_snakemake.py' adding 'sequana/gui/widgets.py' adding 'sequana/modules_report/__init__.py' adding 'sequana/modules_report/bamqc.py' adding 'sequana/modules_report/base_module.py' adding 'sequana/modules_report/bwa_bam_to_fastq.py' adding 'sequana/modules_report/coverage.py' adding 'sequana/modules_report/cutadapt.py' adding 'sequana/modules_report/fastq_stats.py' adding 'sequana/modules_report/fastqc.py' adding 'sequana/modules_report/joint_calling.py' adding 'sequana/modules_report/kraken.py' adding 'sequana/modules_report/multi_summary.py' adding 'sequana/modules_report/pacbio_input_bam.py' adding 'sequana/modules_report/phix.py' adding 'sequana/modules_report/quast.py' adding 'sequana/modules_report/summary.py' adding 'sequana/modules_report/variant_calling.py' adding 'sequana/multiqc/__init__.py' adding 'sequana/multiqc/bamtools_stats.py' adding 'sequana/multiqc/config.py' adding 'sequana/multiqc/coverage.py' adding 'sequana/multiqc/isoseq.py' adding 'sequana/multiqc/isoseq_qc.py' adding 'sequana/multiqc/kraken.py' adding 'sequana/multiqc/multiqc_config.yaml' adding 'sequana/multiqc/pacbio_amplicon.py' adding 'sequana/multiqc/pacbio_qc.py' adding 'sequana/multiqc/quality_control.py' adding 'sequana/pipelines/__init__.py' adding 'sequana/pipelines/compressor/README.rst' adding 'sequana/pipelines/compressor/cluster_config.json' adding 'sequana/pipelines/compressor/compressor.rules' adding 'sequana/pipelines/compressor/config.yaml' adding 'sequana/pipelines/compressor/dag.png' adding 'sequana/pipelines/compressor/requirements.txt' adding 'sequana/pipelines/compressor/schema.yaml' adding 'sequana/plots/__init__.py' adding 'sequana/plots/canvasjs_base.py' adding 'sequana/plots/canvasjs_linegraph.py' adding 'sequana/resources/__init__.py' adding 'sequana/resources/busco/__init__.py' adding 'sequana/resources/busco/config.ini' adding 'sequana/resources/canvas/__init__.py' adding 'sequana/resources/canvas/bar.py' adding 'sequana/resources/css/__init__.py' adding 'sequana/resources/css/bootstrap.min.css' adding 'sequana/resources/css/buttons.dataTables.min.css' adding 'sequana/resources/css/jquery.dataTables.min.css' adding 'sequana/resources/css/jquery.dropdown.min.css' adding 'sequana/resources/css/report.css' adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' adding 'sequana/resources/data/JB409847.bcf' adding 'sequana/resources/data/JB409847.bed' adding 'sequana/resources/data/JB409847.cov.csv' adding 'sequana/resources/data/JB409847.csv' adding 'sequana/resources/data/JB409847.expected.vcf' adding 'sequana/resources/data/JB409847.fasta' adding 'sequana/resources/data/JB409847.filter.vcf' adding 'sequana/resources/data/JB409847.gbk' adding 'sequana/resources/data/JB409847.vc.csv' adding 'sequana/resources/data/JB409847.vcf' adding 'sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz' adding 'sequana/resources/data/KO_ATCACG_R1_test.fastq.gz' adding 'sequana/resources/data/README.rst' adding 'sequana/resources/data/SIRV.fa' adding 'sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz' adding 'sequana/resources/data/__init__.py' adding 'sequana/resources/data/measles.fa' adding 'sequana/resources/data/measles.fa.amb' adding 'sequana/resources/data/measles.fa.ann' adding 'sequana/resources/data/measles.fa.bwt' adding 'sequana/resources/data/measles.fa.pac' adding 'sequana/resources/data/measles.fa.sa' adding 'sequana/resources/data/measles.fa.sorted.bam' adding 'sequana/resources/data/phiX174.fa' adding 'sequana/resources/data/test_small.gff3' adding 'sequana/resources/data/virus.bed' adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa' adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa' adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa' adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa' adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa' adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa' adding 'sequana/resources/data/adapters/README.rst' adding 'sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa' adding 'sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa' adding 'sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa' adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa' adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa' adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa' adding 'sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa' adding 'sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa' adding 'sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa' adding 'sequana/resources/data/adapters/__init__.py' adding 'sequana/resources/data/adapters/adapters_NEBNext_fwd.fa' adding 'sequana/resources/data/adapters/adapters_NEBNext_rev.fa' adding 'sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa' adding 'sequana/resources/data/adapters/adapters_Nextera_fwd.fa' adding 'sequana/resources/data/adapters/adapters_Nextera_rev.fa' adding 'sequana/resources/data/adapters/adapters_Nextera_revcomp.fa' adding 'sequana/resources/data/adapters/adapters_SMARTer_fwd.fa' adding 'sequana/resources/data/adapters/adapters_SMARTer_rev.fa' adding 'sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa' adding 'sequana/resources/data/adapters/adapters_Small_fwd.fa' adding 'sequana/resources/data/adapters/adapters_Small_rev.fa' adding 'sequana/resources/data/adapters/adapters_Small_revcomp.fa' adding 'sequana/resources/data/adapters/adapters_TruSeq_fwd.fa' adding 'sequana/resources/data/adapters/adapters_TruSeq_rev.fa' adding 'sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa' adding 'sequana/resources/images/Institut_Pasteur.png' adding 'sequana/resources/images/__init__.py' adding 'sequana/resources/images/no_data.jpg' adding 'sequana/resources/js/__init__.py' adding 'sequana/resources/js/bootstrap.min.js' adding 'sequana/resources/js/buttons.html5.min.js' adding 'sequana/resources/js/buttons.print.min.js' adding 'sequana/resources/js/canvasjs.min.js' adding 'sequana/resources/js/dataTables.buttons.min.js' adding 'sequana/resources/js/jquery-2.1.1.js' adding 'sequana/resources/js/jquery-3.1.1.min.js' adding 'sequana/resources/js/jquery-3.2.1.min.js' adding 'sequana/resources/js/jquery.dataTables.min.js' adding 'sequana/resources/js/jquery.dropdown.min.js' adding 'sequana/resources/js/papaparse.min.js' adding 'sequana/resources/snpeff/__init__.py' adding 'sequana/resources/snpeff/snpEff.config' adding 'sequana/resources/templates/__init__.py' adding 'sequana/resources/templates/base.html' adding 'sequana/resources/templates/joint_calling.html' adding 'sequana/resources/templates/standard.html' adding 'sequana/resources/testing/README.rst' adding 'sequana/resources/testing/__init__.py' adding 'sequana/resources/testing/adapters_with_duplicates.fa' adding 'sequana/resources/testing/summary_bamtools_stats.txt' adding 'sequana/resources/testing/summary_coverage1.json' adding 'sequana/resources/testing/summary_coverage2.json' adding 'sequana/resources/testing/summary_kraken.json' adding 'sequana/resources/testing/summary_pacbio_qc1.json' adding 'sequana/resources/testing/summary_pacbio_qc2.json' adding 'sequana/resources/testing/summary_pacbio_qc3.json' adding 'sequana/resources/testing/summary_qc.json' adding 'sequana/resources/testing/test.bam' adding 'sequana/resources/testing/test.fasta' adding 'sequana/resources/testing/test.fastq' adding 'sequana/resources/testing/test.fastq.gz' adding 'sequana/resources/testing/test.sam' adding 'sequana/resources/testing/test.vcf' adding 'sequana/resources/testing/test_1_1000.fastq.gz' adding 'sequana/resources/testing/test_CS_tiny.bam' adding 'sequana/resources/testing/test_JB409847.bed' adding 'sequana/resources/testing/test_R1_.mapped.fastq' adding 'sequana/resources/testing/test_R1_.unmapped.fastq' adding 'sequana/resources/testing/test_R2_.mapped.fastq' adding 'sequana/resources/testing/test_R2_.unmapped.fastq' adding 'sequana/resources/testing/test_adapter_removal_output.txt' adding 'sequana/resources/testing/test_atropos_paired.txt' adding 'sequana/resources/testing/test_atropos_pe.json' adding 'sequana/resources/testing/test_atropos_pe.txt' adding 'sequana/resources/testing/test_atropos_se.json' adding 'sequana/resources/testing/test_atropos_se.txt' adding 'sequana/resources/testing/test_blast_ebi.xml' adding 'sequana/resources/testing/test_blast_local.xml' adding 'sequana/resources/testing/test_busco_full_table.tsv' adding 'sequana/resources/testing/test_cnvnator.txt' adding 'sequana/resources/testing/test_coverage.csv' adding 'sequana/resources/testing/test_cutadapt_paired.txt' adding 'sequana/resources/testing/test_dag.ann.dot' adding 'sequana/resources/testing/test_dag.dot' adding 'sequana/resources/testing/test_demultiplex_Stats.json' adding 'sequana/resources/testing/test_demultiplex_Stats_undetermined.json' adding 'sequana/resources/testing/test_expdesign_Hm2.csv' adding 'sequana/resources/testing/test_expdesign_generic.csv' adding 'sequana/resources/testing/test_expdesign_hiseq.csv' adding 'sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv' adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' adding 'sequana/resources/testing/test_expdesign_miseq_illumina2.csv' adding 'sequana/resources/testing/test_expdesign_miseq_illumina_1.csv' adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv' adding 'sequana/resources/testing/test_expdesign_rubicon.csv' adding 'sequana/resources/testing/test_expdesign_wrong.csv' adding 'sequana/resources/testing/test_fasta.fasta' adding 'sequana/resources/testing/test_generic.rules' adding 'sequana/resources/testing/test_generic.yaml' adding 'sequana/resources/testing/test_gtf_fixer.gtf' adding 'sequana/resources/testing/test_gui_generic_config.yaml' adding 'sequana/resources/testing/test_gui_generic_snakefile_config.rules' adding 'sequana/resources/testing/test_gui_generic_snakefile_configfile.rules' adding 'sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules' adding 'sequana/resources/testing/test_index_mapper.csv' adding 'sequana/resources/testing/test_isoseq_lq_sirv.bam' adding 'sequana/resources/testing/test_itol_basic.tree.txt' adding 'sequana/resources/testing/test_kraken.out' adding 'sequana/resources/testing/test_kraken.out.summary' adding 'sequana/resources/testing/test_krona_k1.tsv' adding 'sequana/resources/testing/test_krona_k2.tsv' adding 'sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv' adding 'sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv' adding 'sequana/resources/testing/test_measles.bam' adding 'sequana/resources/testing/test_measles.cram' adding 'sequana/resources/testing/test_measles.sam' adding 'sequana/resources/testing/test_pacbio_barcode_report.csv' adding 'sequana/resources/testing/test_pacbio_subreads.bam' adding 'sequana/resources/testing/test_sirv.xls' adding 'sequana/resources/testing/test_snakemake_stats.txt' adding 'sequana/resources/testing/test_snpeff_ref.gb' adding 'sequana/resources/testing/test_summary_fastq_stats.json' adding 'sequana/resources/testing/test_summary_module.svg' adding 'sequana/resources/testing/test_taxon_rtd.csv' adding 'sequana/resources/testing/test_vcf_mpileup_4dot1.vcf' adding 'sequana/rules/README.rst' adding 'sequana/rules/__init__.py' adding 'sequana/rules/Adapters/__init__.py' adding 'sequana/rules/Adapters/adapter_removal/adapter_removal.rules' adding 'sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules' adding 'sequana/rules/Adapters/cutadapt/cutadapt.rules' adding 'sequana/rules/Adapters/identify_adapters/identify_adapters.rules' adding 'sequana/rules/Assembly/__init__.py' adding 'sequana/rules/Assembly/busco/busco.rules' adding 'sequana/rules/Assembly/busco_analysis/busco_analysis.rules' adding 'sequana/rules/Assembly/canu/canu.rules' adding 'sequana/rules/Assembly/spades/spades.rules' adding 'sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules' adding 'sequana/rules/Dev/kraken_adapters/kraken_adapters.rules' adding 'sequana/rules/DupRadar/DupRadar.rules' adding 'sequana/rules/Pacbio/__init__.py' adding 'sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules' adding 'sequana/rules/SARTools/SARTools.rules' adding 'sequana/rules/SnpEff/__init__.py' adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' adding 'sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules' adding 'sequana/rules/Taxonomy/__init__.py' adding 'sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules' adding 'sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules' adding 'sequana/rules/Taxonomy/kraken/1.0/kraken.rules' adding 'sequana/rules/Taxonomy/kraken/1.1/kraken.rules' adding 'sequana/rules/Utils/__init__.py' adding 'sequana/rules/Utils/dynamic_copy/dynamic_copy.rules' adding 'sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules' adding 'sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules' adding 'sequana/rules/Variant_caller/__init__.py' adding 'sequana/rules/Variant_caller/freebayes/freebayes.rules' adding 'sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules' adding 'sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules' adding 'sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules' adding 'sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' adding 'sequana/rules/bam_analysis/bam_analysis.rules' adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' adding 'sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules' adding 'sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules' adding 'sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules' adding 'sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules' adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' adding 'sequana/rules/bwa_index/bwa_index.rules' adding 'sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules' adding 'sequana/rules/chipuanar/chipuanar.rules' adding 'sequana/rules/codecs/__init__.py' adding 'sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules' adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' adding 'sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules' adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' adding 'sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules' adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' adding 'sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules' adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' adding 'sequana/rules/conda/conda.rules' adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' adding 'sequana/rules/dag/dag.rules' adding 'sequana/rules/deeptools/__init__.py' adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' adding 'sequana/rules/deeptools/bamCoverage/bamCoverage.rules' adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' adding 'sequana/rules/digital_normalisation/digital_normalisation.rules' adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' adding 'sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules' adding 'sequana/rules/fastqc_dynamic/fastqc_dynamic.rules' adding 'sequana/rules/feature_counts/feature_counts.rules' adding 'sequana/rules/format_contigs/format_contigs.rules' adding 'sequana/rules/idr/__init__.py' adding 'sequana/rules/idr/compute_idr/compute_idr.rules' adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' adding 'sequana/rules/idr/select_peaks/select_peaks.rules' adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' adding 'sequana/rules/idr/union_peaks/union_peaks.rules' adding 'sequana/rules/igvtools/igvtools.rules' adding 'sequana/rules/indel_realigner/indel_realigner.rules' adding 'sequana/rules/mapping_analysis/mapping_analysis.rules' adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' adding 'sequana/rules/multiqc/multiqc.rules' adding 'sequana/rules/multiqc2/multiqc2.rules' adding 'sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules' adding 'sequana/rules/picard-tools/__init__.py' adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' adding 'sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules' adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' adding 'sequana/rules/preSARTools/preSARTools.rules' adding 'sequana/rules/prokka/prokka.rules' adding 'sequana/rules/quast/quast.rules' adding 'sequana/rules/remove_blacklist/remove_blacklist.rules' adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' adding 'sequana/rules/rnaseqc2/rnaseqc2.rules' adding 'sequana/rules/rulegraph/rulegraph.rules' adding 'sequana/rules/sambamba/__init__.py' adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' adding 'sequana/rules/samtools_depth/samtools_depth.rules' adding 'sequana/rules/samtools_sort/samtools_sort.rules' adding 'sequana/rules/sequana_coverage/sequana_coverage.rules' adding 'sequana/rules/spikes_counting/spikes_counting.rules' adding 'sequana/rules/spp/spp.rules' adding 'sequana/rules/star_index/star_index.rules' adding 'sequana/rules/star_mapping/star_mapping.rules' adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' adding 'sequana/rules/tophat_mapping/tophat_mapping.rules' adding 'sequana/scripts/__init__.py' adding 'sequana/scripts/bam_splitter.py' adding 'sequana/scripts/browser.py' adding 'sequana/scripts/compressor.py' adding 'sequana/scripts/coverage.py' adding 'sequana/scripts/fastq_count.py' adding 'sequana/scripts/fastq_head.py' adding 'sequana/scripts/fastq_summary.py' adding 'sequana/scripts/fixR1R2.py' adding 'sequana/scripts/gtf_fixer.py' adding 'sequana/scripts/lane_merging.py' adding 'sequana/scripts/mapping.py' adding 'sequana/scripts/start_pipeline.py' adding 'sequana/scripts/substractor.py' adding 'sequana/scripts/summary.py' adding 'sequana/scripts/taxonomy.py' adding 'sequana/scripts/tools.py' adding 'sequana/scripts/vcf2csv.py' adding 'sequana/scripts/vcf_filter.py' adding 'sequana/sphinxext/__init__.py' adding 'sequana/sphinxext/sequana_pipeline.py' adding 'sequana/sphinxext/snakemakerule.py' adding 'sequana/utils/__init__.py' adding 'sequana/utils/config.py' adding 'sequana/utils/datatables_js.py' adding 'sequana/utils/tree.py' adding 'sequana/viz/__init__.py' adding 'sequana/viz/boxplot.py' adding 'sequana/viz/core.py' adding 'sequana/viz/hist2d.py' adding 'sequana/viz/imshow.py' adding 'sequana-0.8.1.dist-info/LICENSE' adding 'sequana-0.8.1.dist-info/METADATA' adding 'sequana-0.8.1.dist-info/WHEEL' adding 'sequana-0.8.1.dist-info/entry_points.txt' adding 'sequana-0.8.1.dist-info/top_level.txt' adding 'sequana-0.8.1.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for sequana: finished with status 'done' Stored in directory: /tmp/tmpb2ewur36 Successfully built sequana Cleaning up... Removing source in /tmp/pip-wheel-buy8c5et/sequana Removed build tracker '/tmp/pip-req-tracker-avvolfo8'